Wall clock time and date at job start Sun Mar 29 2020 21:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.47366 * 2 1 4 4 C 1.53002 * 109.47123 * 240.00044 * 2 1 3 5 5 C 1.52998 * 109.47104 * 173.64700 * 4 2 1 6 6 C 1.50698 * 109.46875 * 185.70709 * 5 4 2 7 7 H 1.08002 * 120.00284 * 0.02562 * 6 5 4 8 8 C 1.37883 * 119.99941 * 179.97438 * 6 5 4 9 9 N 1.31507 * 119.99896 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00020 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47171 * 179.97438 * 10 8 6 12 12 H 1.48502 * 109.46807 * 60.00499 * 10 8 6 13 13 H 1.48497 * 109.47340 * 300.00394 * 10 8 6 14 14 N 1.46904 * 109.47002 * 120.00225 * 2 1 3 15 15 C 1.48194 * 110.99756 * 195.70960 * 14 2 1 16 16 C 1.56036 * 105.21553 * 121.79988 * 15 14 2 17 17 H 1.09007 * 116.40956 * 159.19132 * 16 15 14 18 18 C 1.56066 * 104.78659 * 289.23921 * 16 15 14 19 19 C 1.55931 * 103.56889 * 66.63994 * 18 16 15 20 20 C 1.49550 * 110.99517 * 314.01065 * 14 2 1 21 21 H 1.09003 * 115.71681 * 78.32064 * 20 14 2 22 22 C 1.56900 * 101.13368 * 204.53975 * 20 14 2 23 23 H 1.08993 * 109.47327 * 186.11685 * 1 2 3 24 24 H 1.08998 * 109.46955 * 306.12440 * 1 2 3 25 25 H 1.09003 * 109.47023 * 66.11718 * 1 2 3 26 26 H 1.08996 * 109.47181 * 53.64112 * 4 2 1 27 27 H 1.09002 * 109.46736 * 293.64987 * 4 2 1 28 28 H 1.08999 * 109.47151 * 65.70934 * 5 4 2 29 29 H 1.08994 * 109.46971 * 305.70559 * 5 4 2 30 30 H 0.97003 * 120.00540 * 359.97438 * 9 8 6 31 31 H 1.09000 * 110.29761 * 240.73414 * 15 14 2 32 32 H 1.08999 * 110.30085 * 2.86358 * 15 14 2 33 33 H 1.09001 * 110.49201 * 186.32280 * 18 16 15 34 34 H 1.09007 * 110.49106 * 308.84392 * 18 16 15 35 35 H 1.09001 * 110.97150 * 242.80715 * 19 18 16 36 36 H 1.08993 * 109.79076 * 120.37717 * 19 18 16 37 37 H 1.09005 * 112.18966 * 169.63396 * 22 20 14 38 38 H 1.09002 * 112.19026 * 296.59245 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 3.5617 -0.5845 -1.3316 6 6 4.0492 -1.1721 -2.6308 7 1 3.3442 -1.6000 -3.3283 8 6 5.3952 -1.1627 -2.9297 9 7 6.2536 -0.6413 -2.0807 10 14 5.9996 -1.8918 -4.5398 11 1 7.4764 -1.7578 -4.6204 12 1 5.3748 -1.1682 -5.6762 13 1 5.6281 -3.3281 -4.6032 14 7 2.0197 -0.6926 1.1995 15 6 3.4524 -0.3965 1.4359 16 6 3.5105 0.2328 2.8625 17 1 4.4762 0.2017 3.3672 18 6 2.8575 1.6414 2.7034 19 6 1.3682 1.3190 2.3728 20 6 1.2837 -0.2372 2.4191 21 1 0.2903 -0.6636 2.5587 22 6 2.3326 -0.5544 3.5420 23 1 -0.3633 -1.0217 0.1095 24 1 -0.3633 0.6058 0.8301 25 1 -0.3633 0.4161 -0.9397 26 1 1.5868 -0.2774 -2.1356 27 1 1.7725 -1.7765 -1.1942 28 1 4.0199 -1.1162 -0.4977 29 1 3.8348 0.4696 -1.2845 30 1 5.9398 -0.2630 -1.2444 31 1 4.0386 -1.3149 1.4037 32 1 3.8193 0.3132 0.6944 33 1 2.9498 2.2114 3.6279 34 1 3.3151 2.1827 1.8752 35 1 1.1004 1.6852 1.3817 36 1 0.7187 1.7580 3.1300 37 1 2.0500 -0.1240 4.5028 38 1 2.5418 -1.6213 3.6204 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172500012.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:52 Heat of formation + Delta-G solvation = 7.296061 kcal Electronic energy + Delta-G solvation = -16365.833785 eV Core-core repulsion = 14015.037011 eV Total energy + Delta-G solvation = -2350.796774 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.65461 -35.45896 -33.12147 -30.61001 -30.12457 -28.03071 -27.62901 -24.61130 -23.19795 -21.39171 -20.45919 -19.69075 -18.45178 -16.67572 -16.38950 -15.56747 -14.60131 -14.16649 -13.66057 -13.18274 -12.80210 -12.66889 -12.31484 -12.03698 -11.94065 -11.58579 -11.36199 -11.19441 -10.98394 -10.87584 -10.79234 -10.62646 -10.49507 -10.31134 -10.19174 -10.01378 -9.64286 -9.35144 -8.35546 -8.22572 -7.75849 -6.27760 -3.94892 3.47884 3.50194 3.68633 4.23315 4.60926 4.61037 4.66754 4.90939 5.26265 5.32461 5.43318 5.47154 5.48822 5.51860 5.60760 5.76047 5.82285 5.91126 5.94979 6.00567 6.08659 6.13623 6.19277 6.29473 6.34684 6.43585 6.47291 6.56060 6.63473 6.87539 7.09128 7.36829 7.49932 7.53641 7.78787 8.34473 8.56103 8.98689 9.76155 11.12831 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.039182 B = 0.007512 C = 0.006761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.446751 B = 3726.295929 C = 4140.397705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.071 3.929 3 H 0.040 0.960 4 C -0.094 4.094 5 C 0.002 3.998 6 C -0.599 4.599 7 H 0.045 0.955 8 C 0.013 3.987 9 N -0.915 5.915 10 Si 1.067 2.933 11 H -0.283 1.283 12 H -0.289 1.289 13 H -0.288 1.288 14 N -0.508 5.508 15 C 0.045 3.955 16 C -0.128 4.128 17 H 0.100 0.900 18 C -0.122 4.122 19 C -0.164 4.164 20 C 0.059 3.941 21 H 0.109 0.891 22 C -0.125 4.125 23 H 0.060 0.940 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.025 0.975 29 H -0.002 1.002 30 H 0.267 0.733 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.427 2.995 10.346 14.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.037 4.037 3 H 0.058 0.942 4 C -0.132 4.132 5 C -0.034 4.034 6 C -0.637 4.637 7 H 0.064 0.936 8 C -0.190 4.190 9 N -0.552 5.552 10 Si 0.895 3.105 11 H -0.208 1.208 12 H -0.216 1.216 13 H -0.215 1.215 14 N -0.232 5.232 15 C -0.083 4.083 16 C -0.147 4.147 17 H 0.118 0.882 18 C -0.159 4.159 19 C -0.202 4.202 20 C -0.050 4.050 21 H 0.127 0.873 22 C -0.162 4.162 23 H 0.079 0.921 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.043 0.957 29 H 0.016 0.984 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.151 2.158 9.309 12.560 hybrid contribution -1.300 1.259 0.934 2.037 sum -9.451 3.416 10.243 14.350 Atomic orbital electron populations 1.22020 0.95646 1.01976 1.01103 1.21983 0.94056 0.95885 0.91822 0.94228 1.21527 0.99007 0.99389 0.93324 1.19516 0.90810 0.95404 0.97684 1.22133 0.94833 1.42237 1.04512 0.93646 1.25802 0.93447 0.96000 1.03767 1.70782 1.37041 1.37081 1.10323 0.83577 0.76100 0.76041 0.74735 1.20845 1.21605 1.21507 1.64749 1.02603 1.54578 1.01303 1.23579 0.89769 1.00457 0.94456 1.24054 0.98079 0.95052 0.97505 0.88159 1.22864 0.95349 0.96767 1.00961 1.23612 0.96722 0.97814 1.02082 1.24229 0.97538 0.92274 0.90912 0.87338 1.23637 0.95337 1.00392 0.96860 0.92115 0.93051 0.92580 0.93197 0.92561 0.95694 0.98415 0.92247 0.90453 0.90855 0.91939 0.91914 0.90424 0.92231 0.91301 0.90603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 8.22 37.16 0.31 -1.88 16 2 C 0.07 1.26 1.53 -67.71 -0.10 1.16 16 3 H 0.04 0.74 6.19 -51.93 -0.32 0.42 16 4 C -0.09 -2.06 4.82 -26.73 -0.13 -2.19 16 5 C 0.00 0.06 2.77 -27.89 -0.08 -0.01 16 6 C -0.60 -17.62 9.11 -34.44 -0.31 -17.94 16 7 H 0.05 1.32 7.74 -52.49 -0.41 0.92 16 8 C 0.01 0.38 5.46 -17.82 -0.10 0.29 16 9 N -0.92 -28.50 13.65 55.43 0.76 -27.74 16 10 Si 1.07 26.02 29.90 -169.99 -5.08 20.94 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 14 N -0.51 -8.74 5.09 -209.25 -1.06 -9.80 16 15 C 0.04 0.81 4.07 -1.48 -0.01 0.80 16 16 C -0.13 -1.83 5.28 -85.11 -0.45 -2.28 16 17 H 0.10 1.33 8.14 -51.92 -0.42 0.90 16 18 C -0.12 -1.64 6.34 -23.52 -0.15 -1.79 16 19 C -0.16 -2.13 5.23 -23.61 -0.12 -2.26 16 20 C 0.06 0.81 3.94 -62.56 -0.25 0.56 16 21 H 0.11 1.37 7.82 -51.93 -0.41 0.96 16 22 C -0.12 -1.61 6.59 -22.38 -0.15 -1.75 16 23 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.05 0.65 5.75 -51.93 -0.30 0.36 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.05 1.08 8.13 -51.93 -0.42 0.66 16 27 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.02 0.67 5.12 -51.93 -0.27 0.40 16 29 H 0.00 -0.06 7.45 -51.93 -0.39 -0.45 16 30 H 0.27 8.24 7.22 -40.82 -0.29 7.95 16 31 H 0.08 1.53 7.52 -51.93 -0.39 1.14 16 32 H 0.07 1.51 5.02 -51.93 -0.26 1.24 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.92 7.91 -51.93 -0.41 0.51 16 35 H 0.08 1.09 4.62 -51.93 -0.24 0.85 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 278.96 15.07 4.20 4.20 Total: -1.00 -30.81 278.96 -9.01 -39.82 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -6.28 Total: -0.13 kcal Atomic # 6 Polarization: -25.75 SS G_CDS: -1.54 Total: -27.29 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: -0.31 Total: -37.54 kcal Atomic # 14 Polarization: 26.02 SS G_CDS: -5.08 Total: 20.94 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.81 -9.01 -39.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172500012.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.114 kcal (2) G-P(sol) polarization free energy of solvation -30.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds