Wall clock time and date at job start Sun Mar 29 2020 21:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46831 * 2 1 4 4 C 1.53000 * 109.46974 * 120.00004 * 2 1 3 5 5 C 1.53002 * 109.46520 * 185.00122 * 4 2 1 6 6 C 1.50701 * 109.46756 * 179.97438 * 5 4 2 7 7 H 1.08002 * 119.99962 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99913 * 179.97438 * 6 5 4 9 9 N 1.31507 * 120.00078 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99648 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47098 * 60.00717 * 10 8 6 12 12 H 1.48504 * 109.46626 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47230 * 300.00086 * 10 8 6 14 14 N 1.46904 * 109.46913 * 240.00410 * 2 1 3 15 15 C 1.48619 * 110.99906 * 315.06301 * 14 2 1 16 16 C 1.54964 * 103.29273 * 159.30394 * 15 14 2 17 17 C 1.54685 * 102.94650 * 322.77743 * 16 15 14 18 18 C 1.47555 * 111.00191 * 72.33117 * 14 2 1 19 19 C 1.52657 * 120.79453 * 358.73267 * 18 14 2 20 20 C 1.52643 * 120.82889 * 70.16093 * 18 14 2 21 21 H 1.09006 * 109.46656 * 188.47684 * 1 2 3 22 22 H 1.08995 * 109.47334 * 308.47506 * 1 2 3 23 23 H 1.09004 * 109.47473 * 68.48216 * 1 2 3 24 24 H 1.08992 * 109.47081 * 305.00105 * 4 2 1 25 25 H 1.08999 * 109.47280 * 65.00557 * 4 2 1 26 26 H 1.08999 * 109.47082 * 299.99893 * 5 4 2 27 27 H 1.08999 * 109.46989 * 60.00257 * 5 4 2 28 28 H 0.97000 * 120.00296 * 179.97438 * 9 8 6 29 29 H 1.09003 * 110.65351 * 40.85906 * 15 14 2 30 30 H 1.08994 * 110.80022 * 277.82245 * 15 14 2 31 31 H 1.09004 * 110.71742 * 204.41558 * 16 15 14 32 32 H 1.09000 * 110.71774 * 81.14784 * 16 15 14 33 33 H 1.08991 * 110.34561 * 263.05848 * 17 16 15 34 34 H 1.09005 * 110.33823 * 140.80208 * 17 16 15 35 35 H 1.09002 * 117.51026 * 217.70589 * 19 18 14 36 36 H 1.09002 * 117.50638 * 2.78167 * 19 18 14 37 37 H 1.09005 * 117.50514 * 357.27598 * 20 18 14 38 38 H 1.09000 * 117.50995 * 142.34754 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6132 1.3136 6 6 4.0672 -1.3231 2.5444 7 1 3.3687 -1.8036 3.2135 8 6 5.4185 -1.3600 2.8157 9 7 6.2690 -0.7753 2.0007 10 14 6.0411 -2.2405 4.3410 11 1 5.6480 -3.6713 4.2817 12 1 7.5211 -2.1356 4.4036 13 1 5.4494 -1.6142 5.5504 14 7 2.0197 -0.6924 -1.1995 15 6 1.2712 -1.9559 -1.4280 16 6 1.5132 -2.2467 -2.9307 17 6 1.4874 -0.8362 -3.5652 18 6 1.8017 0.1254 -2.4082 19 6 1.1179 1.4872 -2.3176 20 6 2.6098 1.3980 -2.6478 21 1 -0.3633 -1.0165 0.1515 22 1 -0.3634 0.6393 0.8045 23 1 -0.3634 0.3769 -0.9560 24 1 1.6054 -0.2618 2.1369 25 1 1.7517 -1.7715 1.2056 26 1 3.9994 -1.0727 0.4259 27 1 3.8531 0.4371 1.3573 28 1 7.2197 -0.8010 2.1917 29 1 0.2086 -1.8144 -1.2301 30 1 1.6721 -2.7602 -0.8113 31 1 0.7142 -2.8670 -3.3370 32 1 2.4839 -2.7193 -3.0805 33 1 0.5008 -0.6238 -3.9768 34 1 2.2481 -0.7561 -4.3417 35 1 0.4394 1.7645 -3.1244 36 1 0.8423 1.8471 -1.3263 37 1 3.3156 1.6994 -1.8737 38 1 2.9127 1.6168 -3.6717 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172491712.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:45 Heat of formation + Delta-G solvation = 21.499461 kcal Electronic energy + Delta-G solvation = -16030.898387 eV Core-core repulsion = 13680.717519 eV Total energy + Delta-G solvation = -2350.180869 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.93159 -35.20028 -33.90201 -32.68674 -29.87732 -28.33219 -26.00733 -25.03840 -22.18965 -22.15755 -21.03659 -19.58143 -18.13671 -16.13169 -15.94712 -15.49348 -14.80371 -14.37890 -13.59781 -13.47828 -12.99231 -12.90896 -12.55230 -12.08973 -11.81607 -11.52728 -11.20515 -11.10548 -11.05675 -11.00327 -10.86220 -10.70977 -10.43135 -10.18764 -9.96910 -9.84541 -9.58258 -9.13966 -8.86164 -8.20654 -7.66662 -5.85879 -3.87386 3.39860 3.43972 3.46483 3.92143 4.32946 4.55770 4.72575 4.91949 5.03380 5.27794 5.33135 5.38993 5.49157 5.53364 5.58143 5.73336 5.80375 5.81934 5.87741 6.00834 6.08525 6.13875 6.19843 6.28535 6.31906 6.39775 6.42821 6.46947 6.70621 6.89118 7.32452 7.42934 7.61002 7.86809 8.09838 8.25523 8.59659 9.21389 9.74998 11.25074 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.035762 B = 0.006781 C = 0.006729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.765993 B = 4128.448879 C = 4160.367829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.070 3.930 3 H 0.076 0.924 4 C -0.098 4.098 5 C 0.030 3.970 6 C -0.520 4.520 7 H 0.050 0.950 8 C 0.057 3.943 9 N -0.894 5.894 10 Si 0.887 3.113 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.279 1.279 14 N -0.460 5.460 15 C 0.031 3.969 16 C -0.123 4.123 17 C -0.089 4.089 18 C 0.034 3.966 19 C -0.209 4.209 20 C -0.160 4.160 21 H 0.057 0.943 22 H 0.055 0.945 23 H 0.056 0.944 24 H 0.047 0.953 25 H 0.046 0.954 26 H 0.032 0.968 27 H 0.007 0.993 28 H 0.258 0.742 29 H 0.051 0.949 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.578 1.262 -10.363 15.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.039 4.039 3 H 0.094 0.906 4 C -0.136 4.136 5 C -0.007 4.007 6 C -0.558 4.558 7 H 0.068 0.932 8 C -0.144 4.144 9 N -0.533 5.533 10 Si 0.715 3.285 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.204 1.204 14 N -0.181 5.181 15 C -0.097 4.097 16 C -0.161 4.161 17 C -0.127 4.127 18 C -0.058 4.058 19 C -0.248 4.248 20 C -0.198 4.198 21 H 0.076 0.924 22 H 0.074 0.926 23 H 0.075 0.925 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.050 0.950 27 H 0.026 0.974 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.103 0.897 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.816 1.171 -10.272 14.962 hybrid contribution -0.378 -0.176 0.843 0.941 sum -11.194 0.995 -9.429 14.670 Atomic orbital electron populations 1.22635 0.98539 1.01826 1.01591 1.22009 0.91444 0.98743 0.91675 0.90593 1.21645 1.00742 0.98246 0.92981 1.18985 0.88128 0.96555 0.96991 1.21309 0.91852 1.34202 1.08477 0.93188 1.24995 0.97119 0.95777 0.96481 1.69969 1.02194 1.44283 1.36898 0.86747 0.77590 0.80282 0.83858 1.20384 1.21379 1.20429 1.64647 1.50925 1.02646 0.99846 1.23332 0.96927 0.93417 0.96003 1.22476 1.02091 0.96160 0.95356 1.21809 1.00907 0.93960 0.96020 1.22170 1.02925 0.87656 0.93005 1.23577 0.95975 1.02261 1.02972 1.23011 0.93906 1.00470 1.02396 0.92404 0.92557 0.92470 0.93438 0.93495 0.95008 0.97440 0.93187 0.93074 0.89698 0.91510 0.90650 0.91761 0.91106 0.89409 0.88128 0.88144 0.88931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.71 7.31 37.16 0.27 -2.44 16 2 C 0.07 1.24 1.86 -67.71 -0.13 1.11 16 3 H 0.08 1.42 6.54 -51.93 -0.34 1.08 16 4 C -0.10 -2.11 4.67 -26.73 -0.12 -2.23 16 5 C 0.03 0.82 4.86 -27.88 -0.14 0.69 16 6 C -0.52 -15.28 9.11 -34.44 -0.31 -15.60 16 7 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 9 N -0.89 -27.79 13.29 55.43 0.74 -27.05 16 10 Si 0.89 22.31 29.54 -169.99 -5.02 17.29 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 N -0.46 -8.05 4.67 -207.90 -0.97 -9.02 16 15 C 0.03 0.47 5.64 -1.83 -0.01 0.46 16 16 C -0.12 -1.57 7.07 -24.81 -0.18 -1.75 16 17 C -0.09 -1.11 6.65 -25.49 -0.17 -1.28 16 18 C 0.03 0.50 2.38 -131.24 -0.31 0.19 16 19 C -0.21 -2.75 7.96 -26.88 -0.21 -2.97 16 20 C -0.16 -2.31 10.15 -26.88 -0.27 -2.59 16 21 H 0.06 0.82 6.49 -51.93 -0.34 0.48 16 22 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.06 0.76 5.70 -51.93 -0.30 0.47 16 24 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 25 H 0.05 1.00 7.32 -51.93 -0.38 0.62 16 26 H 0.03 0.92 7.75 -51.93 -0.40 0.52 16 27 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 29 H 0.05 0.72 5.39 -51.93 -0.28 0.44 16 30 H 0.08 1.40 7.76 -51.93 -0.40 1.00 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.10 1.38 5.37 -51.93 -0.28 1.11 16 37 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 38 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 291.72 15.07 4.40 4.40 Total: -1.00 -31.08 291.72 -9.02 -40.10 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -6.49 Total: -0.90 kcal Atomic # 6 Polarization: -23.13 SS G_CDS: -1.68 Total: -24.81 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: -0.23 Total: -36.07 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.08 -9.02 -40.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491712.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.600 kcal (2) G-P(sol) polarization free energy of solvation -31.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds