Wall clock time and date at job start Sun Mar 29 2020 22:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00032 * 2 1 4 4 H 1.48503 * 109.46958 * 240.00234 * 3 2 1 5 5 H 1.48494 * 109.47004 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47127 * 120.00039 * 3 2 1 7 7 C 1.37881 * 120.00257 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99833 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99849 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47439 * 179.97438 * 9 7 2 11 11 C 1.52990 * 109.47370 * 179.97438 * 10 9 7 12 12 C 1.50705 * 109.47219 * 180.02562 * 11 10 9 13 13 C 1.38171 * 120.00278 * 265.00006 * 12 11 10 14 14 C 1.38209 * 120.08013 * 179.74195 * 13 12 11 15 15 C 1.38521 * 120.08217 * 0.23961 * 14 13 12 16 16 F 1.35101 * 119.99738 * 180.02562 * 15 14 13 17 17 C 1.38338 * 120.00861 * 0.02562 * 15 14 13 18 18 C 1.38710 * 119.91703 * 359.97438 * 17 15 14 19 19 O 1.35902 * 120.04066 * 180.02562 * 18 17 15 20 20 H 0.97000 * 120.00225 * 0.02562 * 1 2 3 21 21 H 1.09009 * 109.46995 * 60.00021 * 9 7 2 22 22 H 1.09001 * 109.46998 * 300.00303 * 9 7 2 23 23 H 1.09009 * 109.46844 * 60.00132 * 10 9 7 24 24 H 1.08999 * 109.46986 * 300.00856 * 10 9 7 25 25 H 1.09000 * 109.47163 * 60.00307 * 11 10 9 26 26 H 1.08999 * 109.47854 * 300.00433 * 11 10 9 27 27 H 1.08002 * 119.96378 * 0.02777 * 13 12 11 28 28 H 1.07993 * 119.96115 * 180.25946 * 14 13 12 29 29 H 1.07999 * 120.04490 * 179.97438 * 17 15 14 30 30 H 0.96696 * 114.00588 * 90.00346 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4803 -4.9870 -0.0012 12 6 2.4596 -6.1325 -0.0018 13 6 2.8284 -6.7255 -1.1941 14 6 3.7305 -7.7726 -1.1970 15 6 4.2633 -8.2334 -0.0042 16 9 5.1453 -9.2568 -0.0091 17 6 3.8923 -7.6459 1.1920 18 6 2.9869 -6.5950 1.1951 19 8 2.6211 -6.0156 2.3687 20 1 -0.4850 0.8400 -0.0004 21 1 0.6240 -2.5567 -0.8904 22 1 0.6247 -2.5571 0.8897 23 1 2.8726 -3.6047 0.8878 24 1 2.8713 -3.6039 -0.8922 25 1 0.8527 -5.0447 -0.8905 26 1 0.8545 -5.0450 0.8894 27 1 2.4149 -6.3674 -2.1253 28 1 4.0206 -8.2320 -2.1303 29 1 4.3069 -8.0050 2.1223 30 1 3.1819 -5.2734 2.6326 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065419.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:12 Heat of formation + Delta-G solvation = -89.742848 kcal Electronic energy + Delta-G solvation = -14493.473258 eV Core-core repulsion = 11781.456499 eV Total energy + Delta-G solvation = -2712.016759 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.93600 -39.81173 -36.49127 -34.72136 -32.57567 -30.46719 -29.74860 -26.58728 -23.64729 -22.95279 -21.35990 -20.15003 -18.57847 -16.82488 -16.57147 -16.33341 -15.63319 -15.27915 -14.63052 -14.40095 -14.16990 -13.77551 -13.41680 -12.61579 -12.53522 -11.88149 -11.65029 -11.51549 -11.20691 -10.84733 -10.72852 -10.64583 -10.43584 -9.71490 -9.39443 -9.14724 -8.94778 -8.35902 -8.32070 -6.00915 -4.03688 1.08838 1.14629 3.32100 3.36860 3.38886 3.44207 3.99637 4.44554 4.48495 4.76887 4.90426 4.98898 5.29484 5.34767 5.67884 5.77028 5.93735 6.00291 6.04225 6.20697 6.38131 6.38807 6.74152 6.78732 6.85715 7.08980 7.65788 7.68373 7.80559 7.98959 8.41075 9.03330 9.60487 11.10260 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.049168 B = 0.005016 C = 0.004982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.343146 B = 5580.409669 C = 5618.863168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.021 3.979 10 C -0.100 4.100 11 C -0.083 4.083 12 C -0.099 4.099 13 C -0.077 4.077 14 C -0.161 4.161 15 C 0.097 3.903 16 F -0.143 7.143 17 C -0.182 4.182 18 C 0.136 3.864 19 O -0.491 6.491 20 H 0.261 0.739 21 H 0.016 0.984 22 H 0.017 0.983 23 H 0.044 0.956 24 H 0.048 0.952 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.138 0.862 28 H 0.134 0.866 29 H 0.137 0.863 30 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.723 -14.128 -0.005 15.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.138 4.138 11 C -0.120 4.120 12 C -0.099 4.099 13 C -0.095 4.095 14 C -0.180 4.180 15 C 0.078 3.922 16 F -0.122 7.122 17 C -0.201 4.201 18 C 0.091 3.909 19 O -0.302 6.302 20 H 0.071 0.929 21 H 0.034 0.966 22 H 0.035 0.965 23 H 0.063 0.937 24 H 0.067 0.933 25 H 0.089 0.911 26 H 0.095 0.905 27 H 0.156 0.844 28 H 0.152 0.848 29 H 0.155 0.845 30 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 6.158 -14.462 0.001 15.718 hybrid contribution 1.022 1.095 0.053 1.499 sum 7.180 -13.366 0.055 15.173 Atomic orbital electron populations 1.69948 1.06054 1.26723 1.50719 1.25018 0.94829 0.99212 0.95318 0.86674 0.79601 0.83213 0.78599 1.20264 1.21269 1.20266 1.21215 0.92944 0.91137 1.50772 0.92834 1.19111 0.93981 0.91173 0.97349 1.21586 0.99000 0.93052 1.00154 1.20738 0.96065 0.92061 1.03183 1.20660 0.99398 0.97910 0.91964 1.20892 0.96132 0.94366 0.98157 1.21128 1.00112 0.99677 0.97042 1.17400 0.92270 0.88292 0.94277 1.91481 1.66453 1.56817 1.97410 1.21320 1.00930 1.00100 0.97777 1.17990 0.94055 0.93357 0.85497 1.84754 1.57849 1.51263 1.36316 0.92928 0.96560 0.96454 0.93727 0.93324 0.91135 0.90457 0.84445 0.84777 0.84498 0.74586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.02 0.53 4.97 -27.89 -0.14 0.39 16 10 C -0.10 -1.97 5.13 -26.74 -0.14 -2.11 16 11 C -0.08 -1.38 5.07 -27.89 -0.14 -1.52 16 12 C -0.10 -1.44 5.15 -104.46 -0.54 -1.97 16 13 C -0.08 -0.99 9.67 -39.62 -0.38 -1.37 16 14 C -0.16 -1.91 10.02 -39.49 -0.40 -2.31 16 15 C 0.10 1.24 7.30 -39.44 -0.29 0.95 16 16 F -0.14 -1.83 17.27 2.25 0.04 -1.79 16 17 C -0.18 -2.33 9.97 -39.37 -0.39 -2.73 16 18 C 0.14 1.91 6.68 -39.23 -0.26 1.64 16 19 O -0.49 -6.67 12.63 -19.43 -0.25 -6.92 16 20 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 21 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 22 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.04 0.84 8.14 -51.92 -0.42 0.42 16 24 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.07 1.12 8.05 -51.93 -0.42 0.71 16 26 H 0.08 1.33 7.68 -51.93 -0.40 0.93 16 27 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 28 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 29 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.40 4.02 9.06 45.56 0.41 4.43 16 LS Contribution 270.16 15.07 4.07 4.07 Total: -1.00 -30.71 270.16 -6.41 -37.12 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -2.90 Total: -0.53 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: -3.09 Total: -22.39 kcal Atomic # 7 Polarization: -26.73 SS G_CDS: 0.74 Total: -25.99 kcal Atomic # 8 Polarization: -6.67 SS G_CDS: -0.25 Total: -6.92 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.71 -6.41 -37.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065419.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.620 kcal (2) G-P(sol) polarization free energy of solvation -30.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds