Wall clock time and date at job start Sun Mar 29 2020 22:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99715 * 2 1 4 4 H 1.48507 * 109.46631 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47320 * 299.99937 * 3 2 1 6 6 H 1.48501 * 109.47143 * 60.00242 * 3 2 1 7 7 C 1.37875 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99998 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00126 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47240 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47240 * 180.02562 * 10 9 7 12 12 C 1.38271 * 119.99018 * 270.27784 * 11 10 9 13 13 C 1.38219 * 120.05287 * 180.27975 * 12 11 10 14 14 C 1.38227 * 120.02402 * 359.44048 * 13 12 11 15 15 C 1.50699 * 120.01020 * 180.30126 * 14 13 12 16 16 O 1.42895 * 109.47464 * 0.02562 * 15 14 13 17 17 C 1.38435 * 119.97401 * 0.28161 * 14 13 12 18 18 F 1.35097 * 120.02386 * 180.02562 * 17 14 13 19 19 C 1.38173 * 119.98826 * 90.00173 * 11 10 9 20 20 H 0.97002 * 120.00107 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47367 * 60.00502 * 9 7 2 22 22 H 1.09000 * 109.47350 * 300.00201 * 9 7 2 23 23 H 1.09004 * 109.47376 * 60.00472 * 10 9 7 24 24 H 1.09000 * 109.46988 * 300.00269 * 10 9 7 25 25 H 1.08000 * 119.97453 * 359.97438 * 12 11 10 26 26 H 1.08002 * 119.99072 * 179.72656 * 13 12 11 27 27 H 1.08998 * 109.46643 * 120.00488 * 15 14 13 28 28 H 1.08997 * 109.47130 * 240.00118 * 15 14 13 29 29 H 0.96693 * 114.00313 * 179.97438 * 16 15 14 30 30 H 1.08004 * 120.01046 * 0.02562 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4918 -4.9671 -0.0012 12 6 1.1408 -5.5632 1.1961 13 6 0.4548 -6.7631 1.1971 14 6 0.1087 -7.3629 0.0008 15 6 -0.6452 -8.6677 0.0022 16 8 -0.8838 -9.0786 1.3498 17 6 0.4546 -6.7642 -1.1986 18 9 0.1163 -7.3493 -2.3684 19 6 1.1470 -5.5649 -1.1982 20 1 -0.4850 0.8401 0.0004 21 1 0.6241 -2.5568 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 2.8719 -3.6044 0.8895 24 1 2.8720 -3.6043 -0.8905 25 1 1.4072 -5.0932 2.1313 26 1 0.1850 -7.2299 2.1329 27 1 -1.5976 -8.5375 -0.5117 28 1 -0.0565 -9.4280 -0.5110 29 1 -1.3663 -9.9129 1.4271 30 1 1.4177 -5.0972 -2.1333 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250060389.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:46 Heat of formation + Delta-G solvation = -92.328823 kcal Electronic energy + Delta-G solvation = -14507.938014 eV Core-core repulsion = 11795.809119 eV Total energy + Delta-G solvation = -2712.128895 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.71240 -39.10525 -36.87959 -34.07147 -32.27870 -30.24387 -29.74500 -26.45530 -24.09429 -22.54613 -21.53822 -20.11789 -17.65985 -16.82470 -16.21070 -15.72928 -15.68920 -15.62408 -14.66729 -14.48467 -13.77709 -13.60707 -13.21786 -12.62577 -12.33315 -12.13465 -11.88114 -11.22207 -11.14920 -10.94309 -10.82032 -10.48377 -10.37429 -9.88836 -9.61230 -9.12124 -8.53140 -8.36841 -8.09643 -6.01731 -4.05173 1.44009 1.56500 3.30376 3.37924 3.41810 3.89370 4.00175 4.44362 4.50675 4.86768 5.11286 5.19381 5.32486 5.34078 5.41493 5.67759 5.73218 6.14057 6.19182 6.38323 6.48771 6.58183 6.62806 6.93791 6.99372 7.25309 7.45339 7.64967 7.77104 7.97429 8.37318 9.01923 9.59241 11.09361 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.049630 B = 0.005288 C = 0.005108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.043194 B = 5293.392563 C = 5480.696707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.029 3.971 10 C -0.082 4.082 11 C -0.027 4.027 12 C -0.132 4.132 13 C -0.068 4.068 14 C -0.151 4.151 15 C 0.127 3.873 16 O -0.567 6.567 17 C 0.099 3.901 18 F -0.145 7.145 19 C -0.154 4.154 20 H 0.260 0.740 21 H 0.018 0.982 22 H 0.019 0.981 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.129 0.871 26 H 0.136 0.864 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.381 0.619 30 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.244 -16.186 0.371 16.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.008 4.008 10 C -0.119 4.119 11 C -0.027 4.027 12 C -0.150 4.150 13 C -0.086 4.086 14 C -0.152 4.152 15 C 0.049 3.951 16 O -0.372 6.372 17 C 0.080 3.920 18 F -0.124 7.124 19 C -0.173 4.173 20 H 0.070 0.930 21 H 0.037 0.963 22 H 0.037 0.963 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.147 0.853 26 H 0.154 0.846 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.228 0.772 30 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.084 -15.535 0.445 15.541 hybrid contribution -0.052 0.381 -0.442 0.586 sum -0.136 -15.154 0.003 15.155 Atomic orbital electron populations 1.69983 1.06088 1.26573 1.50660 1.25027 0.94838 0.99297 0.95240 0.86528 0.80107 0.83724 0.77601 1.19685 1.20998 1.20991 1.21275 0.93114 0.90868 1.50840 0.92455 1.19096 0.93646 0.90388 0.97702 1.20906 0.98457 0.90781 1.01784 1.20293 0.94861 0.95882 0.91674 1.21213 0.99893 0.95472 0.98409 1.20796 0.96009 0.94472 0.97335 1.19518 1.04760 0.98231 0.92693 1.20657 0.97889 0.93057 0.83458 1.86443 1.79938 1.44542 1.26314 1.17374 1.00824 0.93745 0.80058 1.91441 1.90695 1.83829 1.46453 1.21017 1.01713 0.94551 0.99974 0.92990 0.96348 0.96258 0.91674 0.91875 0.85297 0.84622 0.92392 0.92516 0.77199 0.84696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.95 13.29 55.43 0.74 -26.21 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 9 C 0.03 0.74 4.95 -27.88 -0.14 0.60 16 10 C -0.08 -1.67 5.28 -27.88 -0.15 -1.82 16 11 C -0.03 -0.49 5.13 -104.63 -0.54 -1.03 16 12 C -0.13 -2.20 9.70 -39.58 -0.38 -2.59 16 13 C -0.07 -1.05 9.38 -39.59 -0.37 -1.42 16 14 C -0.15 -2.29 5.89 -104.55 -0.62 -2.90 16 15 C 0.13 1.48 7.02 36.01 0.25 1.73 16 16 O -0.57 -6.05 12.14 -35.23 -0.43 -6.48 16 17 C 0.10 1.61 7.25 -39.42 -0.29 1.33 16 18 F -0.15 -2.26 16.80 2.25 0.04 -2.22 16 19 C -0.15 -2.68 9.68 -39.52 -0.38 -3.06 16 20 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 21 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.06 1.27 8.09 -51.93 -0.42 0.85 16 24 H 0.06 1.24 8.08 -51.93 -0.42 0.82 16 25 H 0.13 1.99 8.06 -52.49 -0.42 1.57 16 26 H 0.14 1.91 7.01 -52.49 -0.37 1.54 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.38 2.04 9.12 45.56 0.42 2.45 16 30 H 0.14 2.24 8.06 -52.48 -0.42 1.81 16 LS Contribution 268.96 15.07 4.05 4.05 Total: -1.00 -31.42 268.96 -6.51 -37.94 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: -2.87 Total: -0.99 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: -3.02 Total: -22.61 kcal Atomic # 7 Polarization: -26.95 SS G_CDS: 0.74 Total: -26.21 kcal Atomic # 8 Polarization: -6.05 SS G_CDS: -0.43 Total: -6.48 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.04 Total: -2.22 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -31.42 -6.51 -37.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060389.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.394 kcal (2) G-P(sol) polarization free energy of solvation -31.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds