Wall clock time and date at job start Sun Mar 29 2020 21:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47010 * 2 1 4 4 C 1.53001 * 109.46725 * 239.99719 * 2 1 3 5 5 C 1.53002 * 109.46608 * 175.00031 * 4 2 1 6 6 C 1.50706 * 109.46875 * 179.97438 * 5 4 2 7 7 H 1.08001 * 119.99914 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99556 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00245 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99425 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47413 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.46939 * 120.00343 * 10 8 6 13 13 H 1.48498 * 109.47241 * 239.99906 * 10 8 6 14 14 N 1.46904 * 109.47105 * 119.99787 * 2 1 3 15 15 C 1.47942 * 110.99832 * 56.65781 * 14 2 1 16 16 C 1.54936 * 104.81716 * 213.79304 * 15 14 2 17 17 C 1.55207 * 101.69568 * 36.91845 * 16 15 14 18 18 C 1.47135 * 110.99884 * 296.01797 * 14 2 1 19 19 C 1.52679 * 121.04435 * 338.94734 * 18 14 2 20 20 C 1.52701 * 120.99936 * 267.35845 * 18 14 2 21 21 H 1.08997 * 109.46964 * 52.21992 * 1 2 3 22 22 H 1.09006 * 109.47144 * 172.21525 * 1 2 3 23 23 H 1.08999 * 109.47254 * 292.21494 * 1 2 3 24 24 H 1.08997 * 109.47448 * 294.99520 * 4 2 1 25 25 H 1.08992 * 109.47559 * 55.00292 * 4 2 1 26 26 H 1.08997 * 109.47513 * 300.00104 * 5 4 2 27 27 H 1.09003 * 109.47327 * 60.00506 * 5 4 2 28 28 H 0.97004 * 119.99217 * 180.02562 * 9 8 6 29 29 H 1.09000 * 110.37060 * 332.62789 * 15 14 2 30 30 H 1.09000 * 110.37006 * 94.95686 * 15 14 2 31 31 H 1.08994 * 110.98042 * 278.81489 * 16 15 14 32 32 H 1.08999 * 111.01323 * 155.03283 * 16 15 14 33 33 H 1.09007 * 110.72426 * 206.24155 * 17 16 15 34 34 H 1.09000 * 110.88086 * 83.01986 * 17 16 15 35 35 H 1.09002 * 117.50635 * 357.11934 * 19 18 14 36 36 H 1.08996 * 117.50696 * 142.18601 * 19 18 14 37 37 H 1.09008 * 117.50770 * 217.88767 * 20 18 14 38 38 H 1.09000 * 117.50765 * 2.95643 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3137 6 6 4.0672 -1.3244 -2.5438 7 1 3.3687 -1.8048 -3.2129 8 6 5.4185 -1.3606 -2.8155 9 7 6.2689 -0.7752 -2.0010 10 14 6.0411 -2.2413 -4.3407 11 1 4.8912 -2.8138 -5.0858 12 1 6.7635 -1.2771 -5.2088 13 1 6.9636 -3.3337 -3.9396 14 7 2.0197 -0.6925 1.1995 15 6 1.4807 -2.0681 1.2746 16 6 1.2987 -2.3402 2.7890 17 6 0.8320 -0.9525 3.3041 18 6 1.6274 0.0276 2.4211 19 6 1.2547 1.5076 2.3774 20 6 2.5532 1.0633 3.0552 21 1 -0.3633 0.6296 -0.8122 22 1 -0.3634 -1.0182 -0.1392 23 1 -0.3634 0.3885 0.9514 24 1 1.7517 -1.7716 -1.2055 25 1 1.6054 -0.2619 -2.1369 26 1 3.8532 0.4369 -1.3573 27 1 3.9995 -1.0729 -0.4260 28 1 7.2195 -0.8004 -2.1925 29 1 0.5215 -2.1284 0.7604 30 1 2.1881 -2.7769 0.8441 31 1 2.2430 -2.6303 3.2497 32 1 0.5340 -3.0977 2.9609 33 1 1.0924 -0.8235 4.3548 34 1 -0.2400 -0.8231 3.1551 35 1 1.3370 2.0193 1.4184 36 1 0.4399 1.8408 3.0201 37 1 2.5924 1.1041 4.1438 38 1 3.4895 1.2826 2.5421 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172491711.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:43 Heat of formation + Delta-G solvation = -0.262056 kcal Electronic energy + Delta-G solvation = -16033.032716 eV Core-core repulsion = 13681.908197 eV Total energy + Delta-G solvation = -2351.124519 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.06720 -36.78872 -35.23276 -34.48018 -31.64508 -29.67624 -27.10274 -27.01690 -23.57028 -23.33582 -22.71043 -21.01982 -19.33941 -18.37765 -17.14357 -16.76874 -16.52316 -15.89594 -14.90944 -14.83198 -14.59773 -14.23561 -13.95609 -13.60404 -13.43127 -13.04919 -12.88171 -12.65294 -12.45284 -12.35497 -12.32157 -12.08981 -11.90451 -11.69874 -11.46971 -11.28444 -11.14305 -10.94724 -10.76198 -10.52298 -8.84741 -8.16066 -6.27475 1.38065 1.38965 1.52156 2.41702 2.81361 3.09960 3.16060 3.68421 3.80510 3.95728 4.08530 4.18383 4.28363 4.33784 4.44160 4.49870 4.66673 4.72068 4.78882 4.90716 4.92915 4.97325 4.99968 5.06701 5.08015 5.16827 5.19239 5.29321 5.31793 5.38233 5.46018 5.56470 5.84841 5.97498 6.27257 6.33127 6.38444 6.92217 7.41014 8.95544 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.037069 B = 0.006737 C = 0.006654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.172025 B = 4154.883008 C = 4207.046927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.084 3.916 3 H 0.060 0.940 4 C -0.091 4.091 5 C 0.042 3.958 6 C -0.543 4.543 7 H 0.056 0.944 8 C -0.002 4.002 9 N -0.933 5.933 10 Si 0.964 3.036 11 H -0.262 1.262 12 H -0.278 1.278 13 H -0.278 1.278 14 N -0.512 5.512 15 C 0.039 3.961 16 C -0.121 4.121 17 C -0.089 4.089 18 C 0.024 3.976 19 C -0.177 4.177 20 C -0.170 4.170 21 H 0.063 0.937 22 H 0.060 0.940 23 H 0.071 0.929 24 H 0.049 0.951 25 H 0.051 0.949 26 H -0.025 1.025 27 H -0.001 1.001 28 H 0.261 0.739 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.799 0.408 10.609 17.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.025 4.025 3 H 0.078 0.922 4 C -0.129 4.129 5 C 0.005 3.995 6 C -0.581 4.581 7 H 0.074 0.926 8 C -0.200 4.200 9 N -0.573 5.573 10 Si 0.788 3.212 11 H -0.186 1.186 12 H -0.203 1.203 13 H -0.204 1.204 14 N -0.234 5.234 15 C -0.089 4.089 16 C -0.159 4.159 17 C -0.128 4.128 18 C -0.066 4.066 19 C -0.215 4.215 20 C -0.208 4.208 21 H 0.082 0.918 22 H 0.079 0.921 23 H 0.090 0.910 24 H 0.067 0.933 25 H 0.069 0.931 26 H -0.007 1.007 27 H 0.017 0.983 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.114 0.886 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.076 0.403 10.564 16.815 hybrid contribution 0.320 -0.123 -0.988 1.045 sum -12.756 0.280 9.576 15.953 Atomic orbital electron populations 1.22403 0.95463 1.02283 1.02812 1.21728 0.93654 0.97158 0.89913 0.92225 1.21517 0.96739 0.99013 0.95601 1.18780 0.91957 0.93769 0.94975 1.21819 0.92573 1.34419 1.09331 0.92587 1.25994 0.97372 0.96480 1.00113 1.70145 1.02585 1.45580 1.39011 0.85424 0.78414 0.78283 0.79058 1.18587 1.20321 1.20372 1.63103 1.57450 1.02206 1.00682 1.23077 0.98456 0.89507 0.97811 1.22662 1.01935 0.97614 0.93698 1.22211 0.99160 0.92476 0.98907 1.22209 1.01149 0.90007 0.93236 1.23331 0.99281 0.96373 1.02564 1.23096 0.94301 1.03177 1.00275 0.91806 0.92078 0.90998 0.93273 0.93077 1.00696 0.98300 0.92997 0.91940 0.92908 0.91699 0.88563 0.89466 0.89649 0.89786 0.86296 0.86623 0.91439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.64 8.34 71.98 0.60 -4.04 16 2 C 0.08 3.00 1.93 44.92 0.09 3.09 16 3 H 0.06 2.32 6.41 -2.39 -0.02 2.30 16 4 C -0.09 -3.97 4.54 30.60 0.14 -3.84 16 5 C 0.04 2.39 4.86 29.85 0.15 2.53 16 6 C -0.54 -32.64 9.11 25.60 0.23 -32.41 16 7 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 8 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 9 N -0.93 -59.60 13.29 21.45 0.28 -59.32 16 10 Si 0.96 46.09 29.54 68.60 2.03 48.12 16 11 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 13 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 14 N -0.51 -18.09 4.63 -813.70 -3.77 -21.86 16 15 C 0.04 1.20 5.20 86.76 0.45 1.65 16 16 C -0.12 -2.84 7.08 32.01 0.23 -2.62 16 17 C -0.09 -1.88 6.67 31.70 0.21 -1.67 16 18 C 0.02 0.68 1.84 3.63 0.01 0.69 16 19 C -0.18 -4.37 8.12 30.51 0.25 -4.12 16 20 C -0.17 -4.72 10.36 30.52 0.32 -4.40 16 21 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 22 H 0.06 1.59 6.23 -2.38 -0.01 1.58 16 23 H 0.07 1.71 6.03 -2.39 -0.01 1.69 16 24 H 0.05 2.11 7.10 -2.39 -0.02 2.09 16 25 H 0.05 2.16 8.14 -2.39 -0.02 2.15 16 26 H -0.03 -1.57 8.14 -2.39 -0.02 -1.59 16 27 H 0.00 -0.09 7.75 -2.39 -0.02 -0.11 16 28 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 29 H 0.06 1.77 5.46 -2.39 -0.01 1.75 16 30 H 0.05 1.92 8.10 -2.39 -0.02 1.90 16 31 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.10 1.73 8.14 -2.39 -0.02 1.72 16 33 H 0.09 1.55 8.11 -2.38 -0.02 1.53 16 34 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.08 2.33 6.24 -2.39 -0.01 2.31 16 36 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.12 2.55 8.14 -2.38 -0.02 2.53 16 38 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -69.04 293.04 2.67 -66.37 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: 1.01 Total: 11.51 kcal Atomic # 6 Polarization: -47.94 SS G_CDS: 3.13 Total: -44.81 kcal Atomic # 7 Polarization: -77.70 SS G_CDS: -3.49 Total: -81.18 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -69.04 2.67 -66.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491711.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.106 kcal (2) G-P(sol) polarization free energy of solvation -69.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds