Wall clock time and date at job start Sun Mar 29 2020 21:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 112.74204 * 2 1 4 4 C 1.53513 * 113.52854 * 130.81350 * 2 1 3 5 5 C 1.53519 * 83.57177 * 88.75635 * 4 2 1 6 6 N 1.47471 * 87.93260 * 26.02136 * 5 4 2 7 7 C 1.46897 * 110.99967 * 221.29642 * 6 5 4 8 8 C 1.53000 * 109.47253 * 287.60603 * 7 6 5 9 9 C 1.53003 * 109.47248 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.47133 * 59.99781 * 9 8 7 11 11 C 1.50698 * 109.46962 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00322 * 120.00272 * 11 10 9 13 13 C 1.37881 * 119.99931 * 300.00472 * 11 10 9 14 14 N 1.31515 * 120.00362 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99837 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47030 * 59.99704 * 15 13 11 17 17 H 1.48503 * 109.46926 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47001 * 299.99805 * 15 13 11 19 19 C 1.53000 * 109.47232 * 300.00228 * 10 9 8 20 20 C 1.53000 * 109.47018 * 60.00116 * 19 10 9 21 21 H 1.09002 * 109.46612 * 184.87760 * 1 2 3 22 22 H 1.09000 * 109.47608 * 304.87735 * 1 2 3 23 23 H 1.09001 * 109.47133 * 64.88301 * 1 2 3 24 24 H 1.09004 * 114.16724 * 202.39737 * 4 2 1 25 25 H 1.08998 * 114.17728 * 335.11141 * 4 2 1 26 26 H 1.08996 * 113.47589 * 271.25120 * 5 4 2 27 27 H 1.09007 * 113.52776 * 140.79905 * 5 4 2 28 28 H 1.08996 * 109.47205 * 47.61135 * 7 6 5 29 29 H 1.09003 * 109.47334 * 299.99723 * 8 7 6 30 30 H 1.09001 * 109.47228 * 59.99974 * 8 7 6 31 31 H 1.09003 * 109.46532 * 299.99975 * 9 8 7 32 32 H 1.09003 * 109.47100 * 180.02562 * 9 8 7 33 33 H 1.09003 * 109.47253 * 60.00636 * 10 9 8 34 34 H 0.96997 * 120.00386 * 180.02562 * 14 13 11 35 35 H 1.09003 * 109.46813 * 299.99796 * 19 10 9 36 36 H 1.09005 * 109.46759 * 179.97438 * 19 10 9 37 37 H 1.09001 * 109.46415 * 179.97438 * 20 19 10 38 38 H 1.08996 * 109.47219 * 60.00063 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9514 1.0052 0.0000 4 6 2.1429 -0.9199 1.0653 5 6 2.0439 -1.9799 -0.0409 6 7 2.1176 -0.8834 -1.0243 7 6 1.1771 -1.1047 -2.1308 8 6 1.6928 -2.2384 -3.0195 9 6 0.7135 -2.4685 -4.1724 10 6 0.5901 -1.1876 -5.0000 11 6 -0.3748 -1.4140 -6.1351 12 1 -1.2664 -0.8096 -6.2148 13 6 -0.1196 -2.3928 -7.0721 14 7 0.9662 -3.1285 -6.9755 15 14 -1.3154 -2.6730 -8.4796 16 1 -1.4345 -1.4297 -9.2829 17 1 -0.8152 -3.7733 -9.3425 18 1 -2.6468 -3.0384 -7.9327 19 6 0.0745 -0.0539 -4.1114 20 6 1.0538 0.1762 -2.9586 21 1 -0.3632 -1.0240 0.0874 22 1 -0.3634 0.5876 0.8430 23 1 -0.3633 0.4362 -0.9305 24 1 3.1641 -0.6607 1.3448 25 1 1.4941 -1.1061 1.9211 26 1 1.0911 -2.5091 -0.0511 27 1 2.9004 -2.6532 -0.0762 28 1 0.2002 -1.3735 -1.7291 29 1 2.6697 -1.9695 -3.4213 30 1 1.7811 -3.1509 -2.4298 31 1 -0.2636 -2.7372 -3.7709 32 1 1.0807 -3.2765 -4.8052 33 1 1.5672 -0.9189 -5.4015 34 1 1.1460 -3.8169 -7.6348 35 1 -0.9027 -0.3226 -3.7100 36 1 -0.0130 0.8588 -4.7010 37 1 0.6865 0.9842 -2.3258 38 1 2.0308 0.4449 -3.3600 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173330520.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:55 Heat of formation + Delta-G solvation = 14.911326 kcal Electronic energy + Delta-G solvation = -16181.918381 eV Core-core repulsion = 13831.451830 eV Total energy + Delta-G solvation = -2350.466552 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.59684 -36.86579 -32.82356 -30.49506 -30.01413 -29.03232 -26.74388 -24.20868 -23.82185 -21.36466 -20.67747 -18.72237 -18.32992 -16.31015 -15.92468 -15.58400 -14.73318 -14.50659 -13.84830 -13.00836 -12.71828 -12.62122 -12.43005 -12.27681 -11.90002 -11.73604 -11.41506 -11.19604 -11.00456 -10.87478 -10.60376 -10.40620 -10.25041 -10.13853 -10.02653 -9.70533 -9.28848 -8.79794 -8.60333 -8.46813 -8.23799 -5.92447 -3.98738 3.34454 3.39139 3.41691 4.20995 4.47988 4.53080 4.91065 5.27640 5.29212 5.32417 5.36928 5.52692 5.54656 5.68702 5.75437 5.86373 5.93426 6.00799 6.07861 6.18018 6.29980 6.39302 6.44473 6.50672 6.60034 6.71618 6.83741 6.88190 7.01895 7.20817 7.31129 7.47434 7.61648 7.80753 8.09219 8.22196 8.53429 9.05444 9.65483 11.13019 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.057348 B = 0.006613 C = 0.006265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.130107 B = 4233.102130 C = 4468.539023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.024 3.976 3 H 0.087 0.913 4 C -0.145 4.145 5 C -0.001 4.001 6 N -0.466 5.466 7 C 0.051 3.949 8 C -0.105 4.105 9 C -0.107 4.107 10 C 0.049 3.951 11 C -0.513 4.513 12 H 0.052 0.948 13 C 0.061 3.939 14 N -0.891 5.891 15 Si 0.888 3.112 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.278 1.278 19 C -0.107 4.107 20 C -0.105 4.105 21 H 0.057 0.943 22 H 0.059 0.941 23 H 0.073 0.927 24 H 0.088 0.912 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.038 0.962 31 H 0.029 0.971 32 H 0.092 0.908 33 H 0.025 0.975 34 H 0.259 0.741 35 H 0.044 0.956 36 H 0.047 0.953 37 H 0.045 0.955 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.602 3.510 13.571 14.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.086 4.086 3 H 0.105 0.895 4 C -0.183 4.183 5 C -0.130 4.130 6 N -0.188 5.188 7 C -0.057 4.057 8 C -0.143 4.143 9 C -0.145 4.145 10 C 0.031 3.969 11 C -0.551 4.551 12 H 0.071 0.929 13 C -0.140 4.140 14 N -0.530 5.530 15 Si 0.717 3.283 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.204 1.204 19 C -0.145 4.145 20 C -0.143 4.143 21 H 0.076 0.924 22 H 0.078 0.922 23 H 0.092 0.908 24 H 0.107 0.893 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.110 0.890 33 H 0.043 0.957 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.326 3.526 13.101 13.632 hybrid contribution -1.473 -0.479 -0.540 1.640 sum -0.147 3.047 12.562 12.927 Atomic orbital electron populations 1.22152 0.95272 1.02173 1.02858 1.23130 0.93899 0.98879 0.92671 0.89506 1.23201 1.01536 0.97239 0.96301 1.23655 1.01487 0.95465 0.92368 1.69130 1.40523 1.05954 1.03176 1.22291 0.93961 0.97477 0.91995 1.21597 1.00659 0.95031 0.97012 1.21597 0.95674 1.02754 0.94504 1.18641 0.96451 0.89874 0.91958 1.21215 1.07369 1.17551 1.08986 0.92943 1.24970 0.95269 0.96026 0.97739 1.69870 1.25446 1.22004 1.35665 0.86721 0.81464 0.77710 0.82449 1.20360 1.21351 1.20402 1.21615 0.97148 1.00118 0.95629 1.21579 1.00598 0.95127 0.97016 0.92428 0.92164 0.90837 0.89335 0.91175 0.91677 0.90264 0.93302 0.92314 0.94337 0.95172 0.88971 0.95671 0.93067 0.93731 0.93423 0.93679 0.92064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.02 7.99 37.16 0.30 -1.72 16 2 C 0.02 0.31 4.14 -71.44 -0.30 0.01 16 3 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 4 C -0.15 -1.61 8.06 -26.20 -0.21 -1.82 16 5 C 0.00 -0.01 6.59 -7.55 -0.05 -0.06 16 6 N -0.47 -7.29 6.13 -228.53 -1.40 -8.69 16 7 C 0.05 0.90 1.16 -67.71 -0.08 0.82 16 8 C -0.10 -2.13 5.29 -26.73 -0.14 -2.27 16 9 C -0.11 -2.56 4.98 -26.73 -0.13 -2.69 16 10 C 0.05 1.24 2.10 -91.77 -0.19 1.05 16 11 C -0.51 -14.28 8.56 -34.44 -0.29 -14.58 16 12 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 13 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 14 N -0.89 -25.78 11.32 55.43 0.63 -25.16 16 15 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 C -0.11 -2.27 5.14 -26.73 -0.14 -2.41 16 20 C -0.11 -1.94 4.91 -26.73 -0.13 -2.08 16 21 H 0.06 0.71 6.35 -51.93 -0.33 0.38 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.07 0.99 5.56 -51.93 -0.29 0.70 16 24 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.07 0.67 8.11 -51.93 -0.42 0.25 16 26 H 0.07 0.87 6.90 -51.93 -0.36 0.51 16 27 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.05 0.87 5.55 -51.93 -0.29 0.58 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.04 0.73 7.61 -51.93 -0.40 0.33 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 33 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.04 0.74 6.08 -51.93 -0.32 0.42 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 282.24 15.07 4.25 4.25 Total: -1.00 -28.33 282.24 -9.49 -37.81 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -6.48 Total: -0.57 kcal Atomic # 6 Polarization: -22.67 SS G_CDS: -1.46 Total: -24.13 kcal Atomic # 7 Polarization: -33.08 SS G_CDS: -0.77 Total: -33.85 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.33 -9.49 -37.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330520.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.722 kcal (2) G-P(sol) polarization free energy of solvation -28.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds