Wall clock time and date at job start Sun Mar 29 2020 21:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 5 5 C 1.53003 * 109.46754 * 174.99829 * 4 2 1 6 6 C 1.50702 * 109.46809 * 179.97438 * 5 4 2 7 7 H 1.07997 * 120.00460 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99585 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00393 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99559 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47417 * 60.00177 * 10 8 6 12 12 H 1.48509 * 109.47007 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47390 * 299.99850 * 10 8 6 14 14 N 1.46899 * 109.47254 * 120.00004 * 2 1 3 15 15 C 1.46654 * 110.99921 * 60.48997 * 14 2 1 16 16 C 1.53304 * 108.82364 * 179.63848 * 15 14 2 17 17 C 1.53056 * 108.36984 * 73.71252 * 16 15 14 18 18 C 1.52371 * 109.84142 * 306.94312 * 17 16 15 19 19 H 1.09001 * 114.52860 * 165.33305 * 18 17 16 20 20 C 1.52374 * 119.47141 * 310.08232 * 18 17 16 21 21 C 1.46504 * 111.00201 * 295.00040 * 14 2 1 22 22 H 1.08997 * 115.37226 * 358.67329 * 21 14 2 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 25 25 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 26 26 H 1.09000 * 109.47059 * 294.99790 * 4 2 1 27 27 H 1.08996 * 109.47073 * 54.99883 * 4 2 1 28 28 H 1.09000 * 109.47306 * 299.99810 * 5 4 2 29 29 H 1.09000 * 109.46927 * 59.99869 * 5 4 2 30 30 H 0.96996 * 119.99734 * 179.97438 * 9 8 6 31 31 H 1.09005 * 109.57573 * 299.43253 * 15 14 2 32 32 H 1.08998 * 109.57967 * 59.83273 * 15 14 2 33 33 H 1.09008 * 109.68058 * 313.99569 * 16 15 14 34 34 H 1.09002 * 109.71647 * 193.45195 * 16 15 14 35 35 H 1.09007 * 109.41280 * 186.82724 * 17 16 15 36 36 H 1.09005 * 109.34873 * 67.01509 * 17 16 15 37 37 H 1.09000 * 117.53388 * 1.71132 * 20 18 17 38 38 H 1.09004 * 117.58386 * 216.46902 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 6 4.0671 -1.3241 -2.5440 7 1 3.3687 -1.8045 -3.2131 8 6 5.4184 -1.3612 -2.8151 9 7 6.2691 -0.7767 -2.0001 10 14 6.0410 -2.2418 -4.3404 11 1 5.4495 -1.6154 -5.5499 12 1 7.5212 -2.1382 -4.4023 13 1 5.6476 -3.6725 -4.2813 14 7 2.0197 -0.6925 1.1994 15 6 1.5590 -2.0845 1.2274 16 6 2.1042 -2.7606 2.4907 17 6 1.3206 -2.2348 3.6957 18 6 1.3473 -0.7113 3.7052 19 1 0.6175 -0.2500 4.3705 20 6 2.6779 0.0160 3.5557 21 6 1.6497 0.0372 2.4148 22 1 1.1043 0.9669 2.2536 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3635 0.5138 -0.8899 26 1 1.7515 -1.7715 -1.2057 27 1 1.6053 -0.2617 -2.1370 28 1 3.8531 0.4371 -1.3574 29 1 3.9994 -1.0727 -0.4260 30 1 7.2197 -0.8031 -2.1907 31 1 0.4693 -2.1084 1.2418 32 1 1.9263 -2.6086 0.3451 33 1 3.1614 -2.5219 2.6077 34 1 1.9780 -3.8405 2.4135 35 1 1.7723 -2.6107 4.6138 36 1 0.2881 -2.5785 3.6330 37 1 3.5718 -0.5921 3.4172 38 1 2.8176 0.9350 4.1252 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172508668.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:47 Heat of formation + Delta-G solvation = 11.164124 kcal Electronic energy + Delta-G solvation = -15972.796928 eV Core-core repulsion = 13622.167885 eV Total energy + Delta-G solvation = -2350.629042 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.75658 -36.00746 -32.98877 -32.51638 -30.50785 -28.85974 -25.58290 -25.07243 -22.93293 -21.81659 -20.76321 -19.42852 -18.13834 -16.37906 -16.04041 -14.90850 -14.39339 -14.35196 -14.14713 -13.68476 -13.16893 -12.97347 -12.66112 -12.15543 -12.02100 -11.68051 -11.41560 -11.24085 -10.84588 -10.84063 -10.74639 -10.49231 -10.41192 -10.15498 -10.00954 -9.55876 -9.52933 -9.14538 -8.86514 -8.21406 -7.56385 -5.86805 -3.88534 3.39170 3.43527 3.45865 3.99251 4.19937 4.54947 4.90376 5.02904 5.17085 5.26930 5.32486 5.45119 5.48261 5.52431 5.59393 5.70508 5.79721 5.88570 6.03106 6.05875 6.08485 6.12959 6.18461 6.31639 6.38182 6.39405 6.52346 6.57402 6.72219 6.91791 7.30647 7.64264 7.68648 7.86487 8.08657 8.23816 8.58232 9.20380 9.74037 11.24027 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.035280 B = 0.006838 C = 0.006501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.458852 B = 4094.052042 C = 4306.066518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.083 3.917 3 H 0.078 0.922 4 C -0.105 4.105 5 C 0.030 3.970 6 C -0.521 4.521 7 H 0.050 0.950 8 C 0.057 3.943 9 N -0.893 5.893 10 Si 0.887 3.113 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.278 1.278 14 N -0.488 5.488 15 C 0.053 3.947 16 C -0.123 4.123 17 C -0.087 4.087 18 C -0.166 4.166 19 H 0.093 0.907 20 C -0.171 4.171 21 C 0.028 3.972 22 H 0.098 0.902 23 H 0.054 0.946 24 H 0.046 0.954 25 H 0.057 0.943 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.010 0.990 29 H 0.031 0.969 30 H 0.259 0.741 31 H 0.031 0.969 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.100 0.900 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.982 -0.458 10.313 15.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.025 4.025 3 H 0.096 0.904 4 C -0.142 4.142 5 C -0.007 4.007 6 C -0.559 4.559 7 H 0.068 0.932 8 C -0.143 4.143 9 N -0.533 5.533 10 Si 0.715 3.285 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.204 1.204 14 N -0.210 5.210 15 C -0.074 4.074 16 C -0.161 4.161 17 C -0.124 4.124 18 C -0.185 4.185 19 H 0.111 0.889 20 C -0.209 4.209 21 C -0.082 4.082 22 H 0.116 0.884 23 H 0.073 0.927 24 H 0.065 0.935 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.028 0.972 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.049 0.951 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.118 0.882 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.280 -0.439 10.291 14.553 hybrid contribution -0.443 -0.353 -0.776 0.961 sum -10.723 -0.792 9.515 14.358 Atomic orbital electron populations 1.22516 0.98788 1.01626 1.01235 1.21917 0.91085 0.98667 0.90829 0.90396 1.21765 1.00886 0.98358 0.93214 1.18993 0.87997 0.96768 0.96929 1.21306 0.91843 1.34224 1.08544 0.93187 1.24995 0.97133 0.95760 0.96457 1.69971 1.02202 1.44219 1.36892 0.86754 0.77604 0.80262 0.83892 1.20413 1.21386 1.20405 1.61620 1.58138 1.01302 0.99907 1.22159 0.96905 0.89385 0.98934 1.21731 1.01100 0.99224 0.94047 1.20924 1.00062 0.92819 0.98598 1.22223 1.00247 0.95214 1.00834 0.88916 1.23186 0.93701 1.01708 1.02280 1.22346 1.01333 0.98414 0.86131 0.88448 0.92706 0.93480 0.92386 0.93235 0.93229 0.97195 0.95085 0.93173 0.95060 0.89435 0.90566 0.91596 0.91866 0.92185 0.88153 0.89395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.63 8.61 37.16 0.32 -2.31 16 2 C 0.08 1.46 2.22 -67.71 -0.15 1.31 16 3 H 0.08 1.43 8.13 -51.93 -0.42 1.01 16 4 C -0.10 -2.19 4.40 -26.73 -0.12 -2.30 16 5 C 0.03 0.80 4.86 -27.88 -0.14 0.66 16 6 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 7 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 9 N -0.89 -27.55 13.29 55.43 0.74 -26.81 16 10 Si 0.89 22.13 29.54 -169.99 -5.02 17.10 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 14 N -0.49 -8.41 4.07 -219.15 -0.89 -9.30 16 15 C 0.05 0.85 4.68 -3.80 -0.02 0.83 16 16 C -0.12 -1.73 5.80 -26.55 -0.15 -1.88 16 17 C -0.09 -1.04 6.01 -27.02 -0.16 -1.20 16 18 C -0.17 -2.09 6.07 -91.66 -0.56 -2.64 16 19 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 20 C -0.17 -2.37 9.90 -26.74 -0.26 -2.63 16 21 C 0.03 0.41 5.10 -68.02 -0.35 0.06 16 22 H 0.10 1.36 7.02 -51.93 -0.36 1.00 16 23 H 0.05 0.78 6.43 -51.93 -0.33 0.45 16 24 H 0.05 0.62 6.84 -51.93 -0.35 0.26 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.05 1.02 6.13 -51.93 -0.32 0.70 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.03 0.88 7.75 -51.93 -0.40 0.48 16 30 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 31 H 0.03 0.46 6.25 -51.93 -0.32 0.14 16 32 H 0.09 1.57 6.18 -51.93 -0.32 1.24 16 33 H 0.08 1.20 7.23 -51.92 -0.38 0.83 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.10 1.55 7.26 -51.93 -0.38 1.18 16 38 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 290.84 15.07 4.38 4.38 Total: -1.00 -30.30 290.84 -9.31 -39.61 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -6.52 Total: -1.06 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: -2.00 Total: -23.93 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: -0.15 Total: -36.11 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.30 -9.31 -39.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172508668.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.777 kcal (2) G-P(sol) polarization free energy of solvation -30.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds