Wall clock time and date at job start Sun Mar 29 2020 21:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47332 * 2 1 4 4 C 1.53004 * 109.46898 * 119.99317 * 2 1 3 5 5 C 1.53000 * 109.47240 * 185.00120 * 4 2 1 6 6 C 1.50699 * 109.47518 * 180.02562 * 5 4 2 7 7 H 1.08007 * 119.99650 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00355 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99784 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 119.99976 * 0.02562 * 8 6 5 11 11 H 1.48499 * 109.47061 * 89.99774 * 10 8 6 12 12 H 1.48503 * 109.47193 * 210.00065 * 10 8 6 13 13 H 1.48505 * 109.46935 * 329.99969 * 10 8 6 14 14 N 1.46892 * 109.47733 * 239.99709 * 2 1 3 15 15 C 1.48596 * 110.99919 * 310.72658 * 14 2 1 16 16 C 1.55099 * 103.34256 * 159.37315 * 15 14 2 17 17 C 1.53976 * 102.70808 * 323.16290 * 16 15 14 18 18 C 1.52295 * 121.21084 * 165.60183 * 17 16 15 19 19 C 1.52320 * 121.17905 * 237.59181 * 17 16 15 20 20 C 1.48097 * 111.00307 * 68.18611 * 14 2 1 21 21 H 1.08996 * 109.46969 * 187.57634 * 1 2 3 22 22 H 1.09003 * 109.46505 * 67.58535 * 1 2 3 23 23 H 1.08995 * 109.47823 * 307.58320 * 1 2 3 24 24 H 1.08997 * 109.47456 * 305.00173 * 4 2 1 25 25 H 1.09005 * 109.47064 * 65.00600 * 4 2 1 26 26 H 1.09002 * 109.47519 * 300.00769 * 5 4 2 27 27 H 1.09004 * 109.47148 * 59.99966 * 5 4 2 28 28 H 0.96998 * 119.99541 * 179.97438 * 9 8 6 29 29 H 1.08996 * 110.64461 * 277.83422 * 15 14 2 30 30 H 1.08994 * 110.64255 * 40.91073 * 15 14 2 31 31 H 1.08997 * 110.76109 * 204.85774 * 16 15 14 32 32 H 1.08997 * 110.91793 * 81.54147 * 16 15 14 33 33 H 1.08996 * 117.51811 * 218.03957 * 18 17 16 34 34 H 1.09008 * 117.51720 * 3.15323 * 18 17 16 35 35 H 1.08999 * 117.51581 * 356.79275 * 19 17 16 36 36 H 1.09002 * 117.51455 * 141.92328 * 19 17 16 37 37 H 1.09004 * 109.99807 * 333.59057 * 20 14 2 38 38 H 1.09000 * 110.00010 * 94.89032 * 20 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5647 -0.6132 1.3139 6 6 4.0671 -1.3240 2.5441 7 1 3.3686 -1.8050 3.2129 8 6 5.4183 -1.3602 2.8159 9 7 5.8566 -1.9801 3.8898 10 14 6.6263 -0.5276 1.6597 11 1 6.8306 0.8799 2.0869 12 1 7.9237 -1.2492 1.6958 13 1 6.0848 -0.5516 0.2771 14 7 2.0197 -0.6925 -1.1993 15 6 1.3440 -2.0049 -1.3697 16 6 1.5523 -2.3222 -2.8735 17 6 1.4272 -0.9363 -3.5326 18 6 1.8788 -0.7013 -4.9680 19 6 0.3890 -0.6685 -4.6146 20 6 1.7124 0.0832 -2.4229 21 1 -0.3633 -1.0187 0.1355 22 1 -0.3632 0.3919 -0.9501 23 1 -0.3634 0.6267 0.8143 24 1 1.6053 -0.2616 2.1370 25 1 1.7516 -1.7715 1.2058 26 1 3.9995 -1.0727 0.4262 27 1 3.8531 0.4371 1.3575 28 1 6.8073 -2.0059 4.0809 29 1 1.8172 -2.7645 -0.7475 30 1 0.2821 -1.9233 -1.1377 31 1 0.7758 -2.9948 -3.2377 32 1 2.5414 -2.7454 -3.0485 33 1 2.3638 0.2482 -5.1943 34 1 2.2446 -1.5620 -5.5281 35 1 -0.2249 -1.5074 -4.9421 36 1 -0.1057 0.3028 -4.6084 37 1 0.8355 0.7091 -2.2570 38 1 2.5664 0.7032 -2.6956 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172495131.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:41 Heat of formation + Delta-G solvation = 1.837421 kcal Electronic energy + Delta-G solvation = -15765.215305 eV Core-core repulsion = 13414.181826 eV Total energy + Delta-G solvation = -2351.033479 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.81111 -37.82269 -35.37493 -33.73770 -31.64342 -29.94003 -27.52194 -26.76475 -23.79230 -23.28427 -22.48715 -20.48765 -19.90389 -18.78328 -17.11550 -16.52160 -16.32374 -15.75687 -15.42556 -14.90733 -14.73861 -14.45073 -14.08930 -13.94974 -13.36782 -13.14309 -12.94341 -12.87343 -12.48565 -12.24673 -12.18046 -12.01623 -11.83185 -11.65629 -11.46946 -11.35302 -11.16385 -11.04573 -10.72831 -10.53042 -9.11681 -8.27333 -6.29345 1.35034 1.37812 1.52949 2.38888 2.84542 3.08865 3.13825 3.50864 3.82850 3.96151 4.00287 4.07720 4.23239 4.37257 4.41426 4.57351 4.67899 4.71037 4.73623 4.80363 4.86059 4.89949 4.96748 5.03400 5.10034 5.11510 5.15640 5.22383 5.26261 5.29321 5.39459 5.56386 5.68820 5.75600 6.11169 6.27323 6.33476 6.78920 7.35235 8.89819 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.033706 B = 0.006981 C = 0.006358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.523794 B = 4010.075030 C = 4402.543981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.075 3.925 3 H 0.075 0.925 4 C -0.084 4.084 5 C 0.002 3.998 6 C -0.529 4.529 7 H 0.029 0.971 8 C 0.004 3.996 9 N -0.955 5.955 10 Si 0.950 3.050 11 H -0.267 1.267 12 H -0.284 1.284 13 H -0.250 1.250 14 N -0.527 5.527 15 C 0.030 3.970 16 C -0.083 4.083 17 C -0.152 4.152 18 C -0.164 4.164 19 C -0.154 4.154 20 C 0.071 3.929 21 H 0.060 0.940 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.051 0.949 25 H 0.044 0.956 26 H 0.024 0.976 27 H 0.006 0.994 28 H 0.265 0.735 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.058 0.942 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.107 4.186 -18.746 22.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.034 4.034 3 H 0.093 0.907 4 C -0.122 4.122 5 C -0.036 4.036 6 C -0.567 4.567 7 H 0.047 0.953 8 C -0.192 4.192 9 N -0.596 5.596 10 Si 0.773 3.227 11 H -0.192 1.192 12 H -0.210 1.210 13 H -0.173 1.173 14 N -0.251 5.251 15 C -0.097 4.097 16 C -0.121 4.121 17 C -0.153 4.153 18 C -0.201 4.201 19 C -0.191 4.191 20 C -0.057 4.057 21 H 0.079 0.921 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.042 0.958 27 H 0.025 0.975 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.076 0.924 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.393 4.091 -18.567 22.165 hybrid contribution 0.093 0.164 0.323 0.374 sum -11.300 4.254 -18.244 21.878 Atomic orbital electron populations 1.22370 0.95861 1.02458 1.02619 1.21832 0.93621 0.97706 0.90229 0.90714 1.21335 0.96073 0.99109 0.95653 1.19357 0.94418 0.95047 0.94737 1.21623 0.92607 1.33939 1.08548 0.95274 1.25980 1.00632 0.95819 0.96796 1.70079 1.15161 1.45802 1.28577 0.85656 0.77645 0.78726 0.80631 1.19240 1.20977 1.17347 1.64924 1.54782 1.03586 1.01769 1.23304 0.97877 0.91734 0.96814 1.21960 1.02021 0.94803 0.93290 1.21738 1.06703 0.96261 0.90591 1.22959 0.97693 1.03581 0.95867 1.23046 0.91811 1.03686 1.00510 1.22278 0.99837 0.95076 0.88505 0.92135 0.91376 0.91426 0.93049 0.93713 0.95791 0.97533 0.92639 0.92059 0.91847 0.89525 0.91686 0.88380 0.88145 0.87660 0.88049 0.92416 0.91367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.35 8.19 71.98 0.59 -3.76 16 2 C 0.07 2.40 2.28 44.92 0.10 2.50 16 3 H 0.07 2.40 8.10 -2.39 -0.02 2.39 16 4 C -0.08 -3.42 4.63 30.60 0.14 -3.28 16 5 C 0.00 0.09 3.93 29.85 0.12 0.21 16 6 C -0.53 -32.15 9.66 25.60 0.25 -31.90 16 7 H 0.03 1.93 7.99 -2.91 -0.02 1.90 16 8 C 0.00 0.23 5.47 84.65 0.46 0.69 16 9 N -0.95 -62.23 13.96 21.45 0.30 -61.93 16 10 Si 0.95 47.09 27.47 68.60 1.88 48.97 16 11 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 13 H -0.25 -11.88 6.54 99.48 0.65 -11.23 16 14 N -0.53 -16.65 4.70 -858.11 -4.03 -20.68 16 15 C 0.03 0.85 5.57 86.69 0.48 1.34 16 16 C -0.08 -1.93 6.83 31.64 0.22 -1.72 16 17 C -0.15 -3.24 2.45 -52.19 -0.13 -3.37 16 18 C -0.16 -2.87 10.29 30.41 0.31 -2.56 16 19 C -0.15 -2.42 10.27 30.42 0.31 -2.11 16 20 C 0.07 1.79 6.21 86.20 0.54 2.32 16 21 H 0.06 1.50 6.39 -2.39 -0.02 1.49 16 22 H 0.07 1.47 6.27 -2.39 -0.01 1.45 16 23 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.04 1.87 7.09 -2.38 -0.02 1.86 16 26 H 0.02 1.23 6.81 -2.39 -0.02 1.21 16 27 H 0.01 0.31 7.57 -2.38 -0.02 0.30 16 28 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 29 H 0.06 2.01 7.66 -2.39 -0.02 1.99 16 30 H 0.06 1.61 5.45 -2.39 -0.01 1.60 16 31 H 0.09 1.64 8.12 -2.39 -0.02 1.62 16 32 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 35 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.06 1.31 6.02 -2.38 -0.01 1.29 16 38 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -68.48 293.59 2.49 -65.98 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: 0.95 Total: 9.30 kcal Atomic # 6 Polarization: -45.03 SS G_CDS: 3.39 Total: -41.64 kcal Atomic # 7 Polarization: -78.88 SS G_CDS: -3.73 Total: -82.62 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 1.88 Total: 48.97 kcal Total: -68.48 2.49 -65.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172495131.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.821 kcal (2) G-P(sol) polarization free energy of solvation -68.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds