Wall clock time and date at job start Sun Mar 29 2020 22:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99715 * 2 1 4 4 H 1.48507 * 109.46631 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47320 * 299.99937 * 3 2 1 6 6 H 1.48501 * 109.47143 * 60.00242 * 3 2 1 7 7 C 1.37875 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99998 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00126 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47240 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47240 * 180.02562 * 10 9 7 12 12 C 1.38271 * 119.99018 * 270.27784 * 11 10 9 13 13 C 1.38219 * 120.05287 * 180.27975 * 12 11 10 14 14 C 1.38227 * 120.02402 * 359.44048 * 13 12 11 15 15 C 1.50699 * 120.01020 * 180.30126 * 14 13 12 16 16 O 1.42895 * 109.47464 * 0.02562 * 15 14 13 17 17 C 1.38435 * 119.97401 * 0.28161 * 14 13 12 18 18 F 1.35097 * 120.02386 * 180.02562 * 17 14 13 19 19 C 1.38173 * 119.98826 * 90.00173 * 11 10 9 20 20 H 0.97002 * 120.00107 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47367 * 60.00502 * 9 7 2 22 22 H 1.09000 * 109.47350 * 300.00201 * 9 7 2 23 23 H 1.09004 * 109.47376 * 60.00472 * 10 9 7 24 24 H 1.09000 * 109.46988 * 300.00269 * 10 9 7 25 25 H 1.08000 * 119.97453 * 359.97438 * 12 11 10 26 26 H 1.08002 * 119.99072 * 179.72656 * 13 12 11 27 27 H 1.08998 * 109.46643 * 120.00488 * 15 14 13 28 28 H 1.08997 * 109.47130 * 240.00118 * 15 14 13 29 29 H 0.96693 * 114.00313 * 179.97438 * 16 15 14 30 30 H 1.08004 * 120.01046 * 0.02562 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4918 -4.9671 -0.0012 12 6 1.1408 -5.5632 1.1961 13 6 0.4548 -6.7631 1.1971 14 6 0.1087 -7.3629 0.0008 15 6 -0.6452 -8.6677 0.0022 16 8 -0.8838 -9.0786 1.3498 17 6 0.4546 -6.7642 -1.1986 18 9 0.1163 -7.3493 -2.3684 19 6 1.1470 -5.5649 -1.1982 20 1 -0.4850 0.8401 0.0004 21 1 0.6241 -2.5568 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 2.8719 -3.6044 0.8895 24 1 2.8720 -3.6043 -0.8905 25 1 1.4072 -5.0932 2.1313 26 1 0.1850 -7.2299 2.1329 27 1 -1.5976 -8.5375 -0.5117 28 1 -0.0565 -9.4280 -0.5110 29 1 -1.3663 -9.9129 1.4271 30 1 1.4177 -5.0972 -2.1333 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250060389.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:45 Heat of formation + Delta-G solvation = -112.350309 kcal Electronic energy + Delta-G solvation = -14508.806211 eV Core-core repulsion = 11795.809119 eV Total energy + Delta-G solvation = -2712.997092 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.95728 -40.36863 -37.81343 -35.86347 -34.05050 -31.55403 -31.31390 -28.03670 -25.68864 -23.81875 -23.20612 -21.60774 -18.71759 -18.48125 -17.87266 -16.93064 -16.85954 -16.81262 -16.50495 -15.60015 -15.15082 -14.83075 -14.82861 -14.34927 -13.93850 -13.63279 -13.37229 -12.87665 -12.82444 -12.46839 -12.30056 -12.02358 -11.75101 -11.61193 -11.22764 -11.11374 -10.56911 -9.82612 -9.41984 -8.20018 -6.32098 0.14928 0.26529 1.41454 1.41566 1.55158 2.40952 2.59692 3.09408 3.13415 3.29662 3.73273 3.94077 4.04236 4.27784 4.37299 4.48074 4.50665 4.60617 4.82784 4.87442 5.11488 5.14982 5.19602 5.35635 5.49052 5.50007 5.80110 5.83011 5.94558 6.21704 6.85123 6.90971 7.37729 8.91922 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.049630 B = 0.005288 C = 0.005108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.043194 B = 5293.392563 C = 5480.696707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.259 1.259 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.543 4.543 8 H 0.065 0.935 9 C 0.035 3.965 10 C -0.067 4.067 11 C -0.051 4.051 12 C -0.135 4.135 13 C -0.069 4.069 14 C -0.147 4.147 15 C 0.129 3.871 16 O -0.580 6.580 17 C 0.092 3.908 18 F -0.141 7.141 19 C -0.164 4.164 20 H 0.263 0.737 21 H -0.011 1.011 22 H -0.007 1.007 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.137 0.863 26 H 0.153 0.847 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.405 0.595 30 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.252 -17.121 0.713 17.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.183 1.183 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.580 4.580 8 H 0.083 0.917 9 C -0.002 4.002 10 C -0.105 4.105 11 C -0.051 4.051 12 C -0.153 4.153 13 C -0.086 4.086 14 C -0.148 4.148 15 C 0.052 3.948 16 O -0.389 6.389 17 C 0.073 3.927 18 F -0.120 7.120 19 C -0.183 4.183 20 H 0.072 0.928 21 H 0.007 0.993 22 H 0.011 0.989 23 H 0.092 0.908 24 H 0.086 0.914 25 H 0.155 0.845 26 H 0.171 0.829 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.256 0.744 30 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.413 -16.504 0.790 16.528 hybrid contribution -0.272 0.565 -0.539 0.827 sum 0.142 -15.939 0.251 15.941 Atomic orbital electron populations 1.70120 1.07938 1.27749 1.51707 1.26000 0.95721 1.03460 0.94660 0.85370 0.79172 0.78616 0.77712 1.18316 1.20518 1.20394 1.21735 0.93743 0.92054 1.50512 0.91669 1.18936 0.94029 0.92331 0.94932 1.20622 0.97369 0.90049 1.02416 1.20109 0.96584 0.95636 0.92801 1.21382 0.99738 0.96025 0.98160 1.20992 0.95456 0.93888 0.98297 1.19977 1.03485 0.99388 0.91925 1.20657 0.98189 0.91642 0.84356 1.86375 1.80584 1.46419 1.25554 1.17388 1.01023 0.93564 0.80759 1.91448 1.90629 1.83631 1.46277 1.21094 1.02117 0.95300 0.99765 0.92778 0.99308 0.98862 0.90788 0.91421 0.84480 0.82906 0.91248 0.90606 0.74395 0.84745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.48 13.29 21.45 0.28 -57.19 16 2 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 3 Si 0.97 44.21 29.54 68.60 2.03 46.23 16 4 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.54 -30.81 9.11 25.60 0.23 -30.58 16 8 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 9 C 0.03 1.85 4.95 29.85 0.15 2.00 16 10 C -0.07 -2.78 5.28 29.85 0.16 -2.63 16 11 C -0.05 -1.89 5.13 -19.87 -0.10 -1.99 16 12 C -0.14 -4.44 9.70 22.27 0.22 -4.23 16 13 C -0.07 -2.00 9.38 22.26 0.21 -1.79 16 14 C -0.15 -4.17 5.89 -19.82 -0.12 -4.28 16 15 C 0.13 2.62 7.02 71.24 0.50 3.12 16 16 O -0.58 -10.50 12.14 -148.98 -1.81 -12.31 16 17 C 0.09 2.89 7.25 22.37 0.16 3.05 16 18 F -0.14 -4.20 16.80 44.97 0.76 -3.44 16 19 C -0.16 -5.73 9.68 22.31 0.22 -5.52 16 20 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 21 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 22 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 23 H 0.07 2.87 8.09 -2.38 -0.02 2.86 16 24 H 0.07 2.68 8.08 -2.39 -0.02 2.66 16 25 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 26 H 0.15 3.93 7.01 -2.91 -0.02 3.91 16 27 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.40 2.93 9.12 -74.06 -0.68 2.26 16 30 H 0.13 4.56 8.06 -2.91 -0.02 4.53 16 Total: -1.00 -67.27 268.96 3.81 -63.45 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: 0.47 Total: 5.67 kcal Atomic # 6 Polarization: -44.50 SS G_CDS: 2.09 Total: -42.42 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: 0.28 Total: -57.19 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: -1.81 Total: -12.31 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.76 Total: -3.44 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Total: -67.27 3.81 -63.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060389.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.897 kcal (2) G-P(sol) polarization free energy of solvation -67.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds