Wall clock time and date at job start Sun Mar 29 2020 21:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 112.74204 * 2 1 4 4 C 1.53513 * 113.52854 * 130.81350 * 2 1 3 5 5 C 1.53519 * 83.57177 * 88.75635 * 4 2 1 6 6 N 1.47471 * 87.93260 * 26.02136 * 5 4 2 7 7 C 1.46897 * 110.99967 * 221.29642 * 6 5 4 8 8 C 1.53000 * 109.47253 * 287.60603 * 7 6 5 9 9 C 1.53003 * 109.47248 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.47133 * 59.99781 * 9 8 7 11 11 C 1.50698 * 109.46962 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00322 * 120.00272 * 11 10 9 13 13 C 1.37881 * 119.99931 * 300.00472 * 11 10 9 14 14 N 1.31515 * 120.00362 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99837 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47030 * 59.99704 * 15 13 11 17 17 H 1.48503 * 109.46926 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47001 * 299.99805 * 15 13 11 19 19 C 1.53000 * 109.47232 * 300.00228 * 10 9 8 20 20 C 1.53000 * 109.47018 * 60.00116 * 19 10 9 21 21 H 1.09002 * 109.46612 * 184.87760 * 1 2 3 22 22 H 1.09000 * 109.47608 * 304.87735 * 1 2 3 23 23 H 1.09001 * 109.47133 * 64.88301 * 1 2 3 24 24 H 1.09004 * 114.16724 * 202.39737 * 4 2 1 25 25 H 1.08998 * 114.17728 * 335.11141 * 4 2 1 26 26 H 1.08996 * 113.47589 * 271.25120 * 5 4 2 27 27 H 1.09007 * 113.52776 * 140.79905 * 5 4 2 28 28 H 1.08996 * 109.47205 * 47.61135 * 7 6 5 29 29 H 1.09003 * 109.47334 * 299.99723 * 8 7 6 30 30 H 1.09001 * 109.47228 * 59.99974 * 8 7 6 31 31 H 1.09003 * 109.46532 * 299.99975 * 9 8 7 32 32 H 1.09003 * 109.47100 * 180.02562 * 9 8 7 33 33 H 1.09003 * 109.47253 * 60.00636 * 10 9 8 34 34 H 0.96997 * 120.00386 * 180.02562 * 14 13 11 35 35 H 1.09003 * 109.46813 * 299.99796 * 19 10 9 36 36 H 1.09005 * 109.46759 * 179.97438 * 19 10 9 37 37 H 1.09001 * 109.46415 * 179.97438 * 20 19 10 38 38 H 1.08996 * 109.47219 * 60.00063 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9514 1.0052 0.0000 4 6 2.1429 -0.9199 1.0653 5 6 2.0439 -1.9799 -0.0409 6 7 2.1176 -0.8834 -1.0243 7 6 1.1771 -1.1047 -2.1308 8 6 1.6928 -2.2384 -3.0195 9 6 0.7135 -2.4685 -4.1724 10 6 0.5901 -1.1876 -5.0000 11 6 -0.3748 -1.4140 -6.1351 12 1 -1.2664 -0.8096 -6.2148 13 6 -0.1196 -2.3928 -7.0721 14 7 0.9662 -3.1285 -6.9755 15 14 -1.3154 -2.6730 -8.4796 16 1 -1.4345 -1.4297 -9.2829 17 1 -0.8152 -3.7733 -9.3425 18 1 -2.6468 -3.0384 -7.9327 19 6 0.0745 -0.0539 -4.1114 20 6 1.0538 0.1762 -2.9586 21 1 -0.3632 -1.0240 0.0874 22 1 -0.3634 0.5876 0.8430 23 1 -0.3633 0.4362 -0.9305 24 1 3.1641 -0.6607 1.3448 25 1 1.4941 -1.1061 1.9211 26 1 1.0911 -2.5091 -0.0511 27 1 2.9004 -2.6532 -0.0762 28 1 0.2002 -1.3735 -1.7291 29 1 2.6697 -1.9695 -3.4213 30 1 1.7811 -3.1509 -2.4298 31 1 -0.2636 -2.7372 -3.7709 32 1 1.0807 -3.2765 -4.8052 33 1 1.5672 -0.9189 -5.4015 34 1 1.1460 -3.8169 -7.6348 35 1 -0.9027 -0.3226 -3.7100 36 1 -0.0130 0.8588 -4.7010 37 1 0.6865 0.9842 -2.3258 38 1 2.0308 0.4449 -3.3600 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173330520.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:54 Heat of formation + Delta-G solvation = -2.411339 kcal Electronic energy + Delta-G solvation = -16182.669548 eV Core-core repulsion = 13831.451830 eV Total energy + Delta-G solvation = -2351.217719 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.75852 -38.54766 -34.79867 -32.07245 -31.60547 -30.27658 -28.30759 -25.84013 -25.05636 -23.05632 -22.26575 -20.45794 -19.42229 -18.40787 -17.03166 -16.84863 -16.54071 -15.91620 -15.35912 -14.73267 -14.55131 -14.20028 -13.51990 -13.40260 -13.29842 -13.19520 -12.96195 -12.85005 -12.64204 -12.45066 -12.27509 -11.97044 -11.82668 -11.66956 -11.48993 -11.27787 -11.12385 -10.67440 -10.47805 -10.34947 -9.64076 -8.06864 -6.21748 1.40814 1.42249 1.49952 2.43534 3.09060 3.19383 3.55758 3.88855 3.93274 4.03941 4.27168 4.35655 4.43218 4.46813 4.55988 4.67495 4.73117 4.73321 4.82513 4.87938 4.91000 4.98816 5.02328 5.10734 5.11520 5.19621 5.32209 5.39781 5.44581 5.47402 5.55561 5.64426 5.69543 6.02737 6.18037 6.27789 6.41137 6.91086 7.46332 8.96973 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.057348 B = 0.006613 C = 0.006265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.130107 B = 4233.102130 C = 4468.539023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.020 3.980 3 H 0.091 0.909 4 C -0.125 4.125 5 C -0.008 4.008 6 N -0.487 5.487 7 C 0.063 3.937 8 C -0.096 4.096 9 C -0.097 4.097 10 C 0.045 3.955 11 C -0.536 4.536 12 H 0.052 0.948 13 C 0.011 3.989 14 N -0.918 5.918 15 Si 0.953 3.047 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.270 1.270 19 C -0.099 4.099 20 C -0.097 4.097 21 H 0.054 0.946 22 H 0.084 0.916 23 H 0.058 0.942 24 H 0.097 0.903 25 H 0.093 0.907 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.054 0.946 29 H 0.039 0.961 30 H 0.050 0.950 31 H 0.026 0.974 32 H 0.057 0.943 33 H -0.012 1.012 34 H 0.260 0.740 35 H 0.049 0.951 36 H 0.046 0.954 37 H 0.072 0.928 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.246 4.142 15.312 15.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.089 4.089 3 H 0.109 0.891 4 C -0.163 4.163 5 C -0.137 4.137 6 N -0.209 5.209 7 C -0.046 4.046 8 C -0.134 4.134 9 C -0.136 4.136 10 C 0.027 3.973 11 C -0.574 4.574 12 H 0.070 0.930 13 C -0.188 4.188 14 N -0.558 5.558 15 Si 0.779 3.221 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.195 1.195 19 C -0.137 4.137 20 C -0.134 4.134 21 H 0.073 0.927 22 H 0.103 0.897 23 H 0.077 0.923 24 H 0.115 0.885 25 H 0.111 0.889 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.045 0.955 32 H 0.076 0.924 33 H 0.006 0.994 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.091 0.909 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.476 4.169 14.855 15.436 hybrid contribution -1.174 -0.676 -1.075 1.730 sum -0.698 3.492 13.780 14.232 Atomic orbital electron populations 1.22122 0.94556 1.02322 1.03163 1.23270 0.94512 0.98986 0.92126 0.89051 1.23143 1.02383 0.94785 0.95970 1.23761 1.01562 0.95624 0.92722 1.69109 1.40249 1.07969 1.03588 1.22043 0.94566 0.95608 0.92336 1.21427 0.98601 0.97019 0.96333 1.21373 0.96199 1.00919 0.95126 1.18619 0.94230 0.91990 0.92484 1.21610 1.07833 1.17759 1.10218 0.93007 1.25775 0.96929 0.95768 1.00289 1.70027 1.26998 1.22351 1.36432 0.85687 0.79406 0.77732 0.79285 1.19695 1.20973 1.19545 1.21473 0.97913 0.98348 0.95980 1.21475 0.99023 0.96569 0.96378 0.92730 0.89724 0.92279 0.88478 0.88875 0.91590 0.90335 0.92835 0.94173 0.93082 0.95469 0.92430 0.99395 0.93116 0.93247 0.93500 0.90936 0.93482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.45 7.99 71.98 0.58 -2.88 16 2 C 0.02 0.46 4.14 42.19 0.17 0.63 16 3 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 4 C -0.13 -2.33 8.06 30.94 0.25 -2.08 16 5 C -0.01 -0.19 6.59 83.58 0.55 0.36 16 6 N -0.49 -14.34 6.13 -876.93 -5.37 -19.71 16 7 C 0.06 2.17 1.16 44.92 0.05 2.22 16 8 C -0.10 -3.93 5.29 30.60 0.16 -3.77 16 9 C -0.10 -4.81 4.98 30.60 0.15 -4.66 16 10 C 0.05 2.36 2.10 -11.54 -0.02 2.33 16 11 C -0.54 -30.45 8.56 25.60 0.22 -30.23 16 12 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 13 C 0.01 0.61 5.30 84.66 0.45 1.06 16 14 N -0.92 -54.70 11.32 21.45 0.24 -54.45 16 15 Si 0.95 44.47 29.54 68.60 2.03 46.50 16 16 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 17 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 18 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 19 C -0.10 -4.21 5.14 30.59 0.16 -4.05 16 20 C -0.10 -3.49 4.91 30.60 0.15 -3.34 16 21 H 0.05 1.19 6.35 -2.39 -0.02 1.17 16 22 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.06 1.42 5.56 -2.39 -0.01 1.41 16 24 H 0.10 1.67 8.14 -2.39 -0.02 1.66 16 25 H 0.09 1.36 8.11 -2.39 -0.02 1.34 16 26 H 0.07 1.61 6.90 -2.39 -0.02 1.59 16 27 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 28 H 0.05 1.81 5.55 -2.39 -0.01 1.80 16 29 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.05 1.93 7.61 -2.39 -0.02 1.91 16 31 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.06 3.23 6.07 -2.39 -0.01 3.21 16 33 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 34 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 35 H 0.05 2.03 8.14 -2.39 -0.02 2.02 16 36 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 37 H 0.07 2.23 6.08 -2.39 -0.01 2.22 16 38 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -61.82 282.24 0.77 -61.05 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: 1.01 Total: 11.02 kcal Atomic # 6 Polarization: -47.27 SS G_CDS: 2.87 Total: -44.40 kcal Atomic # 7 Polarization: -69.04 SS G_CDS: -5.13 Total: -74.17 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -61.82 0.77 -61.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330520.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.638 kcal (2) G-P(sol) polarization free energy of solvation -61.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds