Wall clock time and date at job start Sun Mar 29 2020 21:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31583 * 1 3 3 Si 1.86798 * 119.99909 * 2 1 4 4 H 1.48499 * 109.47351 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47224 * 299.99853 * 3 2 1 6 6 H 1.48505 * 109.47209 * 59.99738 * 3 2 1 7 7 C 1.38639 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99669 * 180.02562 * 7 2 1 9 9 O 1.34925 * 119.99844 * 0.02562 * 7 2 1 10 10 C 1.42935 * 116.99832 * 179.97438 * 9 7 2 11 11 H 1.08784 * 109.56286 * 330.38718 * 10 9 7 12 12 C 1.56381 * 109.48836 * 209.78153 * 10 9 7 13 13 H 1.09310 * 116.11092 * 42.63155 * 12 10 9 14 14 C 1.58855 * 107.96200 * 175.54470 * 12 10 9 15 15 C 1.48476 * 96.49271 * 47.73428 * 14 12 10 16 16 H 1.11797 * 88.12860 * 301.58618 * 15 14 12 17 17 C 1.47551 * 141.77319 * 238.55390 * 15 14 12 18 18 O 1.18969 * 133.71285 * 275.03270 * 17 15 14 19 19 O 1.39010 * 92.52379 * 95.04712 * 17 15 14 20 20 C 1.48809 * 113.15302 * 26.66007 * 19 17 15 21 21 H 1.10092 * 114.07250 * 136.13210 * 20 19 17 22 22 C 1.58563 * 110.90761 * 31.84321 * 15 14 12 23 23 H 1.09066 * 121.13127 * 137.05151 * 22 15 14 24 24 C 1.57319 * 97.99066 * 277.69973 * 12 10 9 25 25 H 0.96998 * 120.00083 * 0.02562 * 1 2 3 26 26 H 1.09191 * 112.19844 * 164.63244 * 14 12 10 27 27 H 1.09173 * 112.20695 * 290.81861 * 14 12 10 28 28 H 1.09004 * 111.47766 * 64.33618 * 24 12 10 29 29 H 1.09066 * 111.34182 * 189.11356 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.7098 1.3465 0.0006 5 1 1.8911 2.3964 -1.2125 6 1 1.8910 2.3965 1.2125 7 6 2.0090 -1.2006 0.0005 8 1 3.0890 -1.2006 0.0010 9 8 1.3344 -2.3691 0.0005 10 6 2.1129 -3.5679 0.0005 11 1 3.0586 -3.3880 -0.5060 12 6 1.3239 -4.7023 -0.7317 13 1 0.8120 -4.4144 -1.6536 14 6 2.2651 -5.9794 -0.8133 15 6 2.6921 -5.9645 0.6086 16 1 3.0889 -4.9329 0.4405 17 6 3.8970 -5.8824 1.4563 18 8 4.6773 -6.6865 1.8560 19 8 3.7709 -4.5064 1.6088 20 6 2.3678 -4.0292 1.4757 21 1 2.0713 -3.2889 2.2347 22 6 1.5405 -5.3971 1.5393 23 1 1.3016 -5.8699 2.4927 24 6 0.4126 -5.1465 0.4713 25 1 -0.4850 0.8400 -0.0004 26 1 1.7097 -6.8858 -1.0628 27 1 3.1059 -5.8296 -1.4933 28 1 -0.2647 -4.3482 0.7749 29 1 -0.1351 -6.0603 0.2380 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224378871.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:25 Heat of formation + Delta-G solvation = 84.261563 kcal Electronic energy + Delta-G solvation = -15925.338943 eV Core-core repulsion = 13208.494792 eV Total energy + Delta-G solvation = -2716.844151 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.64493 -38.70794 -36.54697 -35.40957 -31.82458 -29.34468 -28.35428 -27.11981 -24.88865 -23.74965 -20.10890 -19.57583 -19.32917 -17.82002 -17.50838 -16.22145 -15.88659 -15.32695 -14.57796 -14.35632 -13.86988 -13.68995 -12.92365 -12.58276 -12.33681 -11.78794 -11.61094 -11.49874 -11.04809 -11.02882 -10.83619 -10.67650 -10.40004 -10.07214 -9.71619 -9.50709 -9.37283 -8.39268 -8.19356 -6.13130 -3.79272 1.95896 2.75740 3.21990 3.26222 3.30477 3.45382 4.13529 4.24820 4.34507 4.66129 4.95287 5.04574 5.12978 5.26853 5.33386 5.43465 5.62813 5.79184 5.86617 5.98710 6.06476 6.20866 6.24835 6.32764 6.41395 6.53532 6.62460 7.33708 7.59224 8.24502 9.30226 9.87734 11.06350 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.040781 B = 0.008646 C = 0.007748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.437145 B = 3237.676157 C = 3612.809097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.030 3.970 3 Si 0.926 3.074 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.375 4.375 8 H 0.068 0.932 9 O -0.264 6.264 10 C 0.077 3.923 11 H 0.057 0.943 12 C -0.101 4.101 13 H 0.122 0.878 14 C -0.029 4.029 15 C -0.415 4.415 16 H 0.174 0.826 17 C 0.572 3.428 18 O -0.416 6.416 19 O -0.409 6.409 20 C 0.069 3.931 21 H 0.142 0.858 22 C -0.101 4.101 23 H 0.128 0.872 24 C -0.108 4.108 25 H 0.260 0.740 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.558 -8.862 -0.022 8.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.169 4.169 3 Si 0.753 3.247 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.454 4.454 8 H 0.085 0.915 9 O -0.179 6.179 10 C 0.016 3.984 11 H 0.075 0.925 12 C -0.119 4.119 13 H 0.140 0.860 14 C -0.066 4.066 15 C -0.433 4.433 16 H 0.188 0.812 17 C 0.411 3.589 18 O -0.292 6.292 19 O -0.333 6.333 20 C 0.016 3.984 21 H 0.160 0.840 22 C -0.119 4.119 23 H 0.146 0.854 24 C -0.145 4.145 25 H 0.070 0.930 26 H 0.094 0.906 27 H 0.091 0.909 28 H 0.109 0.891 29 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.795 -8.882 0.213 9.064 hybrid contribution 0.787 0.932 0.115 1.225 sum 2.582 -7.949 0.329 8.365 Atomic orbital electron populations 1.70018 1.05411 1.26244 1.50837 1.24958 0.95685 0.97795 0.98488 0.85881 0.78982 0.81994 0.77878 1.19766 1.20704 1.20694 1.20998 0.90458 0.82283 1.51627 0.91478 1.85741 1.30658 1.09751 1.91712 1.23633 0.95354 0.89113 0.90307 0.92524 1.24558 0.96723 0.92015 0.98593 0.86010 1.21307 0.98634 0.97406 0.89298 1.25690 0.97208 1.22701 0.97703 0.81155 1.20664 0.82449 0.79924 0.75818 1.90168 1.43826 1.43895 1.51358 1.88231 1.34085 1.23830 1.87195 1.27835 0.72709 0.96245 1.01574 0.84016 1.25621 0.94266 0.93759 0.98232 0.85405 1.23431 0.96165 1.01519 0.93388 0.92980 0.90607 0.90912 0.89089 0.90829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.96 13.67 55.48 0.76 -25.20 15 2 C 0.03 0.84 5.49 -17.51 -0.10 0.74 15 3 Si 0.93 21.13 29.55 -169.99 -5.02 16.10 15 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 15 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 7 C -0.37 -10.25 9.80 30.88 0.30 -9.95 15 8 H 0.07 1.77 7.64 -52.49 -0.40 1.37 15 9 O -0.26 -6.77 9.29 -16.49 -0.15 -6.92 15 10 C 0.08 1.53 2.17 -22.95 -0.05 1.48 15 11 H 0.06 1.17 7.47 -52.05 -0.39 0.78 15 12 C -0.10 -1.61 5.05 -83.20 -0.42 -2.03 15 13 H 0.12 1.91 8.17 -51.75 -0.42 1.49 15 14 C -0.03 -0.40 6.66 -25.69 -0.17 -0.57 15 15 C -0.42 -6.52 5.74 -92.38 -0.53 -7.05 15 16 H 0.17 2.97 1.05 -175.27 -0.18 2.79 15 17 C 0.57 10.06 9.16 34.53 0.32 10.38 15 18 O -0.42 -7.85 17.87 -16.04 -0.29 -8.14 15 19 O -0.41 -7.68 10.38 -53.41 -0.55 -8.23 15 20 C 0.07 1.25 5.05 -20.83 -0.11 1.15 15 21 H 0.14 2.66 8.21 -51.31 -0.42 2.24 15 22 C -0.10 -1.52 6.13 -81.24 -0.50 -2.01 15 23 H 0.13 1.66 8.15 -51.89 -0.42 1.24 15 24 C -0.11 -1.61 6.28 -22.02 -0.14 -1.75 15 25 H 0.26 7.15 8.31 -40.82 -0.34 6.81 15 26 H 0.08 0.89 8.16 -51.82 -0.42 0.47 15 27 H 0.07 0.94 8.16 -51.83 -0.42 0.51 15 28 H 0.09 1.53 8.02 -51.93 -0.42 1.12 15 29 H 0.07 0.92 8.14 -51.89 -0.42 0.50 15 LS Contribution 245.09 15.07 3.69 3.69 Total: -1.00 -30.48 245.09 -6.01 -36.50 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -3.06 Total: 1.82 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -1.39 Total: -9.61 kcal Atomic # 7 Polarization: -25.96 SS G_CDS: 0.76 Total: -25.20 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.99 Total: -23.29 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -30.48 -6.01 -36.50 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224378871.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.758 kcal (2) G-P(sol) polarization free energy of solvation -30.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds