Wall clock time and date at job start Sun Mar 29 2020 21:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46831 * 2 1 4 4 C 1.53000 * 109.46974 * 120.00004 * 2 1 3 5 5 C 1.53002 * 109.46520 * 185.00122 * 4 2 1 6 6 C 1.50701 * 109.46756 * 179.97438 * 5 4 2 7 7 H 1.08002 * 119.99962 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99913 * 179.97438 * 6 5 4 9 9 N 1.31507 * 120.00078 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99648 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47098 * 60.00717 * 10 8 6 12 12 H 1.48504 * 109.46626 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47230 * 300.00086 * 10 8 6 14 14 N 1.46904 * 109.46913 * 240.00410 * 2 1 3 15 15 C 1.48619 * 110.99906 * 315.06301 * 14 2 1 16 16 C 1.54964 * 103.29273 * 159.30394 * 15 14 2 17 17 C 1.54685 * 102.94650 * 322.77743 * 16 15 14 18 18 C 1.47555 * 111.00191 * 72.33117 * 14 2 1 19 19 C 1.52657 * 120.79453 * 358.73267 * 18 14 2 20 20 C 1.52643 * 120.82889 * 70.16093 * 18 14 2 21 21 H 1.09006 * 109.46656 * 188.47684 * 1 2 3 22 22 H 1.08995 * 109.47334 * 308.47506 * 1 2 3 23 23 H 1.09004 * 109.47473 * 68.48216 * 1 2 3 24 24 H 1.08992 * 109.47081 * 305.00105 * 4 2 1 25 25 H 1.08999 * 109.47280 * 65.00557 * 4 2 1 26 26 H 1.08999 * 109.47082 * 299.99893 * 5 4 2 27 27 H 1.08999 * 109.46989 * 60.00257 * 5 4 2 28 28 H 0.97000 * 120.00296 * 179.97438 * 9 8 6 29 29 H 1.09003 * 110.65351 * 40.85906 * 15 14 2 30 30 H 1.08994 * 110.80022 * 277.82245 * 15 14 2 31 31 H 1.09004 * 110.71742 * 204.41558 * 16 15 14 32 32 H 1.09000 * 110.71774 * 81.14784 * 16 15 14 33 33 H 1.08991 * 110.34561 * 263.05848 * 17 16 15 34 34 H 1.09005 * 110.33823 * 140.80208 * 17 16 15 35 35 H 1.09002 * 117.51026 * 217.70589 * 19 18 14 36 36 H 1.09002 * 117.50638 * 2.78167 * 19 18 14 37 37 H 1.09005 * 117.50514 * 357.27598 * 20 18 14 38 38 H 1.09000 * 117.50995 * 142.34754 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6132 1.3136 6 6 4.0672 -1.3231 2.5444 7 1 3.3687 -1.8036 3.2135 8 6 5.4185 -1.3600 2.8157 9 7 6.2690 -0.7753 2.0007 10 14 6.0411 -2.2405 4.3410 11 1 5.6480 -3.6713 4.2817 12 1 7.5211 -2.1356 4.4036 13 1 5.4494 -1.6142 5.5504 14 7 2.0197 -0.6924 -1.1995 15 6 1.2712 -1.9559 -1.4280 16 6 1.5132 -2.2467 -2.9307 17 6 1.4874 -0.8362 -3.5652 18 6 1.8017 0.1254 -2.4082 19 6 1.1179 1.4872 -2.3176 20 6 2.6098 1.3980 -2.6478 21 1 -0.3633 -1.0165 0.1515 22 1 -0.3634 0.6393 0.8045 23 1 -0.3634 0.3769 -0.9560 24 1 1.6054 -0.2618 2.1369 25 1 1.7517 -1.7715 1.2056 26 1 3.9994 -1.0727 0.4259 27 1 3.8531 0.4371 1.3573 28 1 7.2197 -0.8010 2.1917 29 1 0.2086 -1.8144 -1.2301 30 1 1.6721 -2.7602 -0.8113 31 1 0.7142 -2.8670 -3.3370 32 1 2.4839 -2.7193 -3.0805 33 1 0.5008 -0.6238 -3.9768 34 1 2.2481 -0.7561 -4.3417 35 1 0.4394 1.7645 -3.1244 36 1 0.8423 1.8471 -1.3263 37 1 3.3156 1.6994 -1.8737 38 1 2.9127 1.6168 -3.6717 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172491712.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:45 Heat of formation + Delta-G solvation = 2.630133 kcal Electronic energy + Delta-G solvation = -16031.716623 eV Core-core repulsion = 13680.717519 eV Total energy + Delta-G solvation = -2350.999104 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.13264 -36.71149 -35.22828 -34.59487 -31.74420 -29.60457 -27.27179 -26.87709 -23.66756 -23.29637 -22.69487 -20.92329 -19.44177 -18.37495 -17.22555 -16.71274 -16.49361 -15.89606 -14.87263 -14.72362 -14.63042 -14.38134 -14.11688 -13.50005 -13.38215 -13.11225 -12.83274 -12.55425 -12.42758 -12.29194 -12.20412 -12.17526 -11.97715 -11.72909 -11.49201 -11.26052 -11.14707 -10.99186 -10.79764 -10.51115 -8.90437 -8.15530 -6.27187 1.37900 1.41884 1.49647 2.41985 2.79172 3.15429 3.17094 3.64869 3.80297 3.93342 4.07958 4.18091 4.26597 4.34956 4.43114 4.48167 4.68808 4.71509 4.77423 4.87409 4.91195 4.98474 4.99526 5.06175 5.06853 5.13823 5.19642 5.26635 5.29323 5.39302 5.44587 5.55568 5.84768 5.97999 6.21025 6.31437 6.33521 6.92084 7.41134 8.95717 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.035762 B = 0.006781 C = 0.006729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.765993 B = 4128.448879 C = 4160.367829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.077 3.923 3 H 0.058 0.942 4 C -0.087 4.087 5 C 0.043 3.957 6 C -0.546 4.546 7 H 0.056 0.944 8 C -0.002 4.002 9 N -0.933 5.933 10 Si 0.964 3.036 11 H -0.267 1.267 12 H -0.282 1.282 13 H -0.267 1.267 14 N -0.497 5.497 15 C 0.028 3.972 16 C -0.118 4.118 17 C -0.082 4.082 18 C 0.020 3.980 19 C -0.187 4.187 20 C -0.176 4.176 21 H 0.063 0.937 22 H 0.064 0.936 23 H 0.075 0.925 24 H 0.050 0.950 25 H 0.047 0.953 26 H -0.001 1.001 27 H -0.026 1.026 28 H 0.262 0.738 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.118 0.882 36 H 0.092 0.908 37 H 0.065 0.935 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.459 0.686 -10.805 17.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.032 4.032 3 H 0.076 0.924 4 C -0.125 4.125 5 C 0.006 3.994 6 C -0.584 4.584 7 H 0.074 0.926 8 C -0.199 4.199 9 N -0.573 5.573 10 Si 0.788 3.212 11 H -0.192 1.192 12 H -0.208 1.208 13 H -0.191 1.191 14 N -0.219 5.219 15 C -0.099 4.099 16 C -0.156 4.156 17 C -0.120 4.120 18 C -0.071 4.071 19 C -0.226 4.226 20 C -0.214 4.214 21 H 0.082 0.918 22 H 0.083 0.917 23 H 0.093 0.907 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.017 0.983 27 H -0.008 1.008 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.115 0.885 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.095 0.905 35 H 0.136 0.864 36 H 0.111 0.889 37 H 0.084 0.916 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.714 0.595 -10.717 16.639 hybrid contribution 0.270 0.030 0.974 1.011 sum -12.445 0.624 -9.743 15.817 Atomic orbital electron populations 1.22491 0.95285 1.02576 1.02968 1.21756 0.93857 0.97071 0.90474 0.92358 1.21458 0.96696 0.98928 0.95454 1.18766 0.91989 0.93689 0.94962 1.21771 0.92613 1.34666 1.09390 0.92578 1.25993 0.97331 0.96451 1.00120 1.70125 1.02603 1.45511 1.39051 0.85534 0.77045 0.79240 0.79408 1.19187 1.20761 1.19143 1.64509 1.52563 1.04095 1.00753 1.23359 0.97392 0.91746 0.97425 1.22473 1.02430 0.97014 0.93672 1.21836 1.02565 0.92596 0.95011 1.22382 1.03654 0.88293 0.92781 1.23594 0.95128 1.00346 1.03520 1.23025 0.94519 1.01375 1.02499 0.91763 0.91702 0.90665 0.93137 0.93440 0.98274 1.00780 0.92975 0.91289 0.92101 0.88465 0.92170 0.89045 0.90542 0.86405 0.88945 0.91626 0.86823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.71 7.31 71.98 0.53 -4.19 16 2 C 0.08 2.76 1.86 44.92 0.08 2.85 16 3 H 0.06 2.27 6.54 -2.39 -0.02 2.25 16 4 C -0.09 -3.85 4.67 30.60 0.14 -3.71 16 5 C 0.04 2.44 4.86 29.85 0.15 2.59 16 6 C -0.55 -32.96 9.11 25.60 0.23 -32.73 16 7 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 8 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 9 N -0.93 -59.75 13.29 21.45 0.28 -59.46 16 10 Si 0.96 46.14 29.54 68.60 2.03 48.17 16 11 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 12 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 13 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 14 N -0.50 -17.57 4.67 -811.66 -3.79 -21.36 16 15 C 0.03 0.82 5.64 86.64 0.49 1.31 16 16 C -0.12 -2.79 7.07 31.84 0.22 -2.57 16 17 C -0.08 -1.82 6.65 31.40 0.21 -1.61 16 18 C 0.02 0.56 2.38 3.40 0.01 0.57 16 19 C -0.19 -4.56 7.96 30.50 0.24 -4.31 16 20 C -0.18 -5.09 10.15 30.50 0.31 -4.78 16 21 H 0.06 1.66 6.49 -2.38 -0.02 1.64 16 22 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 23 H 0.07 1.77 5.70 -2.39 -0.01 1.76 16 24 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 25 H 0.05 2.05 7.32 -2.39 -0.02 2.04 16 26 H 0.00 -0.07 7.75 -2.39 -0.02 -0.09 16 27 H -0.03 -1.63 8.14 -2.39 -0.02 -1.65 16 28 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 29 H 0.07 1.77 5.39 -2.39 -0.01 1.76 16 30 H 0.06 2.04 7.76 -2.39 -0.02 2.02 16 31 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 35 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.09 2.41 5.37 -2.39 -0.01 2.40 16 37 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 38 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -69.36 291.72 2.61 -66.75 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 1.01 Total: 12.12 kcal Atomic # 6 Polarization: -49.29 SS G_CDS: 3.08 Total: -46.21 kcal Atomic # 7 Polarization: -77.32 SS G_CDS: -3.50 Total: -80.82 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -69.36 2.61 -66.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491712.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.379 kcal (2) G-P(sol) polarization free energy of solvation -69.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds