Wall clock time and date at job start Sun Mar 29 2020 21:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86808 * 119.99619 * 2 1 4 4 H 1.48501 * 109.46994 * 239.99951 * 3 2 1 5 5 H 1.48498 * 109.47201 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46953 * 120.00198 * 3 2 1 7 7 C 1.38638 * 120.00520 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99875 * 180.02562 * 7 2 1 9 9 O 1.34922 * 119.99430 * 359.97438 * 7 2 1 10 10 C 1.43385 * 116.99764 * 180.02562 * 9 7 2 11 11 H 1.10058 * 110.32128 * 325.60748 * 10 9 7 12 12 C 1.59892 * 113.09949 * 198.85387 * 10 9 7 13 13 H 1.09858 * 117.79460 * 67.18694 * 12 10 9 14 14 C 1.57896 * 106.08697 * 200.47242 * 12 10 9 15 15 C 1.56782 * 109.68645 * 66.14215 * 14 12 10 16 16 H 1.10576 * 115.18583 * 126.86433 * 15 14 12 17 17 C 1.55216 * 109.37098 * 258.74548 * 15 14 12 18 18 O 1.21391 * 125.68712 * 272.42070 * 17 15 14 19 19 O 1.40149 * 110.17570 * 92.47732 * 17 15 14 20 20 C 1.40667 * 90.91317 * 327.98889 * 19 17 15 21 21 H 1.07902 * 80.91796 * 327.93042 * 20 19 17 22 22 C 1.59100 * 100.92405 * 67.48620 * 20 19 17 23 23 H 1.10194 * 122.05858 * 50.38503 * 22 20 19 24 24 C 1.56835 * 101.80198 * 186.25710 * 22 20 19 25 25 H 0.96997 * 120.00360 * 0.02562 * 1 2 3 26 26 H 1.09393 * 108.83204 * 185.45154 * 14 12 10 27 27 H 1.08700 * 110.01420 * 304.29054 * 14 12 10 28 28 H 1.09213 * 111.71518 * 147.66852 * 24 22 20 29 29 H 1.08970 * 112.05748 * 272.86646 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6179 0.0000 4 1 3.1034 1.6966 -1.2125 5 1 1.2846 2.7465 -0.0006 6 1 3.1034 1.6965 1.2124 7 6 2.0091 -1.2006 0.0005 8 1 3.0890 -1.2005 0.0010 9 8 1.3344 -2.3690 0.0016 10 6 2.1154 -3.5715 0.0027 11 1 3.0378 -3.4287 -0.5805 12 6 1.2898 -4.8561 -0.4715 13 1 0.9620 -4.8963 -1.5192 14 6 2.0747 -6.1094 0.0820 15 6 2.0174 -6.1189 1.6487 16 1 1.6523 -7.0598 2.1005 17 6 3.3598 -5.5850 2.2163 18 8 4.3477 -6.2526 2.4441 19 8 3.2764 -4.2034 2.4357 20 6 2.3937 -4.0614 1.3497 21 1 2.9848 -4.8858 0.9821 22 6 1.1128 -4.8279 1.9002 23 1 0.6830 -4.6117 2.8915 24 6 0.1738 -4.8266 0.6440 25 1 -0.4850 0.8400 -0.0004 26 1 1.6016 -7.0190 -0.2994 27 1 3.1054 -6.0848 -0.2626 28 1 -0.4523 -5.7207 0.6066 29 1 -0.4333 -3.9234 0.5878 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224378873.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:27 Heat of formation + Delta-G solvation = 78.190001 kcal Electronic energy + Delta-G solvation = -15961.478294 eV Core-core repulsion = 13244.370861 eV Total energy + Delta-G solvation = -2717.107433 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.82484 -38.19613 -36.64253 -35.51411 -31.79491 -29.41400 -28.10515 -27.51241 -24.56501 -22.75312 -20.57019 -20.03734 -19.39845 -17.73097 -17.12163 -16.32869 -15.72182 -15.29192 -15.03500 -14.22761 -14.02489 -13.34374 -12.93445 -12.33439 -12.06197 -11.74239 -11.48561 -11.44186 -11.19296 -10.87873 -10.73668 -10.53839 -10.45126 -10.19583 -9.97125 -9.61727 -9.26646 -8.78055 -8.08239 -6.05798 -3.70042 1.93007 2.72918 3.29097 3.31779 3.33847 3.70714 4.07824 4.15373 4.43619 4.58590 4.86650 4.92711 5.07677 5.16589 5.27060 5.35103 5.44712 5.71616 5.74724 5.87085 5.93730 6.13684 6.17991 6.23835 6.33317 6.68975 6.76567 7.39570 7.41112 8.31966 9.37114 9.94193 11.13734 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.040518 B = 0.008911 C = 0.007965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.879118 B = 3141.335170 C = 3514.750162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.031 3.969 3 Si 0.926 3.074 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.276 1.276 7 C -0.367 4.367 8 H 0.065 0.935 9 O -0.260 6.260 10 C 0.150 3.850 11 H 0.062 0.938 12 C -0.090 4.090 13 H 0.132 0.868 14 C -0.113 4.113 15 C -0.136 4.136 16 H 0.126 0.874 17 C 0.460 3.540 18 O -0.459 6.459 19 O -0.308 6.308 20 C -0.005 4.005 21 H 0.010 0.990 22 C -0.108 4.108 23 H 0.138 0.862 24 C -0.110 4.110 25 H 0.261 0.739 26 H 0.082 0.918 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.000 -10.629 -0.326 10.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.169 4.169 3 Si 0.753 3.247 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.202 1.202 7 C -0.446 4.446 8 H 0.082 0.918 9 O -0.174 6.174 10 C 0.089 3.911 11 H 0.080 0.920 12 C -0.108 4.108 13 H 0.149 0.851 14 C -0.150 4.150 15 C -0.156 4.156 16 H 0.143 0.857 17 C 0.302 3.698 18 O -0.341 6.341 19 O -0.227 6.227 20 C -0.061 4.061 21 H 0.027 0.973 22 C -0.126 4.126 23 H 0.155 0.845 24 C -0.147 4.147 25 H 0.071 0.929 26 H 0.100 0.900 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.298 -10.743 -0.060 10.747 hybrid contribution 1.112 0.748 0.188 1.353 sum 1.410 -9.995 0.127 10.095 Atomic orbital electron populations 1.69989 1.05378 1.26375 1.50807 1.24925 0.95688 0.97688 0.98550 0.86024 0.78628 0.81448 0.78613 1.20252 1.20741 1.20185 1.20820 0.90372 0.82188 1.51221 0.91764 1.85732 1.30934 1.09651 1.91094 1.22513 0.93903 0.89140 0.85545 0.92024 1.25084 0.96321 0.89802 0.99561 0.85064 1.23279 1.01067 0.99413 0.91287 1.25883 0.91499 1.01327 0.96898 0.85650 1.26466 0.89478 0.82132 0.71678 1.90753 1.35484 1.60876 1.46957 1.88984 1.64110 1.21769 1.47873 1.24746 0.87614 1.04755 0.89025 0.97271 1.26105 0.94218 0.91940 1.00347 0.84471 1.23452 0.96478 1.03166 0.91634 0.92945 0.89988 0.91661 0.91271 0.88027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.34 13.67 55.48 0.76 -25.58 15 2 C 0.03 0.87 5.49 -17.51 -0.10 0.78 15 3 Si 0.93 21.62 29.55 -169.99 -5.02 16.59 15 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 7 C -0.37 -10.35 9.82 30.88 0.30 -10.05 15 8 H 0.06 1.75 7.72 -52.49 -0.40 1.34 15 9 O -0.26 -6.83 8.73 -16.49 -0.14 -6.98 15 10 C 0.15 3.06 3.29 -26.16 -0.09 2.98 15 11 H 0.06 1.24 8.03 -51.33 -0.41 0.83 15 12 C -0.09 -1.34 5.60 -81.42 -0.46 -1.79 15 13 H 0.13 1.70 8.21 -51.44 -0.42 1.27 15 14 C -0.11 -1.44 5.28 -22.00 -0.12 -1.55 15 15 C -0.14 -1.89 4.90 -83.68 -0.41 -2.30 15 16 H 0.13 1.35 8.27 -51.03 -0.42 0.93 15 17 C 0.46 8.34 7.00 26.34 0.18 8.53 15 18 O -0.46 -9.21 18.03 -18.52 -0.33 -9.54 15 19 O -0.31 -6.48 12.07 -56.39 -0.68 -7.16 15 20 C 0.00 -0.09 5.41 -38.64 -0.21 -0.30 15 21 H 0.01 0.18 1.40 -154.42 -0.22 -0.04 15 22 C -0.11 -1.72 6.09 -81.43 -0.50 -2.21 15 23 H 0.14 2.04 8.24 -51.25 -0.42 1.62 15 24 C -0.11 -1.65 6.16 -22.02 -0.14 -1.79 15 25 H 0.26 7.29 8.31 -40.82 -0.34 6.95 15 26 H 0.08 0.80 8.17 -51.71 -0.42 0.37 15 27 H 0.06 0.86 7.44 -52.10 -0.39 0.47 15 28 H 0.07 0.81 8.16 -51.81 -0.42 0.39 15 29 H 0.10 1.86 7.46 -51.95 -0.39 1.47 15 LS Contribution 243.86 15.07 3.67 3.67 Total: -1.00 -32.66 243.86 -6.32 -38.98 By element: Atomic # 1 Polarization: 0.77 SS G_CDS: -3.05 Total: -2.28 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -1.52 Total: -7.70 kcal Atomic # 7 Polarization: -26.34 SS G_CDS: 0.76 Total: -25.58 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -1.16 Total: -23.68 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -32.66 -6.32 -38.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224378873.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.168 kcal (2) G-P(sol) polarization free energy of solvation -32.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds