Wall clock time and date at job start Sun Mar 29 2020 21:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00079 * 2 1 4 4 H 1.48508 * 109.47347 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47300 * 300.00094 * 3 2 1 6 6 H 1.48502 * 109.47299 * 60.00199 * 3 2 1 7 7 C 1.37878 * 119.99696 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99811 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00085 * 359.97438 * 7 2 1 10 10 C 1.53519 * 114.16898 * 180.02562 * 9 7 2 11 11 N 1.47483 * 87.92770 * 220.14063 * 10 9 7 12 12 C 1.46904 * 111.00084 * 138.70504 * 11 10 9 13 13 C 1.50696 * 109.47094 * 169.99524 * 12 11 10 14 14 C 1.37814 * 122.61980 * 90.00087 * 13 12 11 15 15 N 1.30084 * 116.87940 * 179.97438 * 14 13 12 16 16 S 1.69596 * 107.15333 * 0.02562 * 15 14 13 17 17 C 1.35143 * 122.62332 * 269.97227 * 13 12 11 18 18 C 1.47473 * 87.84040 * 27.01109 * 11 10 9 19 19 H 0.97003 * 119.99650 * 359.97438 * 1 2 3 20 20 H 1.09000 * 113.25755 * 312.95080 * 9 7 2 21 21 H 1.08995 * 113.47785 * 105.37195 * 10 9 7 22 22 H 1.09004 * 113.47399 * 334.90140 * 10 9 7 23 23 H 1.09002 * 109.47155 * 49.99098 * 12 11 10 24 24 H 1.09002 * 109.47020 * 289.99705 * 12 11 10 25 25 H 1.07997 * 121.55649 * 0.25124 * 14 13 12 26 26 H 1.07999 * 127.24392 * 0.04853 * 17 13 12 27 27 H 1.09001 * 113.47835 * 87.75743 * 18 11 10 28 28 H 1.09005 * 113.47840 * 218.22771 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.1496 -3.7438 -0.0005 11 7 1.2049 -4.3601 -0.9507 12 6 1.9204 -5.0901 -2.0058 13 6 0.9381 -5.9037 -2.8084 14 6 0.3023 -5.4091 -3.9266 15 7 -0.5240 -6.2084 -4.5352 16 16 -0.5259 -7.6724 -3.6790 17 6 0.6122 -7.1756 -2.4882 18 6 0.8517 -2.9993 -1.3959 19 1 -0.4850 0.8401 0.0004 20 1 0.4451 -2.5308 0.7328 21 1 2.1889 -4.2510 0.9634 22 1 3.1378 -3.5658 -0.4246 23 1 2.6573 -5.7534 -1.5530 24 1 2.4249 -4.3799 -2.6609 25 1 0.4850 -4.4063 -4.2834 26 1 0.9867 -7.7573 -1.6589 27 1 1.4935 -2.6227 -2.1923 28 1 -0.2091 -2.8755 -1.6144 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232224744.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:05 Heat of formation + Delta-G solvation = 55.234686 kcal Electronic energy + Delta-G solvation = -12845.540540 eV Core-core repulsion = 10602.483312 eV Total energy + Delta-G solvation = -2243.057228 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.068 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.93551 -39.46864 -34.82098 -33.30100 -30.44055 -27.69471 -26.59040 -25.57925 -23.68486 -20.64493 -20.44407 -18.98273 -18.36104 -16.80488 -16.65119 -16.16695 -15.80855 -15.14158 -14.83580 -14.36452 -13.90919 -13.84098 -13.33537 -13.05977 -12.87949 -12.48983 -12.33026 -12.00456 -11.66668 -11.34028 -11.21907 -10.86591 -10.59298 -10.47171 -9.71720 -9.48198 -8.13960 -6.25134 -0.22091 0.62406 0.90231 1.42618 1.44750 1.47171 1.56091 2.43663 3.15907 3.44304 3.81258 4.01366 4.04014 4.31492 4.44503 4.53277 4.62613 4.76493 4.87821 4.93881 4.98809 5.01386 5.27347 5.45550 5.65136 5.67536 5.87192 6.30994 6.40826 6.85574 7.43834 8.95882 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.058567 B = 0.005778 C = 0.005552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.968711 B = 4845.098493 C = 5041.714057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.013 3.987 3 Si 0.957 3.043 4 H -0.262 1.262 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.062 0.938 9 C 0.017 3.983 10 C 0.012 3.988 11 N -0.479 5.479 12 C 0.085 3.915 13 C -0.165 4.165 14 C 0.096 3.904 15 N -0.498 5.498 16 S 0.257 5.743 17 C -0.175 4.175 18 C 0.018 3.982 19 H 0.261 0.739 20 H 0.026 0.974 21 H 0.076 0.924 22 H 0.069 0.931 23 H 0.100 0.900 24 H 0.057 0.943 25 H 0.183 0.817 26 H 0.209 0.791 27 H 0.057 0.943 28 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.903 -12.972 -5.119 14.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.186 4.186 3 Si 0.782 3.218 4 H -0.185 1.185 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.081 0.919 9 C -0.002 4.002 10 C -0.116 4.116 11 N -0.201 5.201 12 C -0.046 4.046 13 C -0.182 4.182 14 C -0.102 4.102 15 N -0.318 5.318 16 S 0.409 5.591 17 C -0.324 4.324 18 C -0.111 4.111 19 H 0.070 0.930 20 H 0.045 0.955 21 H 0.094 0.906 22 H 0.087 0.913 23 H 0.118 0.882 24 H 0.075 0.925 25 H 0.200 0.800 26 H 0.226 0.774 27 H 0.075 0.925 28 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.779 -14.472 -6.191 15.841 hybrid contribution 1.800 2.699 0.616 3.303 sum 3.580 -11.773 -5.574 13.509 Atomic orbital electron populations 1.70110 1.07602 1.27436 1.51093 1.25837 0.95553 1.02750 0.94461 0.85527 0.79299 0.79477 0.77474 1.18549 1.20816 1.20821 1.21427 0.93117 0.91333 1.50624 0.91936 1.20060 0.94642 0.92331 0.93199 1.23840 0.95538 0.95300 0.96962 1.68836 1.27783 1.12677 1.10848 1.21246 0.93340 0.96943 0.93044 1.20120 1.04548 0.95392 0.98129 1.22956 0.92731 1.01213 0.93343 1.76703 1.24079 1.03597 1.27432 1.83723 1.39242 1.19131 1.16967 1.26743 1.01787 0.99038 1.04872 1.23843 0.98796 0.88492 0.99983 0.92968 0.95526 0.90574 0.91326 0.88223 0.92514 0.80019 0.77405 0.92466 0.94288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.82 13.26 21.45 0.28 -53.53 15 2 C 0.01 0.72 5.46 84.66 0.46 1.18 15 3 Si 0.96 42.49 29.54 68.60 2.03 44.52 15 4 H -0.26 -11.04 7.11 99.48 0.71 -10.33 15 5 H -0.28 -12.38 7.11 99.48 0.71 -11.67 15 6 H -0.28 -12.41 7.11 99.48 0.71 -11.70 15 7 C -0.53 -27.97 8.83 25.60 0.23 -27.74 15 8 H 0.06 3.19 7.81 -2.91 -0.02 3.17 15 9 C 0.02 0.83 3.76 -11.19 -0.04 0.79 15 10 C 0.01 0.47 7.25 83.58 0.61 1.07 15 11 N -0.48 -17.70 6.32 -932.41 -5.89 -23.59 15 12 C 0.09 2.44 5.08 85.55 0.43 2.88 15 13 C -0.16 -4.52 5.42 -20.68 -0.11 -4.63 15 14 C 0.10 2.79 11.07 84.85 0.94 3.73 15 15 N -0.50 -15.00 12.09 -62.60 -0.76 -15.76 15 16 S 0.26 6.08 23.72 -56.49 -1.34 4.74 15 17 C -0.18 -4.01 11.19 67.11 0.75 -3.26 15 18 C 0.02 0.80 7.28 83.58 0.61 1.41 15 19 H 0.26 14.45 8.31 -92.71 -0.77 13.68 15 20 H 0.03 1.49 8.11 -2.39 -0.02 1.47 15 21 H 0.08 2.73 8.14 -2.39 -0.02 2.71 15 22 H 0.07 2.46 7.87 -2.39 -0.02 2.44 15 23 H 0.10 2.38 8.06 -2.39 -0.02 2.36 15 24 H 0.06 1.61 7.29 -2.39 -0.02 1.60 15 25 H 0.18 5.00 8.06 -2.91 -0.02 4.97 15 26 H 0.21 3.48 8.06 -2.91 -0.02 3.45 15 27 H 0.06 2.47 7.38 -2.39 -0.02 2.45 15 28 H 0.04 1.88 8.14 -2.38 -0.02 1.86 15 Total: -1.00 -61.08 258.80 -0.65 -61.74 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: 1.15 Total: 6.47 kcal Atomic # 6 Polarization: -28.45 SS G_CDS: 3.87 Total: -24.58 kcal Atomic # 7 Polarization: -86.52 SS G_CDS: -6.36 Total: -92.88 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 16 Polarization: 6.08 SS G_CDS: -1.34 Total: 4.74 kcal Total: -61.08 -0.65 -61.74 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232224744.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.970 kcal (2) G-P(sol) polarization free energy of solvation -61.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds