Wall clock time and date at job start Sun Mar 29 2020 21:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38263 * 119.99073 * 2 1 4 4 C 1.38224 * 120.02464 * 180.02562 * 3 2 1 5 5 C 1.38237 * 120.01313 * 0.23958 * 4 3 2 6 6 C 1.50693 * 120.00782 * 179.74160 * 5 4 3 7 7 C 1.53002 * 109.47306 * 99.99487 * 6 5 4 8 8 C 1.50693 * 109.47306 * 180.02562 * 7 6 5 9 9 H 1.08001 * 120.00383 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99881 * 179.97438 * 8 7 6 11 11 N 1.31511 * 120.00185 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99631 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47232 * 90.00516 * 12 10 8 14 14 H 1.48505 * 109.47106 * 210.00412 * 12 10 8 15 15 H 1.48502 * 109.47316 * 329.99976 * 12 10 8 16 16 C 1.38328 * 119.98312 * 359.46435 * 5 4 3 17 17 Cl 1.73603 * 120.01182 * 180.28262 * 16 5 4 18 18 C 1.38190 * 119.99252 * 179.97438 * 2 1 3 19 19 H 1.08996 * 109.46574 * 89.99966 * 1 2 3 20 20 H 1.08997 * 109.46993 * 209.99756 * 1 2 3 21 21 H 1.08993 * 109.47306 * 330.00150 * 1 2 3 22 22 H 1.07996 * 119.98722 * 359.97438 * 3 2 1 23 23 H 1.08002 * 119.99032 * 179.97438 * 4 3 2 24 24 H 1.08996 * 109.47169 * 219.99584 * 6 5 4 25 25 H 1.08999 * 109.47367 * 339.99986 * 6 5 4 26 26 H 1.09002 * 109.47493 * 300.00260 * 7 6 5 27 27 H 1.09002 * 109.46958 * 59.99764 * 7 6 5 28 28 H 0.96998 * 119.99805 * 179.97438 * 11 10 8 29 29 H 1.08001 * 120.00864 * 359.97346 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5804 1.1983 -0.0005 5 6 4.2726 0.0017 -0.0061 6 6 5.7795 0.0028 -0.0125 7 6 6.2958 -0.2503 1.4053 8 6 7.8027 -0.2486 1.3990 9 1 8.3387 -0.0831 0.4761 10 6 8.4973 -0.4572 2.5717 11 7 7.8447 -0.6582 3.6956 12 14 10.3653 -0.4544 2.5638 13 1 10.8593 0.9246 2.8077 14 1 10.8662 -1.3559 3.6324 15 1 10.8556 -0.9300 1.2452 16 6 3.5816 -1.1966 0.0001 17 17 4.4502 -2.6997 0.0006 18 6 2.1979 -1.1969 0.0005 19 1 -0.3632 0.0000 -1.0277 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3633 0.8899 0.5138 22 1 1.6578 2.1326 -0.0004 23 1 4.1197 2.1341 -0.0010 24 1 6.1405 -0.7828 -0.6763 25 1 6.1407 0.9695 -0.3635 26 1 5.9348 0.5353 2.0692 27 1 5.9346 -1.2169 1.7564 28 1 8.3334 -0.8054 4.5205 29 1 1.6579 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250058022.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:55 Heat of formation + Delta-G solvation = -26.757087 kcal Electronic energy + Delta-G solvation = -12685.831676 eV Core-core repulsion = 10404.882560 eV Total energy + Delta-G solvation = -2280.949116 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.066 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.48820 -37.35460 -36.17061 -34.42292 -31.87967 -31.61200 -28.44860 -25.88065 -23.71186 -23.14298 -21.48966 -18.56171 -17.08360 -16.87524 -16.52226 -16.16678 -14.95103 -14.69180 -14.56165 -14.44905 -13.94416 -13.65428 -13.14714 -13.09356 -12.80590 -12.69366 -12.35632 -12.21952 -12.12405 -11.70580 -11.67061 -11.48139 -11.09466 -10.53145 -9.73730 -9.31187 -8.18028 -6.29111 0.26672 0.36563 1.30360 1.39220 1.40875 1.51891 2.41139 2.70333 3.14775 3.85981 3.88824 4.10103 4.28639 4.39781 4.59642 4.68650 4.83062 4.87299 4.90935 4.99500 5.15609 5.30976 5.32814 5.47495 5.52042 5.58689 5.80922 5.86948 5.98220 6.25141 6.87107 7.39235 8.93571 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.041920 B = 0.006814 C = 0.006333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.785461 B = 4108.466572 C = 4420.278622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.089 4.089 3 C -0.113 4.113 4 C -0.116 4.116 5 C -0.088 4.088 6 C -0.069 4.069 7 C 0.039 3.961 8 C -0.540 4.540 9 H 0.060 0.940 10 C 0.001 3.999 11 N -0.932 5.932 12 Si 0.963 3.037 13 H -0.270 1.270 14 H -0.283 1.283 15 H -0.264 1.264 16 C -0.049 4.049 17 Cl -0.082 7.082 18 C -0.119 4.119 19 H 0.086 0.914 20 H 0.073 0.927 21 H 0.082 0.918 22 H 0.158 0.842 23 H 0.138 0.862 24 H 0.061 0.939 25 H 0.066 0.934 26 H -0.015 1.015 27 H 0.002 0.998 28 H 0.263 0.737 29 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.860 1.788 -8.483 16.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.089 4.089 3 C -0.131 4.131 4 C -0.134 4.134 5 C -0.089 4.089 6 C -0.106 4.106 7 C 0.002 3.998 8 C -0.578 4.578 9 H 0.078 0.922 10 C -0.197 4.197 11 N -0.573 5.573 12 Si 0.788 3.212 13 H -0.196 1.196 14 H -0.208 1.208 15 H -0.188 1.188 16 C -0.076 4.076 17 Cl -0.053 7.053 18 C -0.138 4.138 19 H 0.104 0.896 20 H 0.092 0.908 21 H 0.101 0.899 22 H 0.175 0.825 23 H 0.156 0.844 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.003 0.997 27 H 0.021 0.979 28 H 0.071 0.929 29 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -13.761 1.613 -8.310 16.156 hybrid contribution 1.369 -0.365 0.420 1.478 sum -12.392 1.248 -7.890 14.743 Atomic orbital electron populations 1.20817 0.87837 1.04005 1.03589 1.20230 0.98112 0.91685 0.98904 1.21446 0.93235 0.99154 0.99233 1.21268 0.95197 0.96912 1.00046 1.20146 0.96773 0.92652 0.99301 1.20588 0.89441 1.01604 0.98954 1.18881 0.94606 0.95219 0.91131 1.21666 0.93038 1.48667 0.94444 0.92214 1.25954 1.03779 0.94804 0.95173 1.70110 1.37497 1.50063 0.99598 0.85478 0.79380 0.78296 0.78089 1.19581 1.20813 1.18830 1.21052 0.93123 0.86581 1.06835 1.98349 1.77523 1.32521 1.96887 1.21140 0.90805 1.00080 1.01746 0.89581 0.90770 0.89897 0.82472 0.84440 0.92084 0.91497 0.99674 0.97926 0.92852 0.83724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 10.01 71.24 0.71 -0.90 15 2 C -0.09 -2.14 5.88 -19.87 -0.12 -2.26 15 3 C -0.11 -2.81 9.70 22.27 0.22 -2.59 15 4 C -0.12 -3.65 9.67 22.27 0.22 -3.44 15 5 C -0.09 -3.35 5.14 -19.85 -0.10 -3.45 15 6 C -0.07 -3.02 4.74 29.85 0.14 -2.88 15 7 C 0.04 2.13 4.90 29.85 0.15 2.27 15 8 C -0.54 -31.63 9.11 25.60 0.23 -31.40 15 9 H 0.06 3.35 7.74 -2.91 -0.02 3.33 15 10 C 0.00 0.03 5.46 84.66 0.46 0.49 15 11 N -0.93 -58.22 13.29 21.45 0.28 -57.93 15 12 Si 0.96 45.29 29.54 68.60 2.03 47.32 15 13 H -0.27 -12.20 7.11 99.48 0.71 -11.49 15 14 H -0.28 -13.01 7.11 99.48 0.71 -12.30 15 15 H -0.26 -11.90 7.11 99.48 0.71 -11.19 15 16 C -0.05 -1.78 6.31 22.32 0.14 -1.64 15 17 Cl -0.08 -3.09 26.60 -2.72 -0.07 -3.16 15 18 C -0.12 -3.42 9.49 22.29 0.21 -3.21 15 19 H 0.09 1.06 8.14 -2.39 -0.02 1.04 15 20 H 0.07 1.03 8.08 -2.39 -0.02 1.01 15 21 H 0.08 1.03 8.08 -2.39 -0.02 1.01 15 22 H 0.16 2.75 8.06 -2.91 -0.02 2.73 15 23 H 0.14 3.94 8.04 -2.91 -0.02 3.91 15 24 H 0.06 2.69 7.37 -2.39 -0.02 2.68 15 25 H 0.07 2.77 8.00 -2.39 -0.02 2.75 15 26 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 15 27 H 0.00 0.14 7.23 -2.39 -0.02 0.12 15 28 H 0.26 15.38 8.31 -92.71 -0.77 14.61 15 29 H 0.15 3.50 8.06 -2.91 -0.02 3.47 15 Total: -1.00 -67.63 266.41 5.63 -62.00 By element: Atomic # 1 Polarization: -0.36 SS G_CDS: 1.13 Total: 0.76 kcal Atomic # 6 Polarization: -51.25 SS G_CDS: 2.26 Total: -48.99 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: 0.28 Total: -57.93 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Atomic # 17 Polarization: -3.09 SS G_CDS: -0.07 Total: -3.16 kcal Total: -67.63 5.63 -62.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250058022.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.246 kcal (2) G-P(sol) polarization free energy of solvation -67.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds