Wall clock time and date at job start Sun Mar 29 2020 21:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08993 * 109.47317 * 2 1 4 4 C 1.53005 * 109.47165 * 239.99626 * 2 1 3 5 5 C 1.53008 * 109.46856 * 65.46316 * 4 2 1 6 6 C 1.50705 * 109.46656 * 174.82294 * 5 4 2 7 7 H 1.07990 * 120.00455 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99208 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00294 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99645 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46836 * 59.99949 * 10 8 6 12 12 H 1.48498 * 109.47076 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.46868 * 300.00042 * 10 8 6 14 14 N 1.46903 * 109.47062 * 119.99941 * 2 1 3 15 15 C 1.47338 * 110.99914 * 304.42491 * 14 2 1 16 16 C 1.53940 * 108.25925 * 188.96399 * 15 14 2 17 17 C 1.54127 * 110.96276 * 72.24469 * 16 15 14 18 18 C 1.56051 * 84.63474 * 280.82501 * 17 16 15 19 19 C 1.54348 * 110.65057 * 338.24557 * 16 15 14 20 20 C 1.47348 * 110.99881 * 181.00765 * 14 2 1 21 21 H 1.09002 * 109.47250 * 300.00002 * 1 2 3 22 22 H 1.08997 * 109.47390 * 60.00281 * 1 2 3 23 23 H 1.09003 * 109.47308 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47105 * 185.46035 * 4 2 1 25 25 H 1.08998 * 109.47295 * 305.46525 * 4 2 1 26 26 H 1.08999 * 109.46686 * 294.82270 * 5 4 2 27 27 H 1.08996 * 109.47105 * 54.82379 * 5 4 2 28 28 H 0.97007 * 119.99764 * 180.02562 * 9 8 6 29 29 H 1.08997 * 109.70784 * 69.27269 * 15 14 2 30 30 H 1.09005 * 109.74193 * 308.67277 * 15 14 2 31 31 H 1.09005 * 114.45219 * 205.38978 * 16 15 14 32 32 H 1.09004 * 113.90154 * 34.71981 * 17 16 15 33 33 H 1.09006 * 113.90210 * 166.53806 * 17 16 15 34 34 H 1.08994 * 116.33181 * 211.90119 * 18 17 16 35 35 H 1.09003 * 113.92605 * 193.77149 * 19 16 15 36 36 H 1.09004 * 113.93026 * 325.68303 * 19 16 15 37 37 H 1.08999 * 109.70993 * 290.73003 * 20 14 2 38 38 H 1.09005 * 109.70430 * 51.35088 * 20 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.6451 0.0748 -2.4948 6 6 2.2549 -0.5662 -3.7148 7 1 2.8634 -1.4524 -3.6121 8 6 2.0366 -0.0205 -4.9620 9 7 1.2959 1.0590 -5.0870 10 14 2.7918 -0.8154 -6.4744 11 1 2.2957 -2.2093 -6.6008 12 1 2.4087 -0.0426 -7.6832 13 1 4.2707 -0.8264 -6.3414 14 7 2.0196 -0.6925 1.1995 15 6 1.4624 -0.0884 2.4224 16 6 2.1824 -0.7042 3.6357 17 6 3.6284 -0.1817 3.7424 18 6 3.9322 -1.2239 2.6213 19 6 2.8087 -2.0650 3.2640 20 6 3.4923 -0.6912 1.2457 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 3.1256 -0.8068 -1.2017 25 1 1.5989 -1.7169 -1.2995 26 1 0.5595 0.0821 -2.5922 27 1 2.0085 1.0982 -2.4021 28 1 1.1421 1.4427 -5.9646 29 1 0.3947 -0.2989 2.4828 30 1 1.6242 0.9895 2.4072 31 1 1.6045 -0.6868 4.5598 32 1 3.7478 0.8551 3.4278 33 1 4.1066 -0.3974 4.6980 34 1 4.9252 -1.6729 2.6348 35 1 3.1232 -2.6565 4.1239 36 1 2.2278 -2.6361 2.5397 37 1 3.8853 -1.3356 0.4593 38 1 3.8635 0.3246 1.1091 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172498895.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:37 Heat of formation + Delta-G solvation = 0.635022 kcal Electronic energy + Delta-G solvation = -15762.847806 eV Core-core repulsion = 13411.762188 eV Total energy + Delta-G solvation = -2351.085618 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.69363 -37.88071 -35.26217 -32.98592 -31.15024 -29.91781 -27.09673 -26.41883 -25.30923 -23.44771 -22.59901 -20.79502 -18.80949 -18.57460 -17.54863 -16.51100 -16.17360 -15.66492 -15.40706 -15.09376 -14.65746 -14.38859 -14.07730 -13.80306 -13.44340 -13.19940 -12.88630 -12.80188 -12.63190 -12.48094 -12.30616 -11.94035 -11.84211 -11.52120 -11.45449 -11.24124 -11.07851 -10.97546 -10.65174 -10.53129 -9.23136 -8.20092 -6.31117 1.39090 1.42382 1.50337 2.40583 2.90855 3.12791 3.61854 3.71239 3.75893 3.78406 4.05896 4.07915 4.35821 4.46001 4.54522 4.58887 4.61960 4.79351 4.80743 4.88941 4.93909 4.95003 4.96409 5.03528 5.07586 5.09465 5.21144 5.29220 5.34872 5.44610 5.48412 5.53887 5.76268 5.85341 6.16263 6.18178 6.30407 6.85354 7.37855 8.91541 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.049572 B = 0.005669 C = 0.005323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.697372 B = 4938.365044 C = 5258.536891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.087 3.913 3 H 0.019 0.981 4 C -0.085 4.085 5 C 0.030 3.970 6 C -0.545 4.545 7 H 0.057 0.943 8 C 0.001 3.999 9 N -0.933 5.933 10 Si 0.964 3.036 11 H -0.267 1.267 12 H -0.281 1.281 13 H -0.268 1.268 14 N -0.529 5.529 15 C 0.060 3.940 16 C -0.113 4.113 17 C -0.134 4.134 18 C -0.119 4.119 19 C -0.119 4.119 20 C 0.062 3.938 21 H 0.069 0.931 22 H 0.046 0.954 23 H 0.061 0.939 24 H 0.045 0.955 25 H 0.051 0.949 26 H 0.000 1.000 27 H -0.016 1.016 28 H 0.264 0.736 29 H 0.085 0.915 30 H 0.029 0.971 31 H 0.104 0.896 32 H 0.053 0.947 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.690 -3.794 18.052 18.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.021 4.021 3 H 0.037 0.963 4 C -0.123 4.123 5 C -0.008 4.008 6 C -0.583 4.583 7 H 0.075 0.925 8 C -0.197 4.197 9 N -0.573 5.573 10 Si 0.788 3.212 11 H -0.191 1.191 12 H -0.207 1.207 13 H -0.193 1.193 14 N -0.254 5.254 15 C -0.067 4.067 16 C -0.132 4.132 17 C -0.171 4.171 18 C -0.138 4.138 19 C -0.157 4.157 20 C -0.066 4.066 21 H 0.087 0.913 22 H 0.065 0.935 23 H 0.080 0.920 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.018 0.982 27 H 0.003 0.997 28 H 0.072 0.928 29 H 0.104 0.896 30 H 0.048 0.952 31 H 0.122 0.878 32 H 0.072 0.928 33 H 0.123 0.877 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 2.449 -4.158 17.899 18.538 hybrid contribution 0.501 0.934 -1.279 1.661 sum 2.950 -3.225 16.620 17.185 Atomic orbital electron populations 1.21797 0.93716 1.02305 1.01449 1.21602 0.96251 0.94214 0.89994 0.96267 1.21450 0.99266 0.98632 0.92973 1.18987 0.95327 0.93974 0.92482 1.21666 1.31442 1.12093 0.93065 0.92508 1.25963 0.95656 0.95481 1.02567 1.70091 1.39996 1.22559 1.24675 0.85518 0.79033 0.78674 0.77938 1.19150 1.20660 1.19256 1.62693 1.07388 1.53704 1.01655 1.22316 0.99865 0.95754 0.88768 1.22837 0.95693 0.97252 0.97392 1.23677 0.96552 0.97649 0.99210 1.23197 0.99613 0.98380 0.92602 1.22990 0.96931 0.95526 1.00246 1.22221 0.87744 0.98846 0.97818 0.91252 0.93460 0.91957 0.93590 0.93028 0.98201 0.99733 0.92760 0.89645 0.95243 0.87794 0.92816 0.87696 0.88511 0.88453 0.91723 0.91237 0.95700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.56 8.60 71.98 0.62 -3.94 16 2 C 0.09 3.21 2.09 44.91 0.09 3.30 16 3 H 0.02 0.76 8.13 -2.39 -0.02 0.74 16 4 C -0.09 -3.74 4.56 30.60 0.14 -3.60 16 5 C 0.03 1.63 4.61 29.85 0.14 1.76 16 6 C -0.54 -32.00 9.11 25.60 0.23 -31.77 16 7 H 0.06 3.22 7.74 -2.92 -0.02 3.20 16 8 C 0.00 0.06 5.46 84.65 0.46 0.52 16 9 N -0.93 -57.81 13.29 21.45 0.28 -57.52 16 10 Si 0.96 45.10 29.54 68.60 2.03 47.13 16 11 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 14 N -0.53 -16.25 3.78 -864.77 -3.27 -19.52 16 15 C 0.06 1.52 4.79 86.54 0.41 1.93 16 16 C -0.11 -2.25 5.04 -9.84 -0.05 -2.30 16 17 C -0.13 -2.53 7.45 32.03 0.24 -2.29 16 18 C -0.12 -2.65 5.15 -9.16 -0.05 -2.70 16 19 C -0.12 -2.45 7.31 31.51 0.23 -2.22 16 20 C 0.06 1.81 4.99 86.53 0.43 2.24 16 21 H 0.07 1.94 6.55 -2.39 -0.02 1.93 16 22 H 0.05 1.79 6.70 -2.39 -0.02 1.77 16 23 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.05 2.01 6.36 -2.39 -0.02 1.99 16 25 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.00 -0.02 6.84 -2.39 -0.02 -0.04 16 27 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 28 H 0.26 15.33 8.31 -92.70 -0.77 14.56 16 29 H 0.09 2.02 6.82 -2.39 -0.02 2.01 16 30 H 0.03 0.77 8.04 -2.38 -0.02 0.75 16 31 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.05 1.13 8.04 -2.38 -0.02 1.11 16 33 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.06 1.62 7.49 -2.38 -0.02 1.60 16 37 H 0.07 2.21 6.75 -2.39 -0.02 2.19 16 38 H 0.02 0.77 8.06 -2.38 -0.02 0.75 16 Total: -1.00 -64.15 289.90 2.95 -61.21 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: 1.00 Total: 7.78 kcal Atomic # 6 Polarization: -41.97 SS G_CDS: 2.90 Total: -39.07 kcal Atomic # 7 Polarization: -74.06 SS G_CDS: -2.99 Total: -77.04 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -64.15 2.95 -61.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172498895.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.840 kcal (2) G-P(sol) polarization free energy of solvation -64.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds