Wall clock time and date at job start Sun Mar 29 2020 22:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33383 * 125.20368 * 2 1 4 4 C 1.38425 * 114.92174 * 179.97438 * 3 2 1 5 5 C 1.50704 * 122.54253 * 179.73216 * 4 3 2 6 6 C 1.52998 * 109.47097 * 265.02544 * 5 4 3 7 7 C 1.53002 * 109.46910 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.46736 * 179.97438 * 7 6 5 9 9 H 1.07999 * 120.00121 * 0.02562 * 8 7 6 10 10 C 1.37878 * 119.99759 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00039 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00119 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.46757 * 0.02562 * 12 10 8 14 14 H 1.48493 * 109.47054 * 120.00451 * 12 10 8 15 15 H 1.48502 * 109.47199 * 240.00706 * 12 10 8 16 16 C 1.33390 * 114.92123 * 359.97438 * 4 3 2 17 17 C 1.50699 * 125.20296 * 179.97438 * 16 4 3 18 18 S 1.75887 * 125.19993 * 179.97438 * 2 1 3 19 19 H 1.08999 * 109.47125 * 89.99462 * 1 2 3 20 20 H 1.08998 * 109.47162 * 209.99957 * 1 2 3 21 21 H 1.09004 * 109.46782 * 329.99301 * 1 2 3 22 22 H 1.08001 * 122.54319 * 359.97438 * 3 2 1 23 23 H 1.09004 * 109.46788 * 25.02291 * 5 4 3 24 24 H 1.09003 * 109.47150 * 145.02136 * 5 4 3 25 25 H 1.08998 * 109.47058 * 300.00022 * 6 5 4 26 26 H 1.08997 * 109.47033 * 59.99916 * 6 5 4 27 27 H 1.08991 * 109.47299 * 300.00234 * 7 6 5 28 28 H 1.08997 * 109.46981 * 60.00325 * 7 6 5 29 29 H 0.97000 * 120.00008 * 179.97438 * 11 10 8 30 30 H 1.09007 * 109.47039 * 90.00840 * 17 16 4 31 31 H 1.08998 * 109.47062 * 210.00206 * 17 16 4 32 32 H 1.08994 * 109.47215 * 330.00270 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 0.0006 5 6 4.6624 1.9481 -0.0053 6 6 5.1001 2.2302 -1.4439 7 6 6.1397 3.3528 -1.4499 8 6 6.5713 3.6301 -2.8669 9 1 6.1463 3.0628 -3.6817 10 6 7.5080 4.6089 -3.1232 11 7 8.0251 5.3001 -2.1310 12 14 8.0425 4.9532 -4.8796 13 1 7.3166 4.0462 -5.8047 14 1 7.7311 6.3636 -5.2242 15 1 9.5042 4.7238 -5.0062 16 6 3.9751 -0.4478 0.0016 17 6 5.3861 -0.9771 0.0018 18 16 2.5209 -1.4373 0.0006 19 1 -0.3633 0.0001 -1.0277 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3633 0.8900 0.5140 22 1 1.8670 2.0895 -0.0004 23 1 4.2265 2.8497 0.4252 24 1 5.5273 1.6451 0.5849 25 1 5.5359 1.3286 -1.8745 26 1 4.2353 2.5332 -2.0340 27 1 5.7036 4.2541 -1.0195 28 1 7.0046 3.0501 -0.8597 29 1 8.6843 5.9884 -2.3112 30 1 5.7264 -1.1040 1.0296 31 1 5.4136 -1.9384 -0.5113 32 1 6.0388 -0.2719 -0.5126 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065555.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:20 Heat of formation + Delta-G solvation = -5.629639 kcal Electronic energy + Delta-G solvation = -12759.672318 eV Core-core repulsion = 10617.516158 eV Total energy + Delta-G solvation = -2142.156160 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 224.093 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.53100 -34.40408 -33.00639 -31.51401 -29.41976 -27.43916 -24.47564 -23.48305 -21.25035 -20.02260 -17.99309 -16.87234 -16.18503 -14.72322 -14.42510 -14.13748 -14.02952 -13.27131 -13.12375 -12.84554 -12.57176 -12.29599 -12.06464 -11.74140 -11.33338 -11.20596 -11.12923 -10.78331 -10.63617 -10.52497 -10.33487 -9.61309 -9.28216 -9.04416 -8.31990 -8.24672 -7.96162 -5.97007 -3.98907 1.18698 1.78692 2.16148 2.96339 3.32700 3.40119 3.44784 4.48809 4.89140 5.13555 5.24418 5.38765 5.42904 5.45905 5.60324 5.72682 5.83785 5.86639 5.89399 6.16266 6.19492 6.33449 6.38027 6.57559 6.79277 6.96622 6.97991 7.19532 7.72407 7.87232 8.04062 8.47358 9.08693 9.65060 11.14352 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.043588 B = 0.005286 C = 0.005122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.228647 B = 5296.112993 C = 5465.070293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.188 4.188 3 C -0.124 4.124 4 C -0.089 4.089 5 C -0.063 4.063 6 C -0.101 4.101 7 C 0.020 3.980 8 C -0.518 4.518 9 H 0.055 0.945 10 C 0.056 3.944 11 N -0.896 5.896 12 Si 0.890 3.110 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.284 1.284 16 C -0.179 4.179 17 C -0.083 4.083 18 S 0.059 5.941 19 H 0.071 0.929 20 H 0.064 0.936 21 H 0.074 0.926 22 H 0.137 0.863 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.048 0.952 26 H 0.047 0.953 27 H 0.015 0.985 28 H 0.016 0.984 29 H 0.259 0.741 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.529 -11.823 5.741 17.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.305 4.305 3 C -0.154 4.154 4 C -0.100 4.100 5 C -0.103 4.103 6 C -0.139 4.139 7 C -0.017 4.017 8 C -0.556 4.556 9 H 0.073 0.927 10 C -0.145 4.145 11 N -0.536 5.536 12 Si 0.718 3.282 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.210 1.210 16 C -0.296 4.296 17 C -0.142 4.142 18 S 0.324 5.676 19 H 0.090 0.910 20 H 0.083 0.917 21 H 0.093 0.907 22 H 0.155 0.845 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.709 -13.266 5.777 18.614 hybrid contribution 0.596 1.788 -0.979 2.123 sum -11.113 -11.478 4.798 16.682 Atomic orbital electron populations 1.20280 0.88197 1.02698 1.02473 1.24271 0.99458 0.95543 1.11194 1.20032 0.92648 0.99143 1.03617 1.19063 0.94830 0.94529 1.01609 1.20504 0.95495 0.94441 0.99852 1.21598 0.99622 1.00157 0.92536 1.19127 0.93078 0.92579 0.96912 1.21315 1.22759 1.18434 0.93125 0.92721 1.25022 0.96405 0.96116 0.96935 1.69977 1.29447 1.23399 1.30782 0.86567 0.78386 0.78066 0.85189 1.19762 1.21037 1.21025 1.24157 0.98417 0.95610 1.11373 1.20362 0.90219 1.01218 1.02399 1.83932 0.97567 1.10344 1.75780 0.91022 0.91722 0.90745 0.84514 0.91531 0.91457 0.93370 0.93437 0.96619 0.96611 0.93119 0.91160 0.91825 0.89534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.38 36.01 0.37 -0.39 16 2 C -0.19 -2.49 6.51 -36.00 -0.23 -2.72 16 3 C -0.12 -1.84 9.83 -41.21 -0.41 -2.24 16 4 C -0.09 -1.44 5.06 -106.25 -0.54 -1.98 16 5 C -0.06 -1.12 4.84 -27.88 -0.14 -1.26 16 6 C -0.10 -2.14 5.08 -26.73 -0.14 -2.28 16 7 C 0.02 0.52 4.97 -27.88 -0.14 0.39 16 8 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 9 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 10 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 11 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 12 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 13 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 16 C -0.18 -2.70 6.51 -36.00 -0.23 -2.93 16 17 C -0.08 -1.11 9.79 36.01 0.35 -0.76 16 18 S 0.06 0.79 23.31 -107.50 -2.51 -1.72 16 19 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 20 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.14 1.86 8.06 -52.49 -0.42 1.44 16 23 H 0.07 1.16 8.11 -51.93 -0.42 0.73 16 24 H 0.07 1.16 7.52 -51.93 -0.39 0.77 16 25 H 0.05 1.01 7.28 -51.93 -0.38 0.63 16 26 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.09 1.26 6.50 -51.93 -0.34 0.93 16 LS Contribution 283.64 15.07 4.27 4.27 Total: -1.00 -30.60 283.64 -8.89 -39.49 By element: Atomic # 1 Polarization: 0.29 SS G_CDS: -4.87 Total: -4.58 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: -1.51 Total: -27.88 kcal Atomic # 7 Polarization: -27.22 SS G_CDS: 0.74 Total: -26.48 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -2.51 Total: -1.72 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.60 -8.89 -39.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065555.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.861 kcal (2) G-P(sol) polarization free energy of solvation -30.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds