Wall clock time and date at job start Sun Mar 29 2020 21:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 115.55241 * 2 1 4 4 C 1.53002 * 117.49883 * 145.71388 * 2 1 3 5 5 C 1.53004 * 60.00186 * 107.48912 * 4 2 1 6 6 H 1.08995 * 117.52010 * 107.48287 * 5 4 2 7 7 N 1.46901 * 117.49566 * 252.51349 * 5 4 2 8 8 C 1.46905 * 110.99811 * 223.62082 * 7 5 4 9 9 C 1.52997 * 109.47305 * 84.99969 * 8 7 5 10 10 C 1.52999 * 109.47592 * 180.02562 * 9 8 7 11 11 C 1.53006 * 109.46626 * 300.00035 * 10 9 8 12 12 C 1.50699 * 109.46866 * 179.97438 * 11 10 9 13 13 H 1.08003 * 119.99963 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00270 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00302 * 179.97438 * 14 12 11 16 16 Si 1.86805 * 119.99832 * 0.02562 * 14 12 11 17 17 H 1.48506 * 109.47310 * 89.99428 * 16 14 12 18 18 H 1.48491 * 109.47296 * 209.99911 * 16 14 12 19 19 H 1.48502 * 109.46905 * 329.99956 * 16 14 12 20 20 C 1.52997 * 109.47164 * 59.99702 * 11 10 9 21 21 C 1.52996 * 109.46987 * 205.00050 * 8 7 5 22 22 H 1.09006 * 109.47290 * 205.66420 * 1 2 3 23 23 H 1.08998 * 109.46988 * 325.66574 * 1 2 3 24 24 H 1.09000 * 109.46970 * 85.67150 * 1 2 3 25 25 H 1.09003 * 117.49904 * 359.97438 * 4 2 1 26 26 H 1.08999 * 117.49729 * 214.97903 * 4 2 1 27 27 H 1.00903 * 111.00329 * 347.56692 * 7 5 4 28 28 H 1.09000 * 109.47082 * 324.99859 * 8 7 5 29 29 H 1.09000 * 109.47140 * 59.99927 * 9 8 7 30 30 H 1.09002 * 109.47045 * 300.00019 * 9 8 7 31 31 H 1.08993 * 109.47839 * 180.02562 * 10 9 8 32 32 H 1.09000 * 109.47160 * 59.99666 * 10 9 8 33 33 H 1.09000 * 109.47050 * 299.99699 * 11 10 9 34 34 H 0.97002 * 119.99998 * 179.97438 * 15 14 12 35 35 H 1.09000 * 109.47140 * 60.00051 * 20 11 10 36 36 H 1.09001 * 109.47230 * 179.97438 * 20 11 10 37 37 H 1.08992 * 109.47534 * 60.00146 * 21 8 7 38 38 H 1.08996 * 109.47134 * 299.99341 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9833 0.0000 4 6 2.2365 -1.1213 0.7645 5 6 2.2365 -1.1207 -0.7655 6 1 3.1713 -0.8746 -1.2690 7 7 1.3938 -2.1143 -1.4441 8 6 2.1099 -2.7323 -2.5681 9 6 2.9567 -3.8983 -2.0541 10 6 3.7031 -4.5416 -3.2246 11 6 2.6931 -5.0584 -4.2511 12 6 3.4282 -5.6915 -5.4043 13 1 4.5078 -5.7217 -5.4052 14 6 2.7226 -6.2321 -6.4583 15 7 3.3641 -6.7841 -7.4649 16 14 0.8553 -6.1791 -6.4571 17 1 0.3951 -4.9292 -7.1137 18 1 0.3264 -7.3517 -7.1989 19 1 0.3600 -6.2143 -5.0576 20 6 1.8462 -3.8925 -4.7651 21 6 1.0995 -3.2493 -3.5942 22 1 -0.3634 -0.9263 0.4451 23 1 -0.3633 0.8486 0.5796 24 1 -0.3633 0.0776 -1.0247 25 1 1.6112 -1.8588 1.2679 26 1 3.1715 -0.8757 1.2679 27 1 1.0663 -2.8144 -0.7954 28 1 2.7577 -1.9919 -3.0373 29 1 2.3089 -4.6387 -1.5849 30 1 3.6766 -3.5300 -1.3231 31 1 4.3061 -5.3725 -2.8585 32 1 4.3510 -3.8009 -3.6934 33 1 2.0452 -5.7991 -3.7822 34 1 2.8676 -7.1647 -8.2062 35 1 2.4941 -3.1519 -5.2340 36 1 1.1270 -4.2606 -5.4967 37 1 0.4963 -2.4187 -3.9604 38 1 0.4518 -3.9897 -3.1250 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173324597.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:14 Heat of formation + Delta-G solvation = -14.697865 kcal Electronic energy + Delta-G solvation = -15716.625616 eV Core-core repulsion = 13364.875114 eV Total energy + Delta-G solvation = -2351.750502 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.15927 -38.51606 -35.29836 -33.61446 -31.62197 -30.13170 -28.84828 -25.87223 -23.61067 -22.74321 -22.16422 -20.94142 -20.36592 -18.77474 -17.40422 -16.65848 -16.21225 -15.35487 -15.07578 -14.94345 -14.60326 -14.48903 -14.04653 -13.78909 -13.43523 -13.24290 -13.09428 -12.84400 -12.59352 -12.26805 -12.15537 -12.03713 -11.89559 -11.64380 -11.45921 -11.16605 -10.91874 -10.88876 -10.64043 -10.48796 -9.03666 -8.29602 -6.32639 1.30771 1.35531 1.46674 2.32983 2.88832 3.06348 3.18326 3.85664 3.95864 3.99798 4.05475 4.25874 4.32480 4.48380 4.53317 4.57885 4.60417 4.71819 4.79092 4.84219 4.89289 4.97714 5.04506 5.06457 5.13153 5.19866 5.25369 5.29463 5.36672 5.40028 5.56407 5.61275 5.71738 5.82647 6.20311 6.33691 6.50681 6.75455 7.33173 8.87610 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.051835 B = 0.006362 C = 0.005888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.048399 B = 4400.285296 C = 4754.396628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.149 4.149 3 H 0.108 0.892 4 C -0.194 4.194 5 C 0.014 3.986 6 H 0.104 0.896 7 N -0.650 5.650 8 C 0.103 3.897 9 C -0.132 4.132 10 C -0.092 4.092 11 C 0.013 3.987 12 C -0.519 4.519 13 H 0.030 0.970 14 C 0.009 3.991 15 N -0.954 5.954 16 Si 0.951 3.049 17 H -0.268 1.268 18 H -0.301 1.301 19 H -0.245 1.245 20 C -0.117 4.117 21 C -0.099 4.099 22 H 0.051 0.949 23 H 0.060 0.940 24 H 0.052 0.948 25 H 0.097 0.903 26 H 0.101 0.899 27 H 0.345 0.655 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.044 0.956 32 H 0.046 0.954 33 H 0.021 0.979 34 H 0.264 0.736 35 H 0.051 0.949 36 H 0.032 0.968 37 H 0.067 0.933 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.129 12.509 16.378 21.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.168 4.168 3 H 0.126 0.874 4 C -0.233 4.233 5 C -0.097 4.097 6 H 0.122 0.878 7 N -0.278 5.278 8 C -0.006 4.006 9 C -0.171 4.171 10 C -0.130 4.130 11 C -0.006 4.006 12 C -0.557 4.557 13 H 0.048 0.952 14 C -0.187 4.187 15 N -0.594 5.594 16 Si 0.779 3.221 17 H -0.194 1.194 18 H -0.229 1.229 19 H -0.169 1.169 20 C -0.155 4.155 21 C -0.137 4.137 22 H 0.070 0.930 23 H 0.079 0.921 24 H 0.071 0.929 25 H 0.115 0.885 26 H 0.119 0.881 27 H 0.165 0.835 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.039 0.961 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.050 0.950 37 H 0.086 0.914 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.478 12.890 15.831 21.418 hybrid contribution 0.326 -1.043 -0.350 1.147 sum -6.152 11.848 15.480 20.442 Atomic orbital electron populations 1.21118 0.92462 1.01378 1.01488 1.22638 0.96156 0.94409 1.03620 0.87379 1.23598 1.03082 1.02307 0.94279 1.22580 0.97053 0.98114 0.91961 0.87815 1.60262 1.37623 1.18129 1.11798 1.21453 0.93492 0.94430 0.91271 1.22198 0.99277 0.98196 0.97454 1.21288 0.97518 0.98845 0.95350 1.19126 0.94398 0.93369 0.93689 1.21486 0.93499 1.36488 1.04275 0.95165 1.25909 1.03499 0.94428 0.94877 1.70061 1.37911 1.41166 1.10311 0.85797 0.80348 0.76559 0.79438 1.19439 1.22882 1.16896 1.21848 0.98060 0.98425 0.97199 1.21458 0.97508 0.99605 0.95105 0.92974 0.92075 0.92889 0.88457 0.88070 0.83505 0.90963 0.91850 0.91235 0.93683 0.93501 0.96119 0.92669 0.92997 0.94954 0.91431 0.92380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.86 9.64 71.98 0.69 -1.17 16 2 C -0.15 -2.62 6.41 -10.79 -0.07 -2.69 16 3 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 4 C -0.19 -3.21 9.88 30.60 0.30 -2.90 16 5 C 0.01 0.28 6.07 44.92 0.27 0.55 16 6 H 0.10 2.18 7.60 -2.39 -0.02 2.17 16 7 N -0.65 -15.03 5.90 -469.45 -2.77 -17.80 16 8 C 0.10 2.90 2.43 44.91 0.11 3.01 16 9 C -0.13 -3.85 5.17 30.59 0.16 -3.69 16 10 C -0.09 -3.54 5.14 30.60 0.16 -3.38 16 11 C 0.01 0.60 1.69 -11.54 -0.02 0.58 16 12 C -0.52 -30.13 9.14 25.60 0.23 -29.90 16 13 H 0.03 1.94 7.99 -2.91 -0.02 1.91 16 14 C 0.01 0.55 5.45 84.65 0.46 1.01 16 15 N -0.95 -60.94 13.96 21.45 0.30 -60.64 16 16 Si 0.95 46.07 24.37 68.60 1.67 47.74 16 17 H -0.27 -12.43 6.87 99.48 0.68 -11.74 16 18 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 19 H -0.25 -10.97 6.53 99.48 0.65 -10.32 16 20 C -0.12 -4.87 4.68 30.61 0.14 -4.73 16 21 C -0.10 -3.21 5.53 30.61 0.17 -3.04 16 22 H 0.05 0.90 7.90 -2.38 -0.02 0.88 16 23 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.10 1.55 7.99 -2.39 -0.02 1.53 16 26 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.35 7.39 8.26 -89.69 -0.74 6.65 16 28 H 0.07 2.11 7.57 -2.39 -0.02 2.09 16 29 H 0.06 1.79 8.13 -2.39 -0.02 1.77 16 30 H 0.07 1.77 8.07 -2.39 -0.02 1.75 16 31 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.02 0.97 7.20 -2.39 -0.02 0.96 16 34 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 35 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.03 1.43 3.27 -2.39 -0.01 1.42 16 37 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -64.06 291.54 2.01 -62.05 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.19 Total: 15.00 kcal Atomic # 6 Polarization: -48.97 SS G_CDS: 2.61 Total: -46.36 kcal Atomic # 7 Polarization: -75.96 SS G_CDS: -2.47 Total: -78.43 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 1.67 Total: 47.74 kcal Total: -64.06 2.01 -62.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324597.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.353 kcal (2) G-P(sol) polarization free energy of solvation -64.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds