Wall clock time and date at job start Sun Mar 29 2020 21:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47279 * 2 1 4 4 C 1.53006 * 109.47094 * 119.99636 * 2 1 3 5 5 C 1.52996 * 109.47039 * 185.00225 * 4 2 1 6 6 C 1.50702 * 109.47051 * 180.02562 * 5 4 2 7 7 H 1.08001 * 120.00201 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00401 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99631 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00317 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47282 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47384 * 119.99927 * 10 8 6 13 13 H 1.48507 * 109.47000 * 240.00171 * 10 8 6 14 14 N 1.46901 * 109.47455 * 239.99484 * 2 1 3 15 15 C 1.48200 * 111.00151 * 335.28490 * 14 2 1 16 16 C 1.56037 * 105.21730 * 121.79615 * 15 14 2 17 17 H 1.08999 * 116.40621 * 159.18922 * 16 15 14 18 18 C 1.56070 * 104.78748 * 289.24448 * 16 15 14 19 19 C 1.57824 * 103.73221 * 66.38883 * 18 16 15 20 20 C 1.49560 * 110.99786 * 93.59079 * 14 2 1 21 21 H 1.09000 * 115.71847 * 78.31723 * 20 14 2 22 22 C 1.56900 * 101.13452 * 204.54401 * 20 14 2 23 23 H 1.08992 * 109.47487 * 311.86385 * 1 2 3 24 24 H 1.09003 * 109.46801 * 71.86921 * 1 2 3 25 25 H 1.09003 * 109.47374 * 191.86507 * 1 2 3 26 26 H 1.08997 * 109.46812 * 305.00076 * 4 2 1 27 27 H 1.09001 * 109.47001 * 65.00269 * 4 2 1 28 28 H 1.08997 * 109.47196 * 299.99615 * 5 4 2 29 29 H 1.08996 * 109.47536 * 59.99893 * 5 4 2 30 30 H 0.97000 * 119.99947 * 179.97438 * 9 8 6 31 31 H 1.08997 * 110.29478 * 240.73522 * 15 14 2 32 32 H 1.09005 * 110.28883 * 2.86605 * 15 14 2 33 33 H 1.09001 * 110.48787 * 186.31745 * 18 16 15 34 34 H 1.08997 * 110.49151 * 308.84362 * 18 16 15 35 35 H 1.08993 * 111.82834 * 243.25526 * 19 18 16 36 36 H 1.09000 * 109.78438 * 120.25466 * 19 18 16 37 37 H 1.09000 * 112.19236 * 169.63033 * 22 20 14 38 38 H 1.09008 * 112.18663 * 296.58676 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.0671 -1.3241 2.5440 7 1 3.3687 -1.8045 3.2132 8 6 5.4184 -1.3612 2.8153 9 7 6.2690 -0.7766 2.0002 10 14 6.0411 -2.2417 4.3405 11 1 4.8910 -2.8121 5.0870 12 1 6.9626 -3.3349 3.9395 13 1 6.7645 -1.2776 5.2080 14 7 2.0197 -0.6926 -1.1994 15 6 1.0119 -1.6535 -1.7066 16 6 0.7193 -1.2047 -3.1721 17 1 0.2861 -1.9564 -3.8319 18 6 -0.0746 0.1312 -3.0287 19 6 0.9779 1.1273 -2.4034 20 6 2.2808 0.2761 -2.3085 21 1 3.2106 0.8402 -2.2348 22 6 2.1382 -0.6547 -3.5635 23 1 -0.3634 0.6858 0.7653 24 1 -0.3633 0.3198 -0.9767 25 1 -0.3634 -1.0057 0.2113 26 1 1.6053 -0.2616 2.1370 27 1 1.7516 -1.7715 1.2057 28 1 3.9994 -1.0728 0.4262 29 1 3.8531 0.4370 1.3574 30 1 7.2197 -0.8024 2.1912 31 1 1.4153 -2.6660 -1.6946 32 1 0.1034 -1.6004 -1.1065 33 1 -0.4257 0.4728 -4.0024 34 1 -0.9136 0.0049 -2.3443 35 1 0.6740 1.4696 -1.4143 36 1 1.1255 1.9755 -3.0719 37 1 2.1179 -0.0893 -4.4952 38 1 2.8937 -1.4403 -3.5813 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172500025.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:54 Heat of formation + Delta-G solvation = 32.994734 kcal Electronic energy + Delta-G solvation = -16186.981329 eV Core-core repulsion = 13837.298933 eV Total energy + Delta-G solvation = -2349.682396 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.89858 -35.15995 -32.74995 -30.52853 -29.78156 -29.51901 -26.79141 -25.13026 -23.09746 -21.25253 -20.31372 -19.92206 -18.01939 -16.29327 -16.05454 -15.93147 -15.36385 -14.34203 -13.32868 -13.06118 -12.91312 -12.67360 -12.07024 -11.99089 -11.82342 -11.42810 -11.29436 -11.22659 -10.98673 -10.90225 -10.85294 -10.54204 -10.39820 -10.32841 -10.14679 -9.87967 -9.54215 -9.09153 -8.82315 -8.18672 -7.62042 -5.84576 -3.85215 3.38832 3.45863 3.50304 4.27539 4.55178 4.57771 4.64297 4.90231 5.18279 5.31397 5.33697 5.45905 5.49966 5.51132 5.51539 5.70794 5.80423 5.86309 5.93586 5.96807 6.09488 6.16061 6.16935 6.24779 6.35782 6.39020 6.44222 6.57774 6.78518 6.93048 7.39097 7.44794 7.68452 7.89609 8.13708 8.28641 8.62924 9.24066 9.77126 11.26679 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.047350 B = 0.006490 C = 0.006213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.204992 B = 4313.469509 C = 4505.407710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.075 3.925 3 H 0.069 0.931 4 C -0.095 4.095 5 C 0.029 3.971 6 C -0.515 4.515 7 H 0.051 0.949 8 C 0.055 3.945 9 N -0.896 5.896 10 Si 0.886 3.114 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.286 1.286 14 N -0.498 5.498 15 C 0.024 3.976 16 C -0.125 4.125 17 H 0.098 0.902 18 C -0.126 4.126 19 C -0.171 4.171 20 C 0.061 3.939 21 H 0.112 0.888 22 C -0.123 4.123 23 H 0.052 0.948 24 H 0.079 0.921 25 H 0.059 0.941 26 H 0.043 0.957 27 H 0.046 0.954 28 H 0.032 0.968 29 H 0.006 0.994 30 H 0.257 0.743 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.059 0.941 37 H 0.069 0.931 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.371 2.087 -10.866 16.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.034 4.034 3 H 0.087 0.913 4 C -0.133 4.133 5 C -0.008 4.008 6 C -0.554 4.554 7 H 0.069 0.931 8 C -0.145 4.145 9 N -0.536 5.536 10 Si 0.715 3.285 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.212 1.212 14 N -0.222 5.222 15 C -0.103 4.103 16 C -0.144 4.144 17 H 0.116 0.884 18 C -0.164 4.164 19 C -0.210 4.210 20 C -0.047 4.047 21 H 0.130 0.870 22 C -0.161 4.161 23 H 0.071 0.929 24 H 0.097 0.903 25 H 0.078 0.922 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.050 0.950 29 H 0.024 0.976 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.709 1.852 -10.699 15.969 hybrid contribution -0.278 -0.003 0.706 0.759 sum -11.987 1.849 -9.993 15.715 Atomic orbital electron populations 1.23177 0.98650 1.01654 1.02852 1.21957 0.91425 0.97903 0.92106 0.91310 1.21614 1.00474 0.98324 0.92886 1.18994 0.88432 0.96343 0.97017 1.21396 0.91833 1.33767 1.08402 0.93105 1.25000 0.97144 0.95839 0.96515 1.69991 1.02062 1.44602 1.36912 0.86628 0.78803 0.79533 0.83561 1.19902 1.21137 1.21198 1.64754 1.39843 1.14335 1.03231 1.23653 0.95854 0.97357 0.93482 1.23956 0.96150 0.96691 0.97586 0.88358 1.23328 0.97641 0.95335 1.00051 1.24146 0.96863 0.98229 1.01758 1.24312 0.96657 0.92852 0.90878 0.86988 1.23642 0.96614 0.99001 0.96862 0.92890 0.90277 0.92199 0.93809 0.93563 0.94982 0.97592 0.93350 0.91127 0.90668 0.91921 0.91376 0.89552 0.92198 0.91284 0.90353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.92 6.92 37.16 0.26 -2.66 16 2 C 0.07 1.32 1.86 -67.71 -0.13 1.19 16 3 H 0.07 1.26 7.02 -51.93 -0.36 0.89 16 4 C -0.09 -2.06 4.80 -26.73 -0.13 -2.19 16 5 C 0.03 0.79 4.86 -27.88 -0.14 0.66 16 6 C -0.52 -15.28 9.11 -34.44 -0.31 -15.59 16 7 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 9 N -0.90 -27.93 13.29 55.43 0.74 -27.19 16 10 Si 0.89 22.43 29.54 -169.99 -5.02 17.41 16 11 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 14 N -0.50 -8.60 4.58 -209.24 -0.96 -9.56 16 15 C 0.02 0.35 5.99 -1.48 -0.01 0.34 16 16 C -0.12 -1.48 5.28 -85.11 -0.45 -1.93 16 17 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 18 C -0.13 -1.40 5.96 -22.45 -0.13 -1.53 16 19 C -0.17 -2.14 5.72 -22.53 -0.13 -2.27 16 20 C 0.06 0.91 4.94 -62.56 -0.31 0.60 16 21 H 0.11 1.75 8.14 -51.93 -0.42 1.33 16 22 C -0.12 -1.58 6.60 -22.38 -0.15 -1.73 16 23 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.08 0.99 2.30 -51.93 -0.12 0.87 16 25 H 0.06 0.84 6.49 -51.93 -0.34 0.51 16 26 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.03 0.93 7.75 -51.93 -0.40 0.53 16 29 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.08 1.05 4.11 -51.93 -0.21 0.84 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.74 5.95 -51.93 -0.31 0.43 16 35 H 0.09 1.14 4.32 -51.93 -0.22 0.91 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.08 1.08 8.14 -51.92 -0.42 0.66 16 LS Contribution 279.78 15.07 4.22 4.22 Total: -1.00 -31.21 279.78 -8.91 -40.12 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -6.16 Total: -1.44 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: -1.72 Total: -23.56 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: -0.22 Total: -36.75 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.21 -8.91 -40.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172500025.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.114 kcal (2) G-P(sol) polarization free energy of solvation -31.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds