Wall clock time and date at job start Sun Mar 29 2020 21:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 115.55241 * 2 1 4 4 C 1.53002 * 117.49883 * 145.71388 * 2 1 3 5 5 C 1.53004 * 60.00186 * 107.48912 * 4 2 1 6 6 H 1.08995 * 117.52010 * 107.48287 * 5 4 2 7 7 N 1.46901 * 117.49566 * 252.51349 * 5 4 2 8 8 C 1.46905 * 110.99811 * 223.62082 * 7 5 4 9 9 C 1.52997 * 109.47305 * 84.99969 * 8 7 5 10 10 C 1.52999 * 109.47592 * 180.02562 * 9 8 7 11 11 C 1.53006 * 109.46626 * 300.00035 * 10 9 8 12 12 C 1.50699 * 109.46866 * 179.97438 * 11 10 9 13 13 H 1.08003 * 119.99963 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00270 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00302 * 179.97438 * 14 12 11 16 16 Si 1.86805 * 119.99832 * 0.02562 * 14 12 11 17 17 H 1.48506 * 109.47310 * 89.99428 * 16 14 12 18 18 H 1.48491 * 109.47296 * 209.99911 * 16 14 12 19 19 H 1.48502 * 109.46905 * 329.99956 * 16 14 12 20 20 C 1.52997 * 109.47164 * 59.99702 * 11 10 9 21 21 C 1.52996 * 109.46987 * 205.00050 * 8 7 5 22 22 H 1.09006 * 109.47290 * 205.66420 * 1 2 3 23 23 H 1.08998 * 109.46988 * 325.66574 * 1 2 3 24 24 H 1.09000 * 109.46970 * 85.67150 * 1 2 3 25 25 H 1.09003 * 117.49904 * 359.97438 * 4 2 1 26 26 H 1.08999 * 117.49729 * 214.97903 * 4 2 1 27 27 H 1.00903 * 111.00329 * 347.56692 * 7 5 4 28 28 H 1.09000 * 109.47082 * 324.99859 * 8 7 5 29 29 H 1.09000 * 109.47140 * 59.99927 * 9 8 7 30 30 H 1.09002 * 109.47045 * 300.00019 * 9 8 7 31 31 H 1.08993 * 109.47839 * 180.02562 * 10 9 8 32 32 H 1.09000 * 109.47160 * 59.99666 * 10 9 8 33 33 H 1.09000 * 109.47050 * 299.99699 * 11 10 9 34 34 H 0.97002 * 119.99998 * 179.97438 * 15 14 12 35 35 H 1.09000 * 109.47140 * 60.00051 * 20 11 10 36 36 H 1.09001 * 109.47230 * 179.97438 * 20 11 10 37 37 H 1.08992 * 109.47534 * 60.00146 * 21 8 7 38 38 H 1.08996 * 109.47134 * 299.99341 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9833 0.0000 4 6 2.2365 -1.1213 0.7645 5 6 2.2365 -1.1207 -0.7655 6 1 3.1713 -0.8746 -1.2690 7 7 1.3938 -2.1143 -1.4441 8 6 2.1099 -2.7323 -2.5681 9 6 2.9567 -3.8983 -2.0541 10 6 3.7031 -4.5416 -3.2246 11 6 2.6931 -5.0584 -4.2511 12 6 3.4282 -5.6915 -5.4043 13 1 4.5078 -5.7217 -5.4052 14 6 2.7226 -6.2321 -6.4583 15 7 3.3641 -6.7841 -7.4649 16 14 0.8553 -6.1791 -6.4571 17 1 0.3951 -4.9292 -7.1137 18 1 0.3264 -7.3517 -7.1989 19 1 0.3600 -6.2143 -5.0576 20 6 1.8462 -3.8925 -4.7651 21 6 1.0995 -3.2493 -3.5942 22 1 -0.3634 -0.9263 0.4451 23 1 -0.3633 0.8486 0.5796 24 1 -0.3633 0.0776 -1.0247 25 1 1.6112 -1.8588 1.2679 26 1 3.1715 -0.8757 1.2679 27 1 1.0663 -2.8144 -0.7954 28 1 2.7577 -1.9919 -3.0373 29 1 2.3089 -4.6387 -1.5849 30 1 3.6766 -3.5300 -1.3231 31 1 4.3061 -5.3725 -2.8585 32 1 4.3510 -3.8009 -3.6934 33 1 2.0452 -5.7991 -3.7822 34 1 2.8676 -7.1647 -8.2062 35 1 2.4941 -3.1519 -5.2340 36 1 1.1270 -4.2606 -5.4967 37 1 0.4963 -2.4187 -3.9604 38 1 0.4518 -3.9897 -3.1250 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173324597.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:14 Heat of formation + Delta-G solvation = 3.376984 kcal Electronic energy + Delta-G solvation = -15715.841832 eV Core-core repulsion = 13364.875114 eV Total energy + Delta-G solvation = -2350.966718 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.95297 -37.33312 -33.64888 -31.78491 -30.11055 -28.78941 -27.81965 -24.02248 -22.10464 -21.89098 -20.60641 -19.99936 -18.88640 -16.62206 -16.23683 -15.34866 -14.81104 -14.06464 -13.56804 -13.31428 -13.13538 -13.00424 -12.73621 -12.58414 -12.31876 -11.95304 -11.69675 -11.46885 -11.35722 -10.88653 -10.66074 -10.50122 -10.47377 -10.04009 -9.86256 -9.82509 -9.53105 -8.97970 -8.88145 -8.48633 -8.01784 -6.03551 -4.02103 3.30698 3.41142 3.43715 3.73719 4.16682 4.44986 4.76061 4.83948 5.05933 5.22395 5.28938 5.31983 5.41959 5.56123 5.70081 5.75543 5.80720 5.88249 5.92196 6.04230 6.07935 6.17605 6.23790 6.26315 6.33735 6.42691 6.59331 6.62930 6.75523 6.95814 7.04023 7.26631 7.33424 7.49701 7.61628 7.83241 8.57163 9.00788 9.59809 11.09948 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.051835 B = 0.006362 C = 0.005888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.048399 B = 4400.285296 C = 4754.396628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.150 4.150 3 H 0.099 0.901 4 C -0.207 4.207 5 C 0.033 3.967 6 H 0.107 0.893 7 N -0.653 5.653 8 C 0.094 3.906 9 C -0.145 4.145 10 C -0.095 4.095 11 C 0.014 3.986 12 C -0.513 4.513 13 H 0.072 0.928 14 C 0.068 3.932 15 N -0.904 5.904 16 Si 0.888 3.112 17 H -0.279 1.279 18 H -0.299 1.299 19 H -0.265 1.265 20 C -0.119 4.119 21 C -0.106 4.106 22 H 0.052 0.948 23 H 0.047 0.953 24 H 0.064 0.936 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.340 0.660 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.025 0.975 34 H 0.263 0.737 35 H 0.058 0.942 36 H 0.047 0.953 37 H 0.055 0.945 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.443 11.029 14.100 18.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.170 4.170 3 H 0.117 0.883 4 C -0.246 4.246 5 C -0.078 4.078 6 H 0.125 0.875 7 N -0.281 5.281 8 C -0.015 4.015 9 C -0.184 4.184 10 C -0.133 4.133 11 C -0.005 4.005 12 C -0.551 4.551 13 H 0.090 0.910 14 C -0.133 4.133 15 N -0.543 5.543 16 Si 0.719 3.281 17 H -0.206 1.206 18 H -0.227 1.227 19 H -0.190 1.190 20 C -0.157 4.157 21 C -0.144 4.144 22 H 0.071 0.929 23 H 0.066 0.934 24 H 0.083 0.917 25 H 0.111 0.889 26 H 0.108 0.892 27 H 0.159 0.841 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.043 0.957 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.793 11.390 13.520 18.316 hybrid contribution -0.320 -0.586 0.350 0.754 sum -5.114 10.803 13.870 18.309 Atomic orbital electron populations 1.21132 0.92598 1.00792 1.02056 1.22545 0.95996 0.94093 1.04371 0.88295 1.23563 1.02657 1.02744 0.95652 1.22538 0.96870 0.97578 0.90850 0.87549 1.60342 1.37731 1.18110 1.11918 1.21675 0.94232 0.94781 0.90855 1.22307 0.99081 0.98103 0.98908 1.21378 0.98149 0.99052 0.94707 1.19152 0.93786 0.92860 0.94703 1.21100 0.94908 1.36557 1.02488 0.91027 1.25034 0.98244 0.94716 0.95326 1.69908 1.35752 1.39419 1.09207 0.86828 0.86556 0.76360 0.78368 1.20631 1.22717 1.19019 1.21974 0.98520 0.99301 0.95922 1.21562 0.97370 0.99398 0.96112 0.92906 0.93372 0.91657 0.88914 0.89170 0.84108 0.90604 0.92505 0.93347 0.92862 0.92827 0.95741 0.92768 0.92280 0.93519 0.92579 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 9.64 37.16 0.36 -0.74 16 2 C -0.15 -1.56 6.41 -90.61 -0.58 -2.14 16 3 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 4 C -0.21 -2.08 9.88 -26.73 -0.26 -2.34 16 5 C 0.03 0.38 6.07 -67.71 -0.41 -0.03 16 6 H 0.11 1.27 7.60 -51.93 -0.39 0.87 16 7 N -0.65 -8.59 5.90 -99.73 -0.59 -9.18 16 8 C 0.09 1.44 2.43 -67.71 -0.16 1.28 16 9 C -0.14 -2.30 5.17 -26.73 -0.14 -2.44 16 10 C -0.09 -1.85 5.14 -26.73 -0.14 -1.99 16 11 C 0.01 0.32 1.69 -91.77 -0.16 0.16 16 12 C -0.51 -14.45 9.14 -34.44 -0.31 -14.76 16 13 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 14 C 0.07 1.97 5.45 -17.82 -0.10 1.88 16 15 N -0.90 -27.99 13.96 55.43 0.77 -27.21 16 16 Si 0.89 22.30 24.37 -169.99 -4.14 18.15 16 17 H -0.28 -6.85 6.87 56.52 0.39 -6.46 16 18 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 19 H -0.27 -6.37 6.53 56.52 0.37 -6.00 16 20 C -0.12 -2.56 4.68 -26.71 -0.13 -2.68 16 21 C -0.11 -1.87 5.53 -26.71 -0.15 -2.02 16 22 H 0.05 0.54 7.90 -51.93 -0.41 0.13 16 23 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.09 0.91 7.99 -51.93 -0.42 0.49 16 26 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.34 4.25 8.26 -39.29 -0.32 3.93 16 28 H 0.08 1.20 7.57 -51.93 -0.39 0.81 16 29 H 0.06 0.90 8.13 -51.93 -0.42 0.47 16 30 H 0.05 0.70 8.07 -51.93 -0.42 0.28 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.02 0.59 7.20 -51.93 -0.37 0.22 16 34 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 291.54 15.07 4.39 4.39 Total: -1.00 -29.28 291.54 -8.47 -37.75 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -6.73 Total: 1.93 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: -2.18 Total: -25.83 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.19 Total: -36.39 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.14 Total: 18.15 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.28 -8.47 -37.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324597.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.129 kcal (2) G-P(sol) polarization free energy of solvation -29.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds