Wall clock time and date at job start Sun Mar 29 2020 22:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00032 * 2 1 4 4 H 1.48503 * 109.46958 * 240.00234 * 3 2 1 5 5 H 1.48494 * 109.47004 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47127 * 120.00039 * 3 2 1 7 7 C 1.37881 * 120.00257 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99833 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99849 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47439 * 179.97438 * 9 7 2 11 11 C 1.52990 * 109.47370 * 179.97438 * 10 9 7 12 12 C 1.50705 * 109.47219 * 180.02562 * 11 10 9 13 13 C 1.38171 * 120.00278 * 265.00006 * 12 11 10 14 14 C 1.38209 * 120.08013 * 179.74195 * 13 12 11 15 15 C 1.38521 * 120.08217 * 0.23961 * 14 13 12 16 16 F 1.35101 * 119.99738 * 180.02562 * 15 14 13 17 17 C 1.38338 * 120.00861 * 0.02562 * 15 14 13 18 18 C 1.38710 * 119.91703 * 359.97438 * 17 15 14 19 19 O 1.35902 * 120.04066 * 180.02562 * 18 17 15 20 20 H 0.97000 * 120.00225 * 0.02562 * 1 2 3 21 21 H 1.09009 * 109.46995 * 60.00021 * 9 7 2 22 22 H 1.09001 * 109.46998 * 300.00303 * 9 7 2 23 23 H 1.09009 * 109.46844 * 60.00132 * 10 9 7 24 24 H 1.08999 * 109.46986 * 300.00856 * 10 9 7 25 25 H 1.09000 * 109.47163 * 60.00307 * 11 10 9 26 26 H 1.08999 * 109.47854 * 300.00433 * 11 10 9 27 27 H 1.08002 * 119.96378 * 0.02777 * 13 12 11 28 28 H 1.07993 * 119.96115 * 180.25946 * 14 13 12 29 29 H 1.07999 * 120.04490 * 179.97438 * 17 15 14 30 30 H 0.96696 * 114.00588 * 90.00346 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4803 -4.9870 -0.0012 12 6 2.4596 -6.1325 -0.0018 13 6 2.8284 -6.7255 -1.1941 14 6 3.7305 -7.7726 -1.1970 15 6 4.2633 -8.2334 -0.0042 16 9 5.1453 -9.2568 -0.0091 17 6 3.8923 -7.6459 1.1920 18 6 2.9869 -6.5950 1.1951 19 8 2.6211 -6.0156 2.3687 20 1 -0.4850 0.8400 -0.0004 21 1 0.6240 -2.5567 -0.8904 22 1 0.6247 -2.5571 0.8897 23 1 2.8726 -3.6047 0.8878 24 1 2.8713 -3.6039 -0.8922 25 1 0.8527 -5.0447 -0.8905 26 1 0.8545 -5.0450 0.8894 27 1 2.4149 -6.3674 -2.1253 28 1 4.0206 -8.2320 -2.1303 29 1 4.3069 -8.0050 2.1223 30 1 3.1819 -5.2734 2.6326 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065419.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:12 Heat of formation + Delta-G solvation = -108.441201 kcal Electronic energy + Delta-G solvation = -14494.284080 eV Core-core repulsion = 11781.456499 eV Total energy + Delta-G solvation = -2712.827580 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.92719 -40.85685 -37.51283 -36.39897 -34.43708 -31.79757 -30.97083 -28.23391 -25.33926 -23.95398 -22.72624 -21.72948 -19.60597 -18.45646 -17.85222 -17.56022 -16.62442 -16.61316 -16.29197 -15.66059 -15.52849 -14.77491 -14.64830 -14.36530 -14.09303 -13.29618 -13.06818 -13.01320 -12.61517 -12.48897 -12.31284 -12.30596 -11.74141 -11.40782 -11.28229 -11.10432 -10.52703 -9.93429 -9.42918 -8.17726 -6.28929 0.07348 0.15398 1.41634 1.44129 1.52118 2.41530 2.45540 3.00686 3.15461 3.50022 3.78014 3.83979 4.00342 4.24431 4.46361 4.56001 4.65301 4.80438 4.97583 5.03825 5.07200 5.16490 5.29791 5.31164 5.51531 5.55295 5.78633 5.80484 5.89861 6.27430 6.75794 6.88590 7.40443 8.93677 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.049168 B = 0.005016 C = 0.004982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.343146 B = 5580.409669 C = 5618.863168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.963 3.037 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.543 4.543 8 H 0.060 0.940 9 C 0.023 3.977 10 C -0.086 4.086 11 C -0.071 4.071 12 C -0.117 4.117 13 C -0.076 4.076 14 C -0.155 4.155 15 C 0.094 3.906 16 F -0.143 7.143 17 C -0.184 4.184 18 C 0.129 3.871 19 O -0.503 6.503 20 H 0.263 0.737 21 H -0.008 1.008 22 H -0.009 1.009 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.154 0.846 28 H 0.161 0.839 29 H 0.151 0.849 30 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.287 -14.549 -0.438 16.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.787 3.213 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.581 4.581 8 H 0.078 0.922 9 C -0.014 4.014 10 C -0.123 4.123 11 C -0.108 4.108 12 C -0.118 4.118 13 C -0.094 4.094 14 C -0.173 4.173 15 C 0.074 3.926 16 F -0.121 7.121 17 C -0.203 4.203 18 C 0.084 3.916 19 O -0.316 6.316 20 H 0.072 0.928 21 H 0.011 0.989 22 H 0.010 0.990 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.172 0.828 28 H 0.179 0.821 29 H 0.169 0.831 30 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 7.740 -14.893 -0.427 16.789 hybrid contribution 0.531 1.171 0.195 1.301 sum 8.271 -13.721 -0.233 16.023 Atomic orbital electron populations 1.70087 1.07814 1.27779 1.51731 1.25963 0.95714 1.03294 0.94799 0.85540 0.78298 0.78270 0.79183 1.19189 1.20970 1.19169 1.21690 0.93533 0.92443 1.50462 0.92183 1.19032 0.94488 0.93023 0.94888 1.21351 0.97803 0.92583 1.00595 1.20480 0.96150 0.91427 1.02772 1.20524 0.99991 0.98125 0.93163 1.21087 0.95921 0.94252 0.98100 1.21379 0.99114 0.98973 0.97865 1.17564 0.92162 0.88188 0.94650 1.91486 1.66439 1.56789 1.97426 1.21435 1.00613 0.99646 0.98625 1.18084 0.94367 0.93814 0.85358 1.84721 1.58591 1.51959 1.36331 0.92821 0.98936 0.99040 0.93016 0.92981 0.90860 0.91663 0.82824 0.82144 0.83135 0.73136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.66 13.29 21.45 0.28 -56.38 16 2 C 0.00 0.00 5.46 84.66 0.46 0.46 16 3 Si 0.96 43.76 29.54 68.60 2.03 45.79 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 7 C -0.54 -30.51 9.11 25.60 0.23 -30.28 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 9 C 0.02 1.18 4.97 29.85 0.15 1.33 16 10 C -0.09 -3.35 5.13 30.59 0.16 -3.20 16 11 C -0.07 -2.33 5.07 29.85 0.15 -2.18 16 12 C -0.12 -3.27 5.15 -19.76 -0.10 -3.37 16 13 C -0.08 -1.76 9.67 22.25 0.22 -1.55 16 14 C -0.15 -3.24 10.02 22.33 0.22 -3.02 16 15 C 0.09 2.17 7.30 22.36 0.16 2.33 16 16 F -0.14 -3.32 17.27 44.97 0.78 -2.54 16 17 C -0.18 -4.38 9.97 22.41 0.22 -4.16 16 18 C 0.13 3.44 6.68 22.50 0.15 3.59 16 19 O -0.50 -13.31 12.63 -92.44 -1.17 -14.48 16 20 H 0.26 15.04 8.31 -92.71 -0.77 14.26 16 21 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 22 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 23 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 24 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.07 2.32 8.05 -2.39 -0.02 2.30 16 26 H 0.06 2.28 7.68 -2.39 -0.02 2.26 16 27 H 0.15 3.02 8.06 -2.91 -0.02 2.99 16 28 H 0.16 2.48 8.06 -2.91 -0.02 2.45 16 29 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 30 H 0.41 8.01 9.06 -74.06 -0.67 7.34 16 Total: -1.00 -65.12 270.16 4.42 -60.70 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: 0.47 Total: 6.93 kcal Atomic # 6 Polarization: -42.05 SS G_CDS: 2.03 Total: -40.03 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: 0.28 Total: -56.38 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -1.17 Total: -14.48 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.78 Total: -2.54 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -65.12 4.42 -60.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065419.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.738 kcal (2) G-P(sol) polarization free energy of solvation -65.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds