Wall clock time and date at job start Sun Mar 29 2020 21:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.47366 * 2 1 4 4 C 1.53002 * 109.47123 * 240.00044 * 2 1 3 5 5 C 1.52998 * 109.47104 * 173.64700 * 4 2 1 6 6 C 1.50698 * 109.46875 * 185.70709 * 5 4 2 7 7 H 1.08002 * 120.00284 * 0.02562 * 6 5 4 8 8 C 1.37883 * 119.99941 * 179.97438 * 6 5 4 9 9 N 1.31507 * 119.99896 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00020 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47171 * 179.97438 * 10 8 6 12 12 H 1.48502 * 109.46807 * 60.00499 * 10 8 6 13 13 H 1.48497 * 109.47340 * 300.00394 * 10 8 6 14 14 N 1.46904 * 109.47002 * 120.00225 * 2 1 3 15 15 C 1.48194 * 110.99756 * 195.70960 * 14 2 1 16 16 C 1.56036 * 105.21553 * 121.79988 * 15 14 2 17 17 H 1.09007 * 116.40956 * 159.19132 * 16 15 14 18 18 C 1.56066 * 104.78659 * 289.23921 * 16 15 14 19 19 C 1.55931 * 103.56889 * 66.63994 * 18 16 15 20 20 C 1.49550 * 110.99517 * 314.01065 * 14 2 1 21 21 H 1.09003 * 115.71681 * 78.32064 * 20 14 2 22 22 C 1.56900 * 101.13368 * 204.53975 * 20 14 2 23 23 H 1.08993 * 109.47327 * 186.11685 * 1 2 3 24 24 H 1.08998 * 109.46955 * 306.12440 * 1 2 3 25 25 H 1.09003 * 109.47023 * 66.11718 * 1 2 3 26 26 H 1.08996 * 109.47181 * 53.64112 * 4 2 1 27 27 H 1.09002 * 109.46736 * 293.64987 * 4 2 1 28 28 H 1.08999 * 109.47151 * 65.70934 * 5 4 2 29 29 H 1.08994 * 109.46971 * 305.70559 * 5 4 2 30 30 H 0.97003 * 120.00540 * 359.97438 * 9 8 6 31 31 H 1.09000 * 110.29761 * 240.73414 * 15 14 2 32 32 H 1.08999 * 110.30085 * 2.86358 * 15 14 2 33 33 H 1.09001 * 110.49201 * 186.32280 * 18 16 15 34 34 H 1.09007 * 110.49106 * 308.84392 * 18 16 15 35 35 H 1.09001 * 110.97150 * 242.80715 * 19 18 16 36 36 H 1.08993 * 109.79076 * 120.37717 * 19 18 16 37 37 H 1.09005 * 112.18966 * 169.63396 * 22 20 14 38 38 H 1.09002 * 112.19026 * 296.59245 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 3.5617 -0.5845 -1.3316 6 6 4.0492 -1.1721 -2.6308 7 1 3.3442 -1.6000 -3.3283 8 6 5.3952 -1.1627 -2.9297 9 7 6.2536 -0.6413 -2.0807 10 14 5.9996 -1.8918 -4.5398 11 1 7.4764 -1.7578 -4.6204 12 1 5.3748 -1.1682 -5.6762 13 1 5.6281 -3.3281 -4.6032 14 7 2.0197 -0.6926 1.1995 15 6 3.4524 -0.3965 1.4359 16 6 3.5105 0.2328 2.8625 17 1 4.4762 0.2017 3.3672 18 6 2.8575 1.6414 2.7034 19 6 1.3682 1.3190 2.3728 20 6 1.2837 -0.2372 2.4191 21 1 0.2903 -0.6636 2.5587 22 6 2.3326 -0.5544 3.5420 23 1 -0.3633 -1.0217 0.1095 24 1 -0.3633 0.6058 0.8301 25 1 -0.3633 0.4161 -0.9397 26 1 1.5868 -0.2774 -2.1356 27 1 1.7725 -1.7765 -1.1942 28 1 4.0199 -1.1162 -0.4977 29 1 3.8348 0.4696 -1.2845 30 1 5.9398 -0.2630 -1.2444 31 1 4.0386 -1.3149 1.4037 32 1 3.8193 0.3132 0.6944 33 1 2.9498 2.2114 3.6279 34 1 3.3151 2.1827 1.8752 35 1 1.1004 1.6852 1.3817 36 1 0.7187 1.7580 3.1300 37 1 2.0500 -0.1240 4.5028 38 1 2.5418 -1.6213 3.6204 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172500012.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:51 Heat of formation + Delta-G solvation = -11.992910 kcal Electronic energy + Delta-G solvation = -16366.670217 eV Core-core repulsion = 14015.037011 eV Total energy + Delta-G solvation = -2351.633207 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.89794 -37.09728 -35.14003 -32.02952 -31.72398 -29.42553 -28.75886 -26.57049 -24.75215 -23.06796 -21.91960 -20.94459 -19.75977 -18.74326 -17.81738 -16.75376 -15.99052 -15.67819 -15.48971 -14.98062 -14.54177 -14.16278 -13.85214 -13.52363 -13.36409 -12.85473 -12.73579 -12.63903 -12.42757 -12.26970 -12.04921 -12.00346 -11.94052 -11.91931 -11.77413 -11.59432 -11.26772 -11.11815 -10.54000 -10.47334 -9.12074 -8.68654 -6.37760 1.49120 1.58329 1.77773 2.55525 2.95063 3.15586 3.49665 3.53406 3.72215 4.03463 4.13032 4.14496 4.28387 4.37006 4.41460 4.47097 4.52176 4.67975 4.78407 4.84704 4.87460 4.88491 4.95891 4.98025 5.03055 5.09784 5.12618 5.18125 5.23900 5.27391 5.39026 5.47585 5.56216 6.02539 6.03479 6.19591 6.26314 6.60290 7.43442 8.71612 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.039182 B = 0.007512 C = 0.006761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.446751 B = 3726.295929 C = 4140.397705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.079 3.921 3 H 0.027 0.973 4 C -0.087 4.087 5 C 0.012 3.988 6 C -0.623 4.623 7 H 0.044 0.956 8 C -0.040 4.040 9 N -0.936 5.936 10 Si 1.117 2.883 11 H -0.281 1.281 12 H -0.269 1.269 13 H -0.270 1.270 14 N -0.522 5.522 15 C 0.046 3.954 16 C -0.127 4.127 17 H 0.108 0.892 18 C -0.120 4.120 19 C -0.159 4.159 20 C 0.058 3.942 21 H 0.131 0.869 22 C -0.113 4.113 23 H 0.064 0.936 24 H 0.076 0.924 25 H 0.061 0.939 26 H 0.048 0.952 27 H 0.047 0.953 28 H 0.011 0.989 29 H -0.027 1.027 30 H 0.254 0.746 31 H 0.045 0.955 32 H 0.036 0.964 33 H 0.089 0.911 34 H 0.038 0.962 35 H 0.065 0.935 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.208 3.040 11.321 16.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.029 4.029 3 H 0.045 0.955 4 C -0.125 4.125 5 C -0.025 4.025 6 C -0.661 4.661 7 H 0.063 0.937 8 C -0.237 4.237 9 N -0.574 5.574 10 Si 0.938 3.062 11 H -0.206 1.206 12 H -0.195 1.195 13 H -0.195 1.195 14 N -0.247 5.247 15 C -0.083 4.083 16 C -0.146 4.146 17 H 0.126 0.874 18 C -0.158 4.158 19 C -0.197 4.197 20 C -0.049 4.049 21 H 0.149 0.851 22 C -0.150 4.150 23 H 0.083 0.917 24 H 0.095 0.905 25 H 0.080 0.920 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.029 0.971 29 H -0.009 1.009 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.107 0.893 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.108 0.892 37 H 0.119 0.881 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.962 2.209 10.306 14.503 hybrid contribution -0.721 1.242 0.652 1.577 sum -10.684 3.451 10.958 15.688 Atomic orbital electron populations 1.21945 0.92395 1.02823 1.02605 1.21795 0.96416 0.94359 0.90349 0.95501 1.21409 0.95851 0.99430 0.95828 1.19377 0.93921 0.93213 0.95946 1.22616 0.95364 1.42364 1.05743 0.93743 1.27444 0.94061 0.95575 1.06652 1.70912 1.37470 1.38518 1.10464 0.82952 0.75783 0.76458 0.71042 1.20642 1.19467 1.19496 1.64653 1.02257 1.55088 1.02705 1.23336 0.90299 0.98225 0.96395 1.24077 0.99574 0.95913 0.95025 0.87353 1.22867 0.95602 0.95984 1.01313 1.23571 0.96650 0.97133 1.02396 1.24468 0.98318 0.92981 0.89174 0.85092 1.23622 0.93699 0.99962 0.97759 0.91741 0.90472 0.91985 0.93363 0.93400 0.97069 1.00898 0.93688 0.93624 0.94541 0.89269 0.94345 0.91688 0.89164 0.88094 0.91238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 8.22 71.98 0.59 -3.20 16 2 C 0.08 2.84 1.53 44.92 0.07 2.91 16 3 H 0.03 1.04 6.19 -2.39 -0.01 1.02 16 4 C -0.09 -3.91 4.82 30.59 0.15 -3.77 16 5 C 0.01 0.67 2.77 29.85 0.08 0.75 16 6 C -0.62 -37.81 9.11 25.60 0.23 -37.58 16 7 H 0.04 2.64 7.74 -2.91 -0.02 2.62 16 8 C -0.04 -2.45 5.46 84.66 0.46 -1.98 16 9 N -0.94 -60.29 13.65 21.45 0.29 -59.99 16 10 Si 1.12 52.46 29.90 68.60 2.05 54.51 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 12 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 13 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 14 N -0.52 -17.93 5.09 -815.93 -4.15 -22.08 16 15 C 0.05 1.73 4.07 87.11 0.35 2.09 16 16 C -0.13 -3.56 5.28 -7.23 -0.04 -3.59 16 17 H 0.11 2.82 8.14 -2.38 -0.02 2.80 16 18 C -0.12 -3.05 6.34 32.67 0.21 -2.85 16 19 C -0.16 -3.69 5.23 32.62 0.17 -3.52 16 20 C 0.06 1.43 3.94 46.78 0.18 1.62 16 21 H 0.13 2.73 7.82 -2.39 -0.02 2.71 16 22 C -0.11 -2.61 6.59 33.41 0.22 -2.39 16 23 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.08 1.70 5.75 -2.39 -0.01 1.69 16 25 H 0.06 1.60 8.14 -2.39 -0.02 1.59 16 26 H 0.05 2.13 8.13 -2.39 -0.02 2.11 16 27 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.01 0.64 5.12 -2.39 -0.01 0.63 16 29 H -0.03 -1.61 7.45 -2.39 -0.02 -1.63 16 30 H 0.25 16.58 7.22 -92.71 -0.67 15.91 16 31 H 0.05 1.96 7.52 -2.39 -0.02 1.94 16 32 H 0.04 1.63 5.02 -2.39 -0.01 1.62 16 33 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.04 1.15 7.91 -2.38 -0.02 1.13 16 35 H 0.06 1.70 4.62 -2.39 -0.01 1.69 16 36 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 38 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -69.04 278.96 2.00 -67.05 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 1.12 Total: 12.04 kcal Atomic # 6 Polarization: -54.20 SS G_CDS: 2.69 Total: -51.52 kcal Atomic # 7 Polarization: -78.22 SS G_CDS: -3.86 Total: -82.08 kcal Atomic # 14 Polarization: 52.46 SS G_CDS: 2.05 Total: 54.51 kcal Total: -69.04 2.00 -67.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172500012.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.052 kcal (2) G-P(sol) polarization free energy of solvation -69.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds