Wall clock time and date at job start Sun Mar 29 2020 21:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47010 * 2 1 4 4 C 1.53001 * 109.46725 * 239.99719 * 2 1 3 5 5 C 1.53002 * 109.46608 * 175.00031 * 4 2 1 6 6 C 1.50706 * 109.46875 * 179.97438 * 5 4 2 7 7 H 1.08001 * 119.99914 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99556 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00245 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99425 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47413 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.46939 * 120.00343 * 10 8 6 13 13 H 1.48498 * 109.47241 * 239.99906 * 10 8 6 14 14 N 1.46904 * 109.47105 * 119.99787 * 2 1 3 15 15 C 1.47942 * 110.99832 * 56.65781 * 14 2 1 16 16 C 1.54936 * 104.81716 * 213.79304 * 15 14 2 17 17 C 1.55207 * 101.69568 * 36.91845 * 16 15 14 18 18 C 1.47135 * 110.99884 * 296.01797 * 14 2 1 19 19 C 1.52679 * 121.04435 * 338.94734 * 18 14 2 20 20 C 1.52701 * 120.99936 * 267.35845 * 18 14 2 21 21 H 1.08997 * 109.46964 * 52.21992 * 1 2 3 22 22 H 1.09006 * 109.47144 * 172.21525 * 1 2 3 23 23 H 1.08999 * 109.47254 * 292.21494 * 1 2 3 24 24 H 1.08997 * 109.47448 * 294.99520 * 4 2 1 25 25 H 1.08992 * 109.47559 * 55.00292 * 4 2 1 26 26 H 1.08997 * 109.47513 * 300.00104 * 5 4 2 27 27 H 1.09003 * 109.47327 * 60.00506 * 5 4 2 28 28 H 0.97004 * 119.99217 * 180.02562 * 9 8 6 29 29 H 1.09000 * 110.37060 * 332.62789 * 15 14 2 30 30 H 1.09000 * 110.37006 * 94.95686 * 15 14 2 31 31 H 1.08994 * 110.98042 * 278.81489 * 16 15 14 32 32 H 1.08999 * 111.01323 * 155.03283 * 16 15 14 33 33 H 1.09007 * 110.72426 * 206.24155 * 17 16 15 34 34 H 1.09000 * 110.88086 * 83.01986 * 17 16 15 35 35 H 1.09002 * 117.50635 * 357.11934 * 19 18 14 36 36 H 1.08996 * 117.50696 * 142.18601 * 19 18 14 37 37 H 1.09008 * 117.50770 * 217.88767 * 20 18 14 38 38 H 1.09000 * 117.50765 * 2.95643 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3137 6 6 4.0672 -1.3244 -2.5438 7 1 3.3687 -1.8048 -3.2129 8 6 5.4185 -1.3606 -2.8155 9 7 6.2689 -0.7752 -2.0010 10 14 6.0411 -2.2413 -4.3407 11 1 4.8912 -2.8138 -5.0858 12 1 6.7635 -1.2771 -5.2088 13 1 6.9636 -3.3337 -3.9396 14 7 2.0197 -0.6925 1.1995 15 6 1.4807 -2.0681 1.2746 16 6 1.2987 -2.3402 2.7890 17 6 0.8320 -0.9525 3.3041 18 6 1.6274 0.0276 2.4211 19 6 1.2547 1.5076 2.3774 20 6 2.5532 1.0633 3.0552 21 1 -0.3633 0.6296 -0.8122 22 1 -0.3634 -1.0182 -0.1392 23 1 -0.3634 0.3885 0.9514 24 1 1.7517 -1.7716 -1.2055 25 1 1.6054 -0.2619 -2.1369 26 1 3.8532 0.4369 -1.3573 27 1 3.9995 -1.0729 -0.4260 28 1 7.2195 -0.8004 -2.1925 29 1 0.5215 -2.1284 0.7604 30 1 2.1881 -2.7769 0.8441 31 1 2.2430 -2.6303 3.2497 32 1 0.5340 -3.0977 2.9609 33 1 1.0924 -0.8235 4.3548 34 1 -0.2400 -0.8231 3.1551 35 1 1.3370 2.0193 1.4184 36 1 0.4399 1.8408 3.0201 37 1 2.5924 1.1041 4.1438 38 1 3.4895 1.2826 2.5421 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172491711.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:43 Heat of formation + Delta-G solvation = 18.464696 kcal Electronic energy + Delta-G solvation = -16032.220663 eV Core-core repulsion = 13681.908197 eV Total energy + Delta-G solvation = -2350.312466 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.86500 -35.31234 -33.80018 -32.63586 -29.78450 -28.41124 -25.96849 -25.03450 -22.28906 -21.98624 -21.12591 -19.64734 -18.03020 -16.14791 -15.85754 -15.59091 -14.79366 -14.39195 -13.65879 -13.47318 -12.88402 -12.78260 -12.53411 -12.21054 -11.84517 -11.54834 -11.34092 -11.24659 -11.04105 -10.94649 -10.84524 -10.66188 -10.40330 -10.12039 -10.02136 -9.82484 -9.56828 -9.14565 -8.83925 -8.21732 -7.60119 -5.86990 -3.88420 3.36990 3.44234 3.48282 3.94927 4.24725 4.55141 4.74974 4.88269 5.03986 5.28321 5.33983 5.43781 5.48338 5.53059 5.60602 5.74582 5.76739 5.83470 5.89979 6.03949 6.05602 6.13098 6.21491 6.27584 6.38280 6.40767 6.45020 6.49670 6.70507 6.92683 7.31678 7.52892 7.65044 7.86764 8.08722 8.23839 8.58731 9.20786 9.74231 11.23964 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.037069 B = 0.006737 C = 0.006654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.172025 B = 4154.883008 C = 4207.046927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.076 3.924 3 H 0.077 0.923 4 C -0.102 4.102 5 C 0.030 3.970 6 C -0.518 4.518 7 H 0.051 0.949 8 C 0.056 3.944 9 N -0.893 5.893 10 Si 0.886 3.114 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.285 1.285 14 N -0.476 5.476 15 C 0.042 3.958 16 C -0.128 4.128 17 C -0.100 4.100 18 C 0.038 3.962 19 C -0.193 4.193 20 C -0.160 4.160 21 H 0.055 0.945 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.047 0.953 25 H 0.048 0.952 26 H 0.008 0.992 27 H 0.031 0.969 28 H 0.257 0.743 29 H 0.051 0.949 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.831 0.974 10.195 15.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.031 4.031 3 H 0.095 0.905 4 C -0.140 4.140 5 C -0.007 4.007 6 C -0.557 4.557 7 H 0.069 0.931 8 C -0.144 4.144 9 N -0.533 5.533 10 Si 0.715 3.285 11 H -0.199 1.199 12 H -0.212 1.212 13 H -0.211 1.211 14 N -0.198 5.198 15 C -0.085 4.085 16 C -0.166 4.166 17 C -0.138 4.138 18 C -0.053 4.053 19 C -0.231 4.231 20 C -0.198 4.198 21 H 0.074 0.926 22 H 0.073 0.927 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.027 0.973 27 H 0.049 0.951 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.117 0.883 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -11.093 0.968 10.146 15.065 hybrid contribution -0.370 -0.328 -0.868 0.999 sum -11.463 0.640 9.279 14.762 Atomic orbital electron populations 1.22552 0.98686 1.01562 1.01473 1.21973 0.91266 0.98776 0.91131 0.90508 1.21705 1.00794 0.98279 0.93209 1.18998 0.88094 0.96651 0.96982 1.21382 0.91862 1.33994 1.08465 0.93078 1.25003 0.97147 0.95790 0.96495 1.69996 1.02109 1.44345 1.36855 0.86632 0.78816 0.79541 0.83556 1.19897 1.21157 1.21127 1.63273 1.55803 1.01038 0.99691 1.23099 0.99079 0.90978 0.95388 1.22682 1.01414 0.96163 0.96335 1.22209 0.98648 0.94348 0.98617 1.21999 1.00360 0.89020 0.93896 1.23312 0.99200 0.97698 1.02914 1.23071 0.95199 1.02442 0.99048 0.92621 0.92698 0.92775 0.93429 0.93363 0.97335 0.95087 0.93300 0.93071 0.89738 0.90683 0.91310 0.91299 0.91532 0.88328 0.89345 0.89166 0.88111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.69 8.34 37.16 0.31 -2.38 16 2 C 0.08 1.36 1.93 -67.71 -0.13 1.23 16 3 H 0.08 1.44 6.41 -51.93 -0.33 1.10 16 4 C -0.10 -2.17 4.54 -26.73 -0.12 -2.29 16 5 C 0.03 0.80 4.86 -27.88 -0.14 0.66 16 6 C -0.52 -15.17 9.11 -34.44 -0.31 -15.48 16 7 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 9 N -0.89 -27.70 13.29 55.43 0.74 -26.97 16 10 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 11 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 14 N -0.48 -8.32 4.63 -208.54 -0.97 -9.29 16 15 C 0.04 0.66 5.20 -2.23 -0.01 0.65 16 16 C -0.13 -1.63 7.08 -24.54 -0.17 -1.80 16 17 C -0.10 -1.21 6.67 -25.02 -0.17 -1.38 16 18 C 0.04 0.56 1.84 -131.25 -0.24 0.32 16 19 C -0.19 -2.55 8.12 -26.86 -0.22 -2.76 16 20 C -0.16 -2.24 10.36 -26.85 -0.28 -2.52 16 21 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.05 0.78 6.23 -51.93 -0.32 0.46 16 23 H 0.05 0.73 6.03 -51.93 -0.31 0.41 16 24 H 0.05 1.00 7.10 -51.93 -0.37 0.63 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.03 0.89 7.75 -51.93 -0.40 0.49 16 28 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.05 0.76 5.46 -51.93 -0.28 0.48 16 30 H 0.08 1.47 8.10 -51.93 -0.42 1.05 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.75 8.11 -51.93 -0.42 0.33 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.10 1.39 6.24 -51.93 -0.32 1.07 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.09 1.08 8.14 -51.92 -0.42 0.65 16 38 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 LS Contribution 293.04 15.07 4.42 4.42 Total: -1.00 -30.92 293.04 -8.95 -39.86 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -6.54 Total: -1.05 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: -1.58 Total: -24.20 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: -0.23 Total: -36.25 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.92 -8.95 -39.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491711.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.330 kcal (2) G-P(sol) polarization free energy of solvation -30.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds