Wall clock time and date at job start Sun Mar 29 2020 21:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31575 * 1 3 3 Si 1.86808 * 119.99619 * 2 1 4 4 H 1.48501 * 109.46994 * 239.99951 * 3 2 1 5 5 H 1.48498 * 109.47201 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46953 * 120.00198 * 3 2 1 7 7 C 1.38638 * 120.00520 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99875 * 180.02562 * 7 2 1 9 9 O 1.34922 * 119.99430 * 359.97438 * 7 2 1 10 10 C 1.43385 * 116.99764 * 180.02562 * 9 7 2 11 11 H 1.10058 * 110.32128 * 325.60748 * 10 9 7 12 12 C 1.59892 * 113.09949 * 198.85387 * 10 9 7 13 13 H 1.09858 * 117.79460 * 67.18694 * 12 10 9 14 14 C 1.57896 * 106.08697 * 200.47242 * 12 10 9 15 15 C 1.56782 * 109.68645 * 66.14215 * 14 12 10 16 16 H 1.10576 * 115.18583 * 126.86433 * 15 14 12 17 17 C 1.55216 * 109.37098 * 258.74548 * 15 14 12 18 18 O 1.21391 * 125.68712 * 272.42070 * 17 15 14 19 19 O 1.40149 * 110.17570 * 92.47732 * 17 15 14 20 20 C 1.40667 * 90.91317 * 327.98889 * 19 17 15 21 21 H 1.07902 * 80.91796 * 327.93042 * 20 19 17 22 22 C 1.59100 * 100.92405 * 67.48620 * 20 19 17 23 23 H 1.10194 * 122.05858 * 50.38503 * 22 20 19 24 24 C 1.56835 * 101.80198 * 186.25710 * 22 20 19 25 25 H 0.96997 * 120.00360 * 0.02562 * 1 2 3 26 26 H 1.09393 * 108.83204 * 185.45154 * 14 12 10 27 27 H 1.08700 * 110.01420 * 304.29054 * 14 12 10 28 28 H 1.09213 * 111.71518 * 147.66852 * 24 22 20 29 29 H 1.08970 * 112.05748 * 272.86646 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6179 0.0000 4 1 3.1034 1.6966 -1.2125 5 1 1.2846 2.7465 -0.0006 6 1 3.1034 1.6965 1.2124 7 6 2.0091 -1.2006 0.0005 8 1 3.0890 -1.2005 0.0010 9 8 1.3344 -2.3690 0.0016 10 6 2.1154 -3.5715 0.0027 11 1 3.0378 -3.4287 -0.5805 12 6 1.2898 -4.8561 -0.4715 13 1 0.9620 -4.8963 -1.5192 14 6 2.0747 -6.1094 0.0820 15 6 2.0174 -6.1189 1.6487 16 1 1.6523 -7.0598 2.1005 17 6 3.3598 -5.5850 2.2163 18 8 4.3477 -6.2526 2.4441 19 8 3.2764 -4.2034 2.4357 20 6 2.3937 -4.0614 1.3497 21 1 2.9848 -4.8858 0.9821 22 6 1.1128 -4.8279 1.9002 23 1 0.6830 -4.6117 2.8915 24 6 0.1738 -4.8266 0.6440 25 1 -0.4850 0.8400 -0.0004 26 1 1.6016 -7.0190 -0.2994 27 1 3.1054 -6.0848 -0.2626 28 1 -0.4523 -5.7207 0.6066 29 1 -0.4333 -3.9234 0.5878 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224378873.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:27 Heat of formation + Delta-G solvation = 55.484708 kcal Electronic energy + Delta-G solvation = -15962.462870 eV Core-core repulsion = 13244.370861 eV Total energy + Delta-G solvation = -2718.092009 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -45.18707 -39.67919 -38.24692 -37.20088 -33.86766 -30.78091 -29.30782 -28.88720 -26.66372 -24.12131 -22.02374 -21.28352 -20.68977 -19.73318 -18.52385 -17.88044 -17.37358 -16.86541 -16.39134 -15.96854 -15.48351 -14.91333 -14.57864 -13.65192 -13.55989 -13.37081 -13.15007 -12.88566 -12.59137 -12.33269 -12.20175 -12.06911 -11.99033 -11.74368 -11.39403 -11.22140 -10.81173 -10.47820 -9.99442 -8.19986 -5.88511 0.50467 1.31852 1.38722 1.45967 1.51632 2.27161 2.44014 2.90782 2.97704 3.13122 3.44796 3.59228 3.69778 3.79119 4.02557 4.13324 4.16700 4.35159 4.58828 4.62115 4.73803 4.87133 4.95176 5.06849 5.14023 5.19494 5.31416 5.42967 5.99235 6.18503 7.22735 7.94209 9.02339 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.040518 B = 0.008911 C = 0.007965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.879118 B = 3141.335170 C = 3514.750162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.027 4.027 3 Si 0.995 3.005 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.382 4.382 8 H 0.060 0.940 9 O -0.293 6.293 10 C 0.125 3.875 11 H 0.046 0.954 12 C -0.076 4.076 13 H 0.155 0.845 14 C -0.108 4.108 15 C -0.105 4.105 16 H 0.177 0.823 17 C 0.451 3.549 18 O -0.485 6.485 19 O -0.351 6.351 20 C -0.053 4.053 21 H 0.035 0.965 22 C -0.105 4.105 23 H 0.142 0.858 24 C -0.103 4.103 25 H 0.263 0.737 26 H 0.136 0.864 27 H 0.060 0.940 28 H 0.119 0.881 29 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.474 -12.763 -0.798 12.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.222 4.222 3 Si 0.817 3.183 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.461 4.461 8 H 0.077 0.923 9 O -0.208 6.208 10 C 0.065 3.935 11 H 0.064 0.936 12 C -0.094 4.094 13 H 0.173 0.827 14 C -0.145 4.145 15 C -0.124 4.124 16 H 0.194 0.806 17 C 0.296 3.704 18 O -0.368 6.368 19 O -0.271 6.271 20 C -0.109 4.109 21 H 0.053 0.947 22 C -0.123 4.123 23 H 0.160 0.840 24 C -0.140 4.140 25 H 0.072 0.928 26 H 0.154 0.846 27 H 0.079 0.921 28 H 0.137 0.863 29 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.164 -12.903 -0.540 12.915 hybrid contribution 1.355 1.359 0.380 1.957 sum 1.191 -11.544 -0.159 11.606 Atomic orbital electron populations 1.70122 1.07024 1.27385 1.52395 1.25991 0.96712 1.01284 0.98220 0.84987 0.77509 0.76806 0.78978 1.18812 1.19765 1.19949 1.21158 0.90396 0.83711 1.50802 0.92269 1.85657 1.32606 1.10675 1.91814 1.23207 0.94209 0.89495 0.86624 0.93592 1.25237 0.95615 0.87601 1.00899 0.82745 1.23305 1.01079 1.00014 0.90091 1.25985 0.86950 1.01797 0.97703 0.80591 1.27433 0.90932 0.80982 0.71055 1.90731 1.37040 1.60942 1.48038 1.88912 1.65070 1.24465 1.48681 1.24930 0.90440 1.06093 0.89420 0.94741 1.26168 0.93070 0.92066 1.00990 0.84019 1.23420 0.96237 1.03484 0.90868 0.92830 0.84604 0.92129 0.86293 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.79 13.67 21.61 0.30 -56.49 15 2 C -0.03 -1.58 5.49 84.83 0.47 -1.12 15 3 Si 0.99 45.18 29.55 68.60 2.03 47.21 15 4 H -0.26 -11.27 7.11 99.48 0.71 -10.57 15 5 H -0.27 -11.88 7.11 99.48 0.71 -11.17 15 6 H -0.27 -12.22 7.11 99.48 0.71 -11.51 15 7 C -0.38 -22.40 9.82 67.92 0.67 -21.73 15 8 H 0.06 3.38 7.72 -2.91 -0.02 3.36 15 9 O -0.29 -16.01 8.73 -81.91 -0.72 -16.72 15 10 C 0.12 5.19 3.29 30.96 0.10 5.29 15 11 H 0.05 1.96 8.03 -1.82 -0.01 1.94 15 12 C -0.08 -2.06 5.60 -4.83 -0.03 -2.09 15 13 H 0.16 3.48 8.21 -1.93 -0.02 3.46 15 14 C -0.11 -2.22 5.28 33.66 0.18 -2.04 15 15 C -0.11 -2.47 4.90 -6.30 -0.03 -2.50 15 16 H 0.18 2.53 8.27 -1.54 -0.01 2.52 15 17 C 0.45 15.80 7.00 64.98 0.45 16.26 15 18 O -0.48 -18.93 18.03 19.56 0.35 -18.58 15 19 O -0.35 -15.11 12.07 -115.93 -1.40 -16.51 15 20 C -0.05 -2.09 5.41 22.88 0.12 -1.97 15 21 H 0.04 1.23 1.40 -156.52 -0.22 1.02 15 22 C -0.10 -3.13 6.09 -4.84 -0.03 -3.16 15 23 H 0.14 4.02 8.24 -1.75 -0.01 4.01 15 24 C -0.10 -2.81 6.16 33.65 0.21 -2.60 15 25 H 0.26 15.06 8.31 -92.71 -0.77 14.29 15 26 H 0.14 1.56 8.17 -2.18 -0.02 1.54 15 27 H 0.06 1.37 7.44 -2.54 -0.02 1.35 15 28 H 0.12 2.11 8.16 -2.27 -0.02 2.09 15 29 H 0.06 2.19 7.46 -2.40 -0.02 2.17 15 Total: -1.00 -75.91 243.86 3.65 -72.26 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: 0.98 Total: 4.51 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: 2.11 Total: -15.66 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: 0.30 Total: -56.49 kcal Atomic # 8 Polarization: -50.05 SS G_CDS: -1.76 Total: -51.81 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -75.91 3.65 -72.26 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224378873.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.743 kcal (2) G-P(sol) polarization free energy of solvation -75.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds