Wall clock time and date at job start Sun Mar 29 2020 21:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31583 * 1 3 3 Si 1.86798 * 119.99909 * 2 1 4 4 H 1.48499 * 109.47351 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47224 * 299.99853 * 3 2 1 6 6 H 1.48505 * 109.47209 * 59.99738 * 3 2 1 7 7 C 1.38639 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99669 * 180.02562 * 7 2 1 9 9 O 1.34925 * 119.99844 * 0.02562 * 7 2 1 10 10 C 1.42935 * 116.99832 * 179.97438 * 9 7 2 11 11 H 1.08784 * 109.56286 * 330.38718 * 10 9 7 12 12 C 1.56381 * 109.48836 * 209.78153 * 10 9 7 13 13 H 1.09310 * 116.11092 * 42.63155 * 12 10 9 14 14 C 1.58855 * 107.96200 * 175.54470 * 12 10 9 15 15 C 1.48476 * 96.49271 * 47.73428 * 14 12 10 16 16 H 1.11797 * 88.12860 * 301.58618 * 15 14 12 17 17 C 1.47551 * 141.77319 * 238.55390 * 15 14 12 18 18 O 1.18969 * 133.71285 * 275.03270 * 17 15 14 19 19 O 1.39010 * 92.52379 * 95.04712 * 17 15 14 20 20 C 1.48809 * 113.15302 * 26.66007 * 19 17 15 21 21 H 1.10092 * 114.07250 * 136.13210 * 20 19 17 22 22 C 1.58563 * 110.90761 * 31.84321 * 15 14 12 23 23 H 1.09066 * 121.13127 * 137.05151 * 22 15 14 24 24 C 1.57319 * 97.99066 * 277.69973 * 12 10 9 25 25 H 0.96998 * 120.00083 * 0.02562 * 1 2 3 26 26 H 1.09191 * 112.19844 * 164.63244 * 14 12 10 27 27 H 1.09173 * 112.20695 * 290.81861 * 14 12 10 28 28 H 1.09004 * 111.47766 * 64.33618 * 24 12 10 29 29 H 1.09066 * 111.34182 * 189.11356 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.7098 1.3465 0.0006 5 1 1.8911 2.3964 -1.2125 6 1 1.8910 2.3965 1.2125 7 6 2.0090 -1.2006 0.0005 8 1 3.0890 -1.2006 0.0010 9 8 1.3344 -2.3691 0.0005 10 6 2.1129 -3.5679 0.0005 11 1 3.0586 -3.3880 -0.5060 12 6 1.3239 -4.7023 -0.7317 13 1 0.8120 -4.4144 -1.6536 14 6 2.2651 -5.9794 -0.8133 15 6 2.6921 -5.9645 0.6086 16 1 3.0889 -4.9329 0.4405 17 6 3.8970 -5.8824 1.4563 18 8 4.6773 -6.6865 1.8560 19 8 3.7709 -4.5064 1.6088 20 6 2.3678 -4.0292 1.4757 21 1 2.0713 -3.2889 2.2347 22 6 1.5405 -5.3971 1.5393 23 1 1.3016 -5.8699 2.4927 24 6 0.4126 -5.1465 0.4713 25 1 -0.4850 0.8400 -0.0004 26 1 1.7097 -6.8858 -1.0628 27 1 3.1059 -5.8296 -1.4933 28 1 -0.2647 -4.3482 0.7749 29 1 -0.1351 -6.0603 0.2380 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224378871.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:25 Heat of formation + Delta-G solvation = 64.762483 kcal Electronic energy + Delta-G solvation = -15926.184486 eV Core-core repulsion = 13208.494792 eV Total energy + Delta-G solvation = -2717.689694 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -45.01839 -40.15804 -38.24498 -36.96490 -33.87694 -30.64472 -29.72152 -28.56919 -26.78654 -25.28372 -21.38054 -21.03498 -20.69352 -19.78994 -18.99292 -17.73226 -17.31991 -16.89317 -16.28441 -15.81084 -15.44594 -15.22651 -14.41522 -14.05685 -13.90782 -13.45494 -13.32414 -12.92014 -12.71307 -12.36322 -12.23085 -12.09708 -11.94082 -11.72182 -11.37814 -11.18488 -10.86144 -10.21670 -9.70073 -8.22862 -5.92767 0.55444 1.36214 1.40192 1.43097 1.53695 2.03492 2.31985 2.91368 3.00632 3.08303 3.34469 3.55198 3.72001 3.88131 4.07158 4.10021 4.14002 4.41403 4.61628 4.69324 4.84357 4.97696 4.99307 5.08684 5.13283 5.15684 5.22246 5.29964 6.16006 6.19425 7.20748 7.91232 8.99810 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.040781 B = 0.008646 C = 0.007748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.437145 B = 3237.676157 C = 3612.809097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.027 4.027 3 Si 0.996 3.004 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.383 4.383 8 H 0.065 0.935 9 O -0.296 6.296 10 C 0.067 3.933 11 H 0.040 0.960 12 C -0.100 4.100 13 H 0.125 0.875 14 C -0.016 4.016 15 C -0.392 4.392 16 H 0.151 0.849 17 C 0.573 3.427 18 O -0.431 6.431 19 O -0.428 6.428 20 C 0.062 3.938 21 H 0.126 0.874 22 C -0.080 4.080 23 H 0.156 0.844 24 C -0.101 4.101 25 H 0.263 0.737 26 H 0.112 0.888 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.560 -10.125 -0.327 10.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.222 4.222 3 Si 0.819 3.181 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.462 4.462 8 H 0.083 0.917 9 O -0.211 6.211 10 C 0.007 3.993 11 H 0.058 0.942 12 C -0.119 4.119 13 H 0.142 0.858 14 C -0.053 4.053 15 C -0.410 4.410 16 H 0.166 0.834 17 C 0.414 3.586 18 O -0.309 6.309 19 O -0.352 6.352 20 C 0.010 3.990 21 H 0.144 0.856 22 C -0.098 4.098 23 H 0.174 0.826 24 C -0.138 4.138 25 H 0.072 0.928 26 H 0.130 0.870 27 H 0.100 0.900 28 H 0.086 0.914 29 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.812 -10.167 -0.095 10.328 hybrid contribution 0.847 1.248 0.226 1.525 sum 2.659 -8.919 0.132 9.308 Atomic orbital electron populations 1.70148 1.07141 1.27327 1.52505 1.26014 0.96644 1.01395 0.98166 0.84828 0.77909 0.77210 0.78150 1.18880 1.19897 1.20045 1.21311 0.90537 0.83476 1.50889 0.91692 1.85664 1.32412 1.10798 1.92250 1.23996 0.94896 0.88503 0.91879 0.94246 1.24598 0.97111 0.91284 0.98860 0.85759 1.21355 0.98817 0.97211 0.87915 1.25727 0.96287 1.20534 0.98432 0.83388 1.20809 0.82761 0.79300 0.75768 1.90160 1.44554 1.44083 1.52057 1.88219 1.34503 1.25015 1.87465 1.27630 0.73427 0.98152 0.99835 0.85624 1.25790 0.93571 0.90978 0.99503 0.82613 1.23420 0.95622 1.02360 0.92433 0.92829 0.87007 0.89979 0.91434 0.87014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.62 13.67 21.61 0.30 -55.33 15 2 C -0.03 -1.53 5.49 84.83 0.47 -1.07 15 3 Si 1.00 43.70 29.55 68.60 2.03 45.73 15 4 H -0.26 -11.09 7.11 99.48 0.71 -10.38 15 5 H -0.27 -11.58 7.11 99.48 0.71 -10.88 15 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 15 7 C -0.38 -21.50 9.80 67.92 0.67 -20.84 15 8 H 0.07 3.54 7.64 -2.91 -0.02 3.52 15 9 O -0.30 -15.62 9.29 -81.94 -0.76 -16.38 15 10 C 0.07 2.70 2.17 33.04 0.07 2.77 15 11 H 0.04 1.68 7.47 -2.50 -0.02 1.66 15 12 C -0.10 -3.04 5.05 -5.99 -0.03 -3.07 15 13 H 0.12 3.73 8.17 -2.22 -0.02 3.71 15 14 C -0.02 -0.38 6.66 31.27 0.21 -0.17 15 15 C -0.39 -11.26 5.74 -11.93 -0.07 -11.33 15 16 H 0.15 5.02 1.05 -232.66 -0.24 4.77 15 17 C 0.57 19.37 9.16 70.28 0.64 20.02 15 18 O -0.43 -15.70 17.87 26.00 0.46 -15.23 15 19 O -0.43 -16.04 10.38 -107.70 -1.12 -17.16 15 20 C 0.06 2.26 5.05 34.42 0.17 2.44 15 21 H 0.13 4.92 8.21 -1.80 -0.01 4.90 15 22 C -0.08 -2.23 6.13 -4.72 -0.03 -2.26 15 23 H 0.16 3.50 8.15 -2.35 -0.02 3.48 15 24 C -0.10 -2.76 6.28 33.65 0.21 -2.55 15 25 H 0.26 14.69 8.31 -92.71 -0.77 13.92 15 26 H 0.11 2.01 8.16 -2.29 -0.02 1.99 15 27 H 0.08 1.86 8.16 -2.30 -0.02 1.84 15 28 H 0.07 2.21 8.02 -2.38 -0.02 2.19 15 29 H 0.11 2.27 8.14 -2.35 -0.02 2.25 15 Total: -1.00 -66.62 245.09 4.16 -62.46 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 0.94 Total: 11.98 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: 2.31 Total: -16.07 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: 0.30 Total: -55.33 kcal Atomic # 8 Polarization: -47.35 SS G_CDS: -1.41 Total: -48.77 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -66.62 4.16 -62.46 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224378871.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.220 kcal (2) G-P(sol) polarization free energy of solvation -66.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds