Wall clock time and date at job start Sun Mar 29 2020 22:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81000 * 1 3 3 C 1.76199 * 100.00148 * 2 1 4 4 N 1.32556 * 119.22312 * 179.97438 * 3 2 1 5 5 C 1.32264 * 120.73306 * 179.97438 * 4 3 2 6 6 C 1.38617 * 119.20393 * 0.28650 * 5 4 3 7 7 C 1.50699 * 120.71659 * 179.70434 * 6 5 4 8 8 C 1.52998 * 109.47276 * 89.99306 * 7 6 5 9 9 C 1.50704 * 109.46898 * 180.02562 * 8 7 6 10 10 H 1.08000 * 120.00112 * 359.97438 * 9 8 7 11 11 C 1.37881 * 119.99913 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99748 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 119.99964 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47450 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47198 * 119.99618 * 13 11 9 16 16 H 1.48501 * 109.47367 * 239.99621 * 13 11 9 17 17 C 1.38630 * 118.56836 * 359.42683 * 6 5 4 18 18 N 1.32258 * 119.20012 * 0.56965 * 17 6 5 19 19 H 1.08997 * 109.47043 * 59.99945 * 1 2 3 20 20 H 1.08998 * 109.47401 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47093 * 300.00196 * 1 2 3 22 22 H 1.08002 * 120.39407 * 180.02562 * 5 4 3 23 23 H 1.08998 * 109.47375 * 209.99723 * 7 6 5 24 24 H 1.09003 * 109.46902 * 329.99200 * 7 6 5 25 25 H 1.08997 * 109.47541 * 299.99763 * 8 7 6 26 26 H 1.09004 * 109.47380 * 60.00636 * 8 7 6 27 27 H 0.97000 * 119.99275 * 180.02562 * 12 11 9 28 28 H 1.07998 * 120.39639 * 180.26444 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 3.3677 2.1716 0.0005 5 6 3.6316 3.4677 0.0000 6 6 2.5810 4.3719 0.0050 7 6 2.8426 5.8559 0.0113 8 6 2.9300 6.3646 -1.4290 9 6 3.1923 7.8486 -1.4226 10 1 3.2868 8.3762 -0.4850 11 6 3.3106 8.5329 -2.6138 12 7 3.1951 7.8904 -3.7555 13 14 3.6350 10.3724 -2.6059 14 1 3.7221 10.8538 -1.2037 15 1 4.9143 10.6525 -3.3061 16 1 2.5262 11.0737 -3.3015 17 6 1.2843 3.8815 -0.0018 18 7 1.0891 2.5734 -0.0014 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 4.6535 3.8172 0.0000 23 1 2.0298 6.3661 0.5281 24 1 3.7826 6.0569 0.5253 25 1 3.7429 5.8546 -1.9458 26 1 1.9900 6.1637 -1.9430 27 1 3.2787 8.3718 -4.5934 28 1 0.4437 4.5595 -0.0025 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250061145.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:39 Heat of formation + Delta-G solvation = 7.581062 kcal Electronic energy + Delta-G solvation = -12467.478615 eV Core-core repulsion = 10222.354970 eV Total energy + Delta-G solvation = -2245.123645 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.068 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.90370 -36.42300 -34.82132 -34.41095 -31.25304 -29.78529 -27.45271 -25.60301 -24.76666 -22.30371 -19.58089 -18.74387 -18.55710 -16.56930 -16.45522 -16.11833 -15.41701 -14.96099 -14.79368 -14.49845 -14.40680 -14.23410 -13.47024 -13.34828 -12.87985 -12.70895 -12.16148 -11.97525 -11.86540 -11.81554 -11.53876 -11.17851 -10.68034 -10.57939 -10.33960 -8.74036 -8.19913 -6.31422 -0.25678 0.02017 0.22190 1.21734 1.41719 1.42904 1.55392 2.41219 2.60203 3.14093 3.15905 3.66331 3.68767 3.94243 4.00269 4.34290 4.38134 4.65795 4.81476 4.94931 4.96712 5.04079 5.31823 5.50896 5.68218 5.79982 5.84961 6.21095 6.77306 6.86407 7.38721 8.91628 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.067997 B = 0.004996 C = 0.004945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.686355 B = 5603.325020 C = 5660.816186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 S -0.015 6.015 3 C 0.256 3.744 4 N -0.520 5.520 5 C 0.151 3.849 6 C -0.174 4.174 7 C -0.052 4.052 8 C 0.034 3.966 9 C -0.538 4.538 10 H 0.069 0.931 11 C -0.002 4.002 12 N -0.935 5.935 13 Si 0.964 3.036 14 H -0.258 1.258 15 H -0.282 1.282 16 H -0.281 1.281 17 C 0.153 3.847 18 N -0.527 5.527 19 H 0.084 0.916 20 H 0.136 0.864 21 H 0.089 0.911 22 H 0.188 0.812 23 H 0.081 0.919 24 H 0.079 0.921 25 H -0.010 1.010 26 H -0.009 1.009 27 H 0.262 0.738 28 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.683 -11.606 8.909 15.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 S 0.218 5.782 3 C -0.119 4.119 4 N -0.236 5.236 5 C -0.017 4.017 6 C -0.182 4.182 7 C -0.091 4.091 8 C -0.004 4.004 9 C -0.576 4.576 10 H 0.087 0.913 11 C -0.199 4.199 12 N -0.576 5.576 13 Si 0.789 3.211 14 H -0.181 1.181 15 H -0.208 1.208 16 H -0.207 1.207 17 C -0.015 4.015 18 N -0.244 5.244 19 H 0.103 0.897 20 H 0.154 0.846 21 H 0.108 0.892 22 H 0.204 0.796 23 H 0.099 0.901 24 H 0.098 0.902 25 H 0.008 0.992 26 H 0.009 0.991 27 H 0.071 0.929 28 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -4.147 -13.604 8.743 16.694 hybrid contribution -0.379 3.002 -0.590 3.083 sum -4.527 -10.601 8.154 14.119 Atomic orbital electron populations 1.23608 0.91587 1.08000 1.06907 1.85577 1.09667 0.92118 1.90877 1.25372 0.87552 1.01858 0.97134 1.68516 1.21626 1.17630 1.15877 1.23526 1.01253 0.87168 0.89710 1.21957 0.95505 0.99649 1.01047 1.20455 1.02949 0.87194 0.98460 1.18966 0.94951 0.94902 0.91537 1.21723 1.48432 0.94527 0.92889 0.91303 1.25980 0.95108 1.03530 0.95299 1.70117 1.51418 1.37973 0.98057 0.85407 0.77574 0.79346 0.78770 1.18118 1.20764 1.20722 1.23499 0.97273 0.91191 0.89539 1.68755 1.34278 1.04612 1.16770 0.89729 0.84588 0.89170 0.79560 0.90095 0.90248 0.99204 0.99066 0.92891 0.79340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 9.62 113.37 1.09 -1.26 15 2 S -0.01 -0.37 22.89 -56.49 -1.29 -1.66 15 3 C 0.26 8.41 7.85 180.43 1.42 9.83 15 4 N -0.52 -18.19 10.40 -196.44 -2.04 -20.23 15 5 C 0.15 5.06 11.00 84.72 0.93 5.99 15 6 C -0.17 -5.93 5.17 -19.68 -0.10 -6.03 15 7 C -0.05 -1.90 5.33 29.85 0.16 -1.75 15 8 C 0.03 1.67 4.96 29.85 0.15 1.81 15 9 C -0.54 -28.90 9.11 25.60 0.23 -28.67 15 10 H 0.07 3.48 7.74 -2.91 -0.02 3.45 15 11 C 0.00 -0.09 5.46 84.66 0.46 0.38 15 12 N -0.94 -56.02 13.29 21.45 0.28 -55.73 15 13 Si 0.96 42.94 29.54 68.60 2.03 44.96 15 14 H -0.26 -10.76 7.11 99.48 0.71 -10.05 15 15 H -0.28 -12.38 7.11 99.48 0.71 -11.68 15 16 H -0.28 -12.33 7.11 99.48 0.71 -11.63 15 17 C 0.15 4.89 11.00 84.72 0.93 5.82 15 18 N -0.53 -16.94 9.14 -196.44 -1.80 -18.74 15 19 H 0.08 1.65 8.11 -2.40 -0.02 1.63 15 20 H 0.14 1.50 8.14 -2.40 -0.02 1.48 15 21 H 0.09 1.63 8.11 -2.40 -0.02 1.61 15 22 H 0.19 5.39 8.06 -2.91 -0.02 5.36 15 23 H 0.08 2.73 8.10 -2.39 -0.02 2.71 15 24 H 0.08 2.71 8.10 -2.39 -0.02 2.69 15 25 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 15 26 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 15 27 H 0.26 14.81 8.31 -92.71 -0.77 14.04 15 28 H 0.19 5.10 8.06 -2.91 -0.02 5.07 15 Total: -1.00 -65.26 265.09 3.60 -61.67 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: 1.15 Total: 3.59 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: 5.27 Total: -13.87 kcal Atomic # 7 Polarization: -91.14 SS G_CDS: -3.55 Total: -94.70 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 16 Polarization: -0.37 SS G_CDS: -1.29 Total: -1.66 kcal Total: -65.26 3.60 -61.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250061145.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.248 kcal (2) G-P(sol) polarization free energy of solvation -65.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds