Wall clock time and date at job start Sun Mar 29 2020 21:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46881 * 2 1 4 4 C 1.52997 * 109.47504 * 120.00361 * 2 1 3 5 5 C 1.53000 * 109.47060 * 185.00270 * 4 2 1 6 6 C 1.50703 * 109.46912 * 179.97438 * 5 4 2 7 7 H 1.08001 * 119.99776 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00001 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00114 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99955 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46999 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46979 * 120.00420 * 10 8 6 13 13 H 1.48498 * 109.46942 * 240.00334 * 10 8 6 14 14 N 1.46905 * 109.47170 * 240.00659 * 2 1 3 15 15 C 1.46897 * 111.00060 * 84.99377 * 14 2 1 16 16 H 1.08998 * 115.55862 * 350.58742 * 15 14 2 17 17 C 1.53125 * 117.51028 * 136.31848 * 15 14 2 18 18 C 1.52459 * 117.51178 * 204.84588 * 15 14 2 19 19 C 1.53257 * 128.58048 * 134.95790 * 18 15 14 20 20 C 1.53899 * 86.88143 * 194.88669 * 19 18 15 21 21 C 1.53249 * 128.58670 * 10.16019 * 18 15 14 22 22 H 1.09002 * 109.47016 * 299.99380 * 1 2 3 23 23 H 1.09000 * 109.47400 * 59.99781 * 1 2 3 24 24 H 1.09004 * 109.46881 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 64.99951 * 4 2 1 26 26 H 1.09001 * 109.46832 * 305.00142 * 4 2 1 27 27 H 1.09001 * 109.47194 * 299.99650 * 5 4 2 28 28 H 1.08992 * 109.47399 * 59.99823 * 5 4 2 29 29 H 0.97000 * 120.00354 * 180.02562 * 9 8 6 30 30 H 1.00897 * 110.99884 * 321.04390 * 14 2 1 31 31 H 1.09002 * 117.51520 * 214.89402 * 17 15 14 32 32 H 1.09000 * 117.51296 * 0.02562 * 17 15 14 33 33 H 1.09006 * 113.64718 * 309.38249 * 19 18 15 34 34 H 1.09001 * 113.65046 * 80.39186 * 19 18 15 35 35 H 1.08991 * 113.58768 * 270.38905 * 20 19 18 36 36 H 1.08998 * 113.65606 * 139.57979 * 20 19 18 37 37 H 1.09000 * 113.64422 * 279.60468 * 21 18 15 38 38 H 1.08998 * 113.65078 * 50.51932 * 21 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6132 1.3135 6 6 4.0672 -1.3232 2.5443 7 1 3.3688 -1.8038 3.2133 8 6 5.4185 -1.3601 2.8156 9 7 6.2691 -0.7753 2.0006 10 14 6.0412 -2.2395 4.3415 11 1 4.8911 -2.8103 5.0877 12 1 6.9628 -3.3329 3.9413 13 1 6.7645 -1.2748 5.2083 14 7 2.0197 -0.6924 -1.1996 15 6 2.0823 0.2228 -2.3469 16 1 1.6209 1.1986 -2.1958 17 6 3.3281 0.1593 -3.2351 18 6 1.9968 -0.3886 -3.7409 19 6 1.1647 0.0787 -4.9401 20 6 1.4475 -1.2985 -5.5660 21 6 1.6416 -1.8267 -4.1337 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.7517 -1.7716 1.2054 26 1 1.6054 -0.2618 2.1369 27 1 3.9995 -1.0727 0.4258 28 1 3.8532 0.4370 1.3572 29 1 7.2198 -0.8016 2.1912 30 1 1.4496 -1.4978 -1.4102 31 1 3.6854 1.0933 -3.6688 32 1 4.1006 -0.5618 -2.9681 33 1 0.1133 0.2444 -4.7048 34 1 1.6134 0.9079 -5.4871 35 1 2.3557 -1.3258 -6.1679 36 1 0.5878 -1.7312 -6.0777 37 1 2.4727 -2.5250 -4.0342 38 1 0.7239 -2.1920 -3.6728 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172487944.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:00 Heat of formation + Delta-G solvation = 9.866496 kcal Electronic energy + Delta-G solvation = -15300.288593 eV Core-core repulsion = 12949.603281 eV Total energy + Delta-G solvation = -2350.685312 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.51628 -38.02045 -35.38068 -34.23938 -31.73364 -29.52379 -26.99385 -26.52801 -23.90066 -23.35169 -22.08223 -21.39666 -19.12619 -18.37172 -16.99259 -16.62917 -16.41237 -16.06334 -15.39657 -14.71306 -14.53799 -14.12217 -14.00034 -13.32935 -13.18145 -13.15860 -13.05671 -12.86878 -12.65007 -12.37341 -12.33527 -12.21999 -11.82858 -11.54175 -11.32344 -11.12714 -11.11729 -10.84368 -10.51943 -10.46662 -8.97052 -8.13933 -6.24861 1.39413 1.40278 1.53475 2.43537 2.85615 3.06804 3.18288 3.72503 3.76094 3.95536 4.00628 4.09654 4.17715 4.32101 4.45603 4.57890 4.64942 4.77005 4.85569 4.87305 4.92311 4.97172 5.02163 5.05975 5.09741 5.15688 5.23474 5.27886 5.45762 5.46927 5.52538 5.59028 5.89082 6.02758 6.33012 6.34958 6.62013 6.95502 7.43507 8.97760 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.036000 B = 0.005613 C = 0.005186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.590244 B = 4987.343771 C = 5398.146294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.092 3.908 3 H 0.058 0.942 4 C -0.088 4.088 5 C 0.039 3.961 6 C -0.542 4.542 7 H 0.056 0.944 8 C -0.003 4.003 9 N -0.934 5.934 10 Si 0.963 3.037 11 H -0.262 1.262 12 H -0.279 1.279 13 H -0.278 1.278 14 N -0.659 5.659 15 C 0.030 3.970 16 H 0.099 0.901 17 C -0.157 4.157 18 C -0.160 4.160 19 C -0.094 4.094 20 C -0.126 4.126 21 C -0.104 4.104 22 H 0.065 0.935 23 H 0.062 0.938 24 H 0.061 0.939 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.001 0.999 28 H -0.025 1.025 29 H 0.261 0.739 30 H 0.342 0.658 31 H 0.102 0.898 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.055 0.945 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.873 0.873 -13.045 18.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.017 4.017 3 H 0.077 0.923 4 C -0.127 4.127 5 C 0.002 3.998 6 C -0.580 4.580 7 H 0.074 0.926 8 C -0.200 4.200 9 N -0.575 5.575 10 Si 0.787 3.213 11 H -0.186 1.186 12 H -0.205 1.205 13 H -0.204 1.204 14 N -0.290 5.290 15 C -0.080 4.080 16 H 0.117 0.883 17 C -0.195 4.195 18 C -0.161 4.161 19 C -0.131 4.131 20 C -0.163 4.163 21 C -0.142 4.142 22 H 0.084 0.916 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.020 0.980 28 H -0.007 1.007 29 H 0.070 0.930 30 H 0.163 0.837 31 H 0.120 0.880 32 H 0.093 0.907 33 H 0.111 0.889 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.074 0.926 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.050 0.971 -12.881 17.665 hybrid contribution 0.156 -0.172 0.735 0.771 sum -11.894 0.799 -12.146 17.018 Atomic orbital electron populations 1.22399 0.95154 1.02467 1.02488 1.21578 0.93453 0.96796 0.89907 0.92321 1.21463 0.96537 0.99080 0.95573 1.18815 0.92235 0.93770 0.95000 1.21853 0.92555 1.34290 1.09337 0.92559 1.25980 0.97394 0.96510 1.00073 1.70139 1.02549 1.45752 1.39074 0.85438 0.78416 0.78270 0.79137 1.18556 1.20461 1.20366 1.60056 1.57455 1.09040 1.02419 1.22310 1.01882 0.96825 0.87021 0.88298 1.23024 0.91287 1.02230 1.02973 1.22807 1.00163 0.98391 0.94784 1.22512 0.99388 0.97722 0.93481 1.22682 1.02338 0.96089 0.95231 1.22451 1.01265 0.93462 0.96982 0.91582 0.91898 0.91986 0.93416 0.92985 0.98019 1.00656 0.93044 0.83743 0.88016 0.90745 0.88854 0.90978 0.90201 0.89730 0.92648 0.89185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.26 9.16 71.98 0.66 -3.60 16 2 C 0.09 3.19 2.48 44.91 0.11 3.30 16 3 H 0.06 2.18 7.74 -2.39 -0.02 2.16 16 4 C -0.09 -3.80 4.83 30.59 0.15 -3.65 16 5 C 0.04 2.18 4.86 29.85 0.15 2.33 16 6 C -0.54 -32.48 9.11 25.60 0.23 -32.24 16 7 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 8 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 9 N -0.93 -59.68 13.29 21.45 0.28 -59.39 16 10 Si 0.96 46.05 29.54 68.60 2.03 48.08 16 11 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 13 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 14 N -0.66 -22.46 5.95 -470.18 -2.80 -25.26 16 15 C 0.03 0.89 5.96 44.78 0.27 1.16 16 16 H 0.10 2.76 7.77 -2.39 -0.02 2.74 16 17 C -0.16 -4.72 10.47 30.50 0.32 -4.40 16 18 C -0.16 -3.88 2.99 -52.33 -0.16 -4.04 16 19 C -0.09 -1.69 8.10 30.98 0.25 -1.43 16 20 C -0.13 -2.14 8.08 31.20 0.25 -1.89 16 21 C -0.10 -2.25 7.60 30.98 0.24 -2.02 16 22 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.06 1.40 8.07 -2.39 -0.02 1.38 16 24 H 0.06 1.49 8.13 -2.39 -0.02 1.47 16 25 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.00 0.08 7.75 -2.39 -0.02 0.07 16 28 H -0.02 -1.53 8.14 -2.39 -0.02 -1.55 16 29 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 30 H 0.34 10.53 7.98 -89.70 -0.72 9.81 16 31 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 32 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -67.79 310.38 2.73 -65.06 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 0.28 Total: 17.70 kcal Atomic # 6 Polarization: -49.12 SS G_CDS: 2.93 Total: -46.19 kcal Atomic # 7 Polarization: -82.14 SS G_CDS: -2.51 Total: -84.65 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -67.79 2.73 -65.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487944.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.929 kcal (2) G-P(sol) polarization free energy of solvation -67.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds