Wall clock time and date at job start Sun Mar 29 2020 21:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47279 * 2 1 4 4 C 1.53006 * 109.47094 * 119.99636 * 2 1 3 5 5 C 1.52996 * 109.47039 * 185.00225 * 4 2 1 6 6 C 1.50702 * 109.47051 * 180.02562 * 5 4 2 7 7 H 1.08001 * 120.00201 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00401 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99631 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00317 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47282 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47384 * 119.99927 * 10 8 6 13 13 H 1.48507 * 109.47000 * 240.00171 * 10 8 6 14 14 N 1.46901 * 109.47455 * 239.99484 * 2 1 3 15 15 C 1.48200 * 111.00151 * 335.28490 * 14 2 1 16 16 C 1.56037 * 105.21730 * 121.79615 * 15 14 2 17 17 H 1.08999 * 116.40621 * 159.18922 * 16 15 14 18 18 C 1.56070 * 104.78748 * 289.24448 * 16 15 14 19 19 C 1.57824 * 103.73221 * 66.38883 * 18 16 15 20 20 C 1.49560 * 110.99786 * 93.59079 * 14 2 1 21 21 H 1.09000 * 115.71847 * 78.31723 * 20 14 2 22 22 C 1.56900 * 101.13452 * 204.54401 * 20 14 2 23 23 H 1.08992 * 109.47487 * 311.86385 * 1 2 3 24 24 H 1.09003 * 109.46801 * 71.86921 * 1 2 3 25 25 H 1.09003 * 109.47374 * 191.86507 * 1 2 3 26 26 H 1.08997 * 109.46812 * 305.00076 * 4 2 1 27 27 H 1.09001 * 109.47001 * 65.00269 * 4 2 1 28 28 H 1.08997 * 109.47196 * 299.99615 * 5 4 2 29 29 H 1.08996 * 109.47536 * 59.99893 * 5 4 2 30 30 H 0.97000 * 119.99947 * 179.97438 * 9 8 6 31 31 H 1.08997 * 110.29478 * 240.73522 * 15 14 2 32 32 H 1.09005 * 110.28883 * 2.86605 * 15 14 2 33 33 H 1.09001 * 110.48787 * 186.31745 * 18 16 15 34 34 H 1.08997 * 110.49151 * 308.84362 * 18 16 15 35 35 H 1.08993 * 111.82834 * 243.25526 * 19 18 16 36 36 H 1.09000 * 109.78438 * 120.25466 * 19 18 16 37 37 H 1.09000 * 112.19236 * 169.63033 * 22 20 14 38 38 H 1.09008 * 112.18663 * 296.58676 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.0671 -1.3241 2.5440 7 1 3.3687 -1.8045 3.2132 8 6 5.4184 -1.3612 2.8153 9 7 6.2690 -0.7766 2.0002 10 14 6.0411 -2.2417 4.3405 11 1 4.8910 -2.8121 5.0870 12 1 6.9626 -3.3349 3.9395 13 1 6.7645 -1.2776 5.2080 14 7 2.0197 -0.6926 -1.1994 15 6 1.0119 -1.6535 -1.7066 16 6 0.7193 -1.2047 -3.1721 17 1 0.2861 -1.9564 -3.8319 18 6 -0.0746 0.1312 -3.0287 19 6 0.9779 1.1273 -2.4034 20 6 2.2808 0.2761 -2.3085 21 1 3.2106 0.8402 -2.2348 22 6 2.1382 -0.6547 -3.5635 23 1 -0.3634 0.6858 0.7653 24 1 -0.3633 0.3198 -0.9767 25 1 -0.3634 -1.0057 0.2113 26 1 1.6053 -0.2616 2.1370 27 1 1.7516 -1.7715 1.2057 28 1 3.9994 -1.0728 0.4262 29 1 3.8531 0.4370 1.3574 30 1 7.2197 -0.8024 2.1912 31 1 1.4153 -2.6660 -1.6946 32 1 0.1034 -1.6004 -1.1065 33 1 -0.4257 0.4728 -4.0024 34 1 -0.9136 0.0049 -2.3443 35 1 0.6740 1.4696 -1.4143 36 1 1.1255 1.9755 -3.0719 37 1 2.1179 -0.0893 -4.4952 38 1 2.8937 -1.4403 -3.5813 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172500025.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:54 Heat of formation + Delta-G solvation = 13.808084 kcal Electronic energy + Delta-G solvation = -16187.813325 eV Core-core repulsion = 13837.298933 eV Total energy + Delta-G solvation = -2350.514392 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.03248 -36.72647 -34.82705 -31.94954 -31.36307 -30.60347 -28.05644 -26.95325 -24.44102 -22.97746 -21.56425 -21.19569 -19.27166 -18.33931 -17.49062 -17.04918 -16.54183 -16.37626 -14.88695 -14.63165 -14.27601 -14.12260 -13.68830 -13.41633 -13.22404 -12.84975 -12.70043 -12.61228 -12.45807 -12.31476 -12.22830 -11.94960 -11.79759 -11.64158 -11.40136 -11.37052 -11.22829 -10.99872 -10.82706 -10.50712 -8.87375 -8.15324 -6.26274 1.38226 1.39375 1.52579 2.42511 3.08559 3.16638 3.55052 3.62595 3.86017 4.01946 4.20453 4.27332 4.33342 4.43495 4.50350 4.55058 4.69475 4.73494 4.86727 4.88945 4.92811 4.99762 5.02288 5.11191 5.15061 5.18130 5.19978 5.30399 5.37811 5.43169 5.51455 5.57350 5.87505 6.00184 6.22506 6.33311 6.41120 6.93271 7.41909 8.96396 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.047350 B = 0.006490 C = 0.006213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.204992 B = 4313.469509 C = 4505.407710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.082 3.918 3 H 0.055 0.945 4 C -0.085 4.085 5 C 0.041 3.959 6 C -0.543 4.543 7 H 0.054 0.946 8 C -0.003 4.003 9 N -0.934 5.934 10 Si 0.964 3.036 11 H -0.263 1.263 12 H -0.278 1.278 13 H -0.277 1.277 14 N -0.535 5.535 15 C 0.019 3.981 16 C -0.111 4.111 17 H 0.124 0.876 18 C -0.118 4.118 19 C -0.166 4.166 20 C 0.045 3.955 21 H 0.088 0.912 22 C -0.119 4.119 23 H 0.061 0.939 24 H 0.101 0.899 25 H 0.063 0.937 26 H 0.046 0.954 27 H 0.040 0.960 28 H 0.000 1.000 29 H -0.024 1.024 30 H 0.261 0.739 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.257 1.764 -11.261 18.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.027 4.027 3 H 0.073 0.927 4 C -0.123 4.123 5 C 0.004 3.996 6 C -0.581 4.581 7 H 0.072 0.928 8 C -0.200 4.200 9 N -0.574 5.574 10 Si 0.789 3.211 11 H -0.187 1.187 12 H -0.203 1.203 13 H -0.202 1.202 14 N -0.259 5.259 15 C -0.109 4.109 16 C -0.129 4.129 17 H 0.142 0.858 18 C -0.155 4.155 19 C -0.204 4.204 20 C -0.063 4.063 21 H 0.106 0.894 22 C -0.157 4.157 23 H 0.080 0.920 24 H 0.119 0.881 25 H 0.082 0.918 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.018 0.982 29 H -0.006 1.006 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.611 1.530 -11.102 17.631 hybrid contribution 0.400 0.105 0.814 0.913 sum -13.211 1.636 -10.288 16.824 Atomic orbital electron populations 1.23069 0.95344 1.02244 1.04541 1.21717 0.93940 0.96326 0.90711 0.92661 1.21450 0.96586 0.98682 0.95580 1.18792 0.92170 0.93698 0.94968 1.21830 0.92579 1.34352 1.09339 0.92777 1.25989 0.97331 0.96501 1.00151 1.70135 1.02566 1.45716 1.39019 0.85419 0.78378 0.78303 0.79050 1.18700 1.20349 1.20218 1.64566 1.41561 1.15711 1.04058 1.23702 0.95389 0.95920 0.95842 1.23980 0.95589 0.97665 0.95697 0.85808 1.23308 0.96918 0.93878 1.01384 1.24070 0.95741 0.98726 1.01914 1.24336 0.97229 0.93555 0.91138 0.89354 1.23621 0.97035 0.98269 0.96766 0.92030 0.88076 0.91819 0.93496 0.94080 0.98191 1.00579 0.92982 0.92836 0.89643 0.89483 0.90517 0.90390 0.90769 0.88966 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.18 6.92 71.98 0.50 -4.68 16 2 C 0.08 2.93 1.86 44.92 0.08 3.01 16 3 H 0.06 2.09 7.02 -2.39 -0.02 2.08 16 4 C -0.08 -3.79 4.80 30.59 0.15 -3.65 16 5 C 0.04 2.33 4.86 29.85 0.15 2.47 16 6 C -0.54 -33.04 9.11 25.60 0.23 -32.80 16 7 H 0.05 3.17 7.74 -2.91 -0.02 3.15 16 8 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 9 N -0.93 -59.83 13.29 21.45 0.28 -59.55 16 10 Si 0.96 46.44 29.54 68.60 2.03 48.47 16 11 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 13 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 14 N -0.53 -18.85 4.58 -815.90 -3.74 -22.59 16 15 C 0.02 0.53 5.99 87.11 0.52 1.05 16 16 C -0.11 -2.32 5.28 -7.22 -0.04 -2.36 16 17 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 18 C -0.12 -2.15 5.96 33.37 0.20 -1.95 16 19 C -0.17 -3.82 5.72 33.32 0.19 -3.63 16 20 C 0.05 1.35 4.94 46.78 0.23 1.59 16 21 H 0.09 2.96 8.14 -2.39 -0.02 2.95 16 22 C -0.12 -2.92 6.60 33.42 0.22 -2.70 16 23 H 0.06 1.53 8.14 -2.39 -0.02 1.52 16 24 H 0.10 2.25 2.30 -2.39 -0.01 2.25 16 25 H 0.06 1.66 6.49 -2.39 -0.02 1.64 16 26 H 0.05 2.02 8.14 -2.39 -0.02 2.01 16 27 H 0.04 1.84 8.14 -2.39 -0.02 1.83 16 28 H 0.00 -0.02 7.75 -2.39 -0.02 -0.04 16 29 H -0.02 -1.50 8.14 -2.39 -0.02 -1.52 16 30 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 31 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.09 2.22 4.11 -2.38 -0.01 2.21 16 33 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.08 1.31 5.95 -2.39 -0.01 1.30 16 35 H 0.08 1.93 4.32 -2.39 -0.01 1.92 16 36 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 Total: -1.00 -69.37 279.78 2.49 -66.88 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 1.02 Total: 10.14 kcal Atomic # 6 Polarization: -46.24 SS G_CDS: 2.89 Total: -43.35 kcal Atomic # 7 Polarization: -78.69 SS G_CDS: -3.45 Total: -82.14 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -69.37 2.49 -66.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172500025.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.690 kcal (2) G-P(sol) polarization free energy of solvation -69.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds