Wall clock time and date at job start Sun Mar 29 2020 21:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47332 * 2 1 4 4 C 1.53004 * 109.46898 * 119.99317 * 2 1 3 5 5 C 1.53000 * 109.47240 * 185.00120 * 4 2 1 6 6 C 1.50699 * 109.47518 * 180.02562 * 5 4 2 7 7 H 1.08007 * 119.99650 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00355 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99784 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 119.99976 * 0.02562 * 8 6 5 11 11 H 1.48499 * 109.47061 * 89.99774 * 10 8 6 12 12 H 1.48503 * 109.47193 * 210.00065 * 10 8 6 13 13 H 1.48505 * 109.46935 * 329.99969 * 10 8 6 14 14 N 1.46892 * 109.47733 * 239.99709 * 2 1 3 15 15 C 1.48596 * 110.99919 * 310.72658 * 14 2 1 16 16 C 1.55099 * 103.34256 * 159.37315 * 15 14 2 17 17 C 1.53976 * 102.70808 * 323.16290 * 16 15 14 18 18 C 1.52295 * 121.21084 * 165.60183 * 17 16 15 19 19 C 1.52320 * 121.17905 * 237.59181 * 17 16 15 20 20 C 1.48097 * 111.00307 * 68.18611 * 14 2 1 21 21 H 1.08996 * 109.46969 * 187.57634 * 1 2 3 22 22 H 1.09003 * 109.46505 * 67.58535 * 1 2 3 23 23 H 1.08995 * 109.47823 * 307.58320 * 1 2 3 24 24 H 1.08997 * 109.47456 * 305.00173 * 4 2 1 25 25 H 1.09005 * 109.47064 * 65.00600 * 4 2 1 26 26 H 1.09002 * 109.47519 * 300.00769 * 5 4 2 27 27 H 1.09004 * 109.47148 * 59.99966 * 5 4 2 28 28 H 0.96998 * 119.99541 * 179.97438 * 9 8 6 29 29 H 1.08996 * 110.64461 * 277.83422 * 15 14 2 30 30 H 1.08994 * 110.64255 * 40.91073 * 15 14 2 31 31 H 1.08997 * 110.76109 * 204.85774 * 16 15 14 32 32 H 1.08997 * 110.91793 * 81.54147 * 16 15 14 33 33 H 1.08996 * 117.51811 * 218.03957 * 18 17 16 34 34 H 1.09008 * 117.51720 * 3.15323 * 18 17 16 35 35 H 1.08999 * 117.51581 * 356.79275 * 19 17 16 36 36 H 1.09002 * 117.51455 * 141.92328 * 19 17 16 37 37 H 1.09004 * 109.99807 * 333.59057 * 20 14 2 38 38 H 1.09000 * 110.00010 * 94.89032 * 20 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5647 -0.6132 1.3139 6 6 4.0671 -1.3240 2.5441 7 1 3.3686 -1.8050 3.2129 8 6 5.4183 -1.3602 2.8159 9 7 5.8566 -1.9801 3.8898 10 14 6.6263 -0.5276 1.6597 11 1 6.8306 0.8799 2.0869 12 1 7.9237 -1.2492 1.6958 13 1 6.0848 -0.5516 0.2771 14 7 2.0197 -0.6925 -1.1993 15 6 1.3440 -2.0049 -1.3697 16 6 1.5523 -2.3222 -2.8735 17 6 1.4272 -0.9363 -3.5326 18 6 1.8788 -0.7013 -4.9680 19 6 0.3890 -0.6685 -4.6146 20 6 1.7124 0.0832 -2.4229 21 1 -0.3633 -1.0187 0.1355 22 1 -0.3632 0.3919 -0.9501 23 1 -0.3634 0.6267 0.8143 24 1 1.6053 -0.2616 2.1370 25 1 1.7516 -1.7715 1.2058 26 1 3.9995 -1.0727 0.4262 27 1 3.8531 0.4371 1.3575 28 1 6.8073 -2.0059 4.0809 29 1 1.8172 -2.7645 -0.7475 30 1 0.2821 -1.9233 -1.1377 31 1 0.7758 -2.9948 -3.2377 32 1 2.5414 -2.7454 -3.0485 33 1 2.3638 0.2482 -5.1943 34 1 2.2446 -1.5620 -5.5281 35 1 -0.2249 -1.5074 -4.9421 36 1 -0.1057 0.3028 -4.6084 37 1 0.8355 0.7091 -2.2570 38 1 2.5664 0.7032 -2.6956 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172495131.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:41 Heat of formation + Delta-G solvation = 21.215059 kcal Electronic energy + Delta-G solvation = -15764.375027 eV Core-core repulsion = 13414.181826 eV Total energy + Delta-G solvation = -2350.193201 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.74920 -36.70634 -33.48542 -32.03616 -30.03793 -28.74780 -26.29495 -25.09746 -22.63261 -22.42581 -20.60373 -19.32909 -18.76190 -16.56880 -15.89730 -15.45700 -14.82143 -14.36106 -14.11890 -13.76426 -13.17082 -12.79781 -12.69925 -12.38497 -12.07583 -11.84407 -11.55311 -11.39262 -11.31971 -11.09121 -10.88986 -10.74953 -10.40401 -10.29593 -9.76356 -9.67095 -9.61624 -9.39856 -8.98154 -8.40712 -7.93116 -5.92365 -3.88418 3.41229 3.48093 3.57751 3.66304 4.24747 4.40562 4.58563 4.77985 4.86034 4.94301 5.23960 5.37322 5.43643 5.48536 5.50321 5.55158 5.58736 5.67061 5.71557 5.80003 5.96811 6.00502 6.04690 6.06004 6.18406 6.25422 6.28134 6.37243 6.55976 6.72024 7.10911 7.25813 7.44672 7.54238 7.75966 7.96525 8.67783 9.13599 9.72095 11.21479 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.033706 B = 0.006981 C = 0.006358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.523794 B = 4010.075030 C = 4402.543981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.068 3.932 3 H 0.076 0.924 4 C -0.090 4.090 5 C -0.007 4.007 6 C -0.516 4.516 7 H 0.068 0.932 8 C 0.064 3.936 9 N -0.910 5.910 10 Si 0.878 3.122 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.260 1.260 14 N -0.498 5.498 15 C 0.031 3.969 16 C -0.088 4.088 17 C -0.134 4.134 18 C -0.166 4.166 19 C -0.172 4.172 20 C 0.068 3.932 21 H 0.059 0.941 22 H 0.049 0.951 23 H 0.059 0.941 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.031 0.969 27 H 0.004 0.996 28 H 0.261 0.739 29 H 0.087 0.913 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.047 0.953 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.266 3.003 -16.169 19.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.040 4.040 3 H 0.094 0.906 4 C -0.128 4.128 5 C -0.045 4.045 6 C -0.555 4.555 7 H 0.086 0.914 8 C -0.136 4.136 9 N -0.550 5.550 10 Si 0.706 3.294 11 H -0.206 1.206 12 H -0.217 1.217 13 H -0.184 1.184 14 N -0.221 5.221 15 C -0.096 4.096 16 C -0.126 4.126 17 C -0.134 4.134 18 C -0.203 4.203 19 C -0.209 4.209 20 C -0.060 4.060 21 H 0.078 0.922 22 H 0.068 0.932 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.049 0.951 27 H 0.022 0.978 28 H 0.070 0.930 29 H 0.105 0.895 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.065 0.935 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.533 2.904 -15.982 19.360 hybrid contribution -0.146 0.589 -0.551 0.820 sum -10.679 3.494 -16.533 19.990 Atomic orbital electron populations 1.22495 0.98513 1.02063 1.01278 1.22040 0.91571 0.98642 0.91782 0.90572 1.21469 0.99096 0.98919 0.93305 1.19485 0.91368 0.96015 0.97584 1.21255 0.92814 1.33925 1.07461 0.91432 1.25018 0.98443 0.95087 0.95043 1.69933 1.14414 1.44141 1.26493 0.86785 0.80385 0.79483 0.82784 1.20608 1.21707 1.18422 1.65038 1.53597 1.02567 1.00908 1.23326 0.97669 0.93005 0.95629 1.22022 1.02018 0.93827 0.94747 1.21792 1.03875 0.97535 0.90240 1.22866 0.96922 1.03066 0.97459 1.22960 0.92096 1.02723 1.03128 1.22305 0.99717 0.94862 0.89092 0.92168 0.93215 0.92209 0.92752 0.92839 0.95088 0.97772 0.92985 0.89496 0.93083 0.91535 0.90397 0.88803 0.88796 0.88923 0.89028 0.93521 0.90570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.52 8.19 37.15 0.30 -2.21 16 2 C 0.07 1.13 2.28 -67.72 -0.15 0.98 16 3 H 0.08 1.29 8.10 -51.93 -0.42 0.86 16 4 C -0.09 -1.83 4.63 -26.73 -0.12 -1.95 16 5 C -0.01 -0.18 3.93 -27.88 -0.11 -0.29 16 6 C -0.52 -15.25 9.66 -34.44 -0.33 -15.58 16 7 H 0.07 2.13 7.99 -52.48 -0.42 1.71 16 8 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 9 N -0.91 -28.98 13.96 55.43 0.77 -28.21 16 10 Si 0.88 22.74 27.47 -169.99 -4.67 18.07 16 11 H -0.28 -7.12 7.11 56.52 0.40 -6.71 16 12 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 13 H -0.26 -6.57 6.54 56.52 0.37 -6.20 16 14 N -0.50 -8.16 4.70 -222.58 -1.05 -9.20 16 15 C 0.03 0.46 5.57 -1.77 -0.01 0.45 16 16 C -0.09 -1.11 6.83 -25.11 -0.17 -1.28 16 17 C -0.13 -1.60 2.45 -154.52 -0.38 -1.98 16 18 C -0.17 -1.70 10.29 -27.02 -0.28 -1.97 16 19 C -0.17 -1.68 10.27 -27.01 -0.28 -1.96 16 20 C 0.07 0.94 6.21 -2.97 -0.02 0.92 16 21 H 0.06 0.81 6.39 -51.93 -0.33 0.48 16 22 H 0.05 0.62 6.27 -51.93 -0.33 0.29 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.05 1.09 7.09 -51.93 -0.37 0.72 16 26 H 0.03 0.80 6.81 -51.93 -0.35 0.44 16 27 H 0.00 0.10 7.57 -51.93 -0.39 -0.29 16 28 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 29 H 0.09 1.39 7.66 -51.93 -0.40 1.00 16 30 H 0.05 0.69 5.45 -51.93 -0.28 0.41 16 31 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.09 0.89 8.14 -51.92 -0.42 0.47 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.05 0.60 6.02 -51.93 -0.31 0.29 16 38 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 293.59 15.07 4.42 4.42 Total: -1.00 -31.49 293.59 -8.74 -40.23 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -6.58 Total: -2.27 kcal Atomic # 6 Polarization: -21.38 SS G_CDS: -1.65 Total: -23.03 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: -0.27 Total: -37.41 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.67 Total: 18.07 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.49 -8.74 -40.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172495131.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.446 kcal (2) G-P(sol) polarization free energy of solvation -31.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds