Wall clock time and date at job start Sun Mar 29 2020 22:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99894 * 2 1 4 4 H 1.48503 * 109.46778 * 239.99544 * 3 2 1 5 5 H 1.48503 * 109.47134 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47402 * 119.99486 * 3 2 1 7 7 C 1.37876 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00356 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47592 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47482 * 179.97438 * 10 9 7 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 9 13 13 C 1.38177 * 119.98402 * 99.72202 * 12 11 10 14 14 C 1.38683 * 119.96688 * 179.76755 * 13 12 11 15 15 O 1.35951 * 120.02471 * 180.25744 * 14 13 12 16 16 C 1.38717 * 119.94250 * 0.51018 * 14 13 12 17 17 C 1.38128 * 119.97165 * 359.74637 * 16 14 13 18 18 C 1.38426 * 119.98716 * 279.99853 * 12 11 10 19 19 F 1.35099 * 119.96884 * 0.02562 * 18 12 11 20 20 H 0.96996 * 119.99885 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47210 * 59.99420 * 9 7 2 22 22 H 1.09001 * 109.46665 * 299.99679 * 9 7 2 23 23 H 1.09002 * 109.47103 * 59.99616 * 10 9 7 24 24 H 1.08998 * 109.46862 * 300.00428 * 10 9 7 25 25 H 1.09002 * 109.47153 * 59.99783 * 11 10 9 26 26 H 1.09001 * 109.46832 * 299.99974 * 11 10 9 27 27 H 1.08001 * 120.01178 * 0.02562 * 13 12 11 28 28 H 0.96702 * 113.99284 * 270.24929 * 15 14 13 29 29 H 1.08001 * 120.01766 * 179.72632 * 16 14 13 30 30 H 1.07994 * 119.99191 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4597 -6.1325 0.0005 13 6 2.7557 -6.7886 1.1800 14 6 3.6533 -7.8458 1.1782 15 8 3.9414 -8.4955 2.3371 16 6 4.2609 -8.2362 -0.0062 17 6 3.9672 -7.5752 -1.1829 18 6 3.0667 -6.5232 -1.1806 19 9 2.7810 -5.8769 -2.3321 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8896 22 1 0.6242 -2.5567 0.8903 23 1 2.8720 -3.6043 0.8905 24 1 2.8720 -3.6042 -0.8894 25 1 0.8534 -5.0451 -0.8886 26 1 0.8541 -5.0445 0.8914 27 1 2.2851 -6.4810 2.1021 28 1 4.6861 -8.1179 2.8250 29 1 4.9635 -9.0564 -0.0082 30 1 4.4403 -7.8786 -2.1051 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250066089.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:16 Heat of formation + Delta-G solvation = -109.371973 kcal Electronic energy + Delta-G solvation = -14533.634630 eV Core-core repulsion = 11820.766689 eV Total energy + Delta-G solvation = -2712.867941 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.86816 -40.65224 -37.88461 -36.28987 -34.51659 -32.11782 -30.34327 -28.51955 -25.57290 -23.77896 -22.83357 -21.82070 -19.04671 -18.57091 -18.31536 -17.83355 -16.75507 -16.48525 -16.13532 -15.61974 -15.21763 -14.70336 -14.62460 -14.28101 -13.97594 -13.77113 -13.16924 -12.97995 -12.78551 -12.54188 -12.40537 -12.33781 -11.64158 -11.52835 -11.33152 -11.11303 -10.56262 -9.94737 -9.41126 -8.20922 -6.32731 0.05207 0.18074 1.38990 1.42534 1.50577 2.39610 2.45051 3.11747 3.22610 3.32524 3.67575 3.77359 4.16602 4.19871 4.38112 4.43911 4.62458 4.79632 4.93190 4.98148 5.09121 5.17926 5.19856 5.30882 5.34762 5.49226 5.72195 5.77201 5.84140 6.23387 6.83333 6.84768 7.36457 8.90751 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.040479 B = 0.005423 C = 0.005188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.542464 B = 5161.710650 C = 5395.426204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.966 3.034 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.024 3.976 10 C -0.087 4.087 11 C -0.077 4.077 12 C -0.101 4.101 13 C -0.126 4.126 14 C 0.102 3.898 15 O -0.503 6.503 16 C -0.119 4.119 17 C -0.130 4.130 18 C 0.063 3.937 19 F -0.150 7.150 20 H 0.264 0.736 21 H -0.011 1.011 22 H -0.003 1.003 23 H 0.055 0.945 24 H 0.041 0.959 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.144 0.856 28 H 0.413 0.587 29 H 0.168 0.832 30 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.899 -16.669 1.803 19.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.790 3.210 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.585 4.585 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.125 4.125 11 C -0.114 4.114 12 C -0.102 4.102 13 C -0.144 4.144 14 C 0.057 3.943 15 O -0.316 6.316 16 C -0.138 4.138 17 C -0.149 4.149 18 C 0.043 3.957 19 F -0.129 7.129 20 H 0.073 0.927 21 H 0.008 0.992 22 H 0.015 0.985 23 H 0.073 0.927 24 H 0.060 0.940 25 H 0.081 0.919 26 H 0.099 0.901 27 H 0.161 0.839 28 H 0.272 0.728 29 H 0.185 0.815 30 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 9.280 -16.891 1.611 19.340 hybrid contribution 0.206 1.530 -0.177 1.554 sum 9.486 -15.361 1.434 18.111 Atomic orbital electron populations 1.70092 1.07818 1.27909 1.51509 1.25999 0.95802 1.03405 0.94586 0.85486 0.78297 0.77972 0.79211 1.19320 1.20608 1.18964 1.21666 0.93488 0.92481 1.50876 0.92377 1.19017 0.94389 0.92968 0.94933 1.21361 0.97930 0.92848 1.00312 1.20565 0.96266 0.91640 1.02977 1.19958 0.99404 0.98180 0.92649 1.21368 0.99871 0.95327 0.97832 1.18472 0.96529 0.92073 0.87214 1.84782 1.56787 1.56457 1.33587 1.21509 1.00564 1.01029 0.90654 1.21268 0.97777 0.94751 1.01055 1.17955 1.00569 0.95603 0.81527 1.91467 1.92596 1.80965 1.47897 0.92690 0.99248 0.98475 0.92673 0.93986 0.91927 0.90094 0.83861 0.72755 0.81484 0.82058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.92 13.29 21.45 0.28 -57.64 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 3 Si 0.97 44.99 29.54 68.60 2.03 47.01 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.55 -32.20 9.11 25.60 0.23 -31.97 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 9 C 0.02 1.31 4.97 29.84 0.15 1.46 16 10 C -0.09 -3.78 5.13 30.59 0.16 -3.62 16 11 C -0.08 -2.79 5.06 29.85 0.15 -2.64 16 12 C -0.10 -3.09 5.14 -19.83 -0.10 -3.19 16 13 C -0.13 -3.21 9.61 22.36 0.21 -2.99 16 14 C 0.10 2.15 6.70 22.49 0.15 2.30 16 15 O -0.50 -8.58 13.51 -93.00 -1.26 -9.84 16 16 C -0.12 -2.20 9.98 22.36 0.22 -1.98 16 17 C -0.13 -2.82 10.02 22.30 0.22 -2.60 16 18 C 0.06 1.85 7.24 22.37 0.16 2.01 16 19 F -0.15 -5.12 16.65 44.97 0.75 -4.37 16 20 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 21 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 22 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 23 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 24 H 0.04 1.86 8.14 -2.39 -0.02 1.85 16 25 H 0.06 2.36 7.94 -2.39 -0.02 2.34 16 26 H 0.08 2.76 8.01 -2.39 -0.02 2.74 16 27 H 0.14 3.39 8.04 -2.91 -0.02 3.37 16 28 H 0.41 3.02 9.06 -74.06 -0.67 2.35 16 29 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 30 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -69.80 270.52 4.30 -65.50 By element: Atomic # 1 Polarization: 1.63 SS G_CDS: 0.47 Total: 2.10 kcal Atomic # 6 Polarization: -44.80 SS G_CDS: 2.02 Total: -42.77 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: 0.28 Total: -57.64 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: -1.26 Total: -9.84 kcal Atomic # 9 Polarization: -5.12 SS G_CDS: 0.75 Total: -4.37 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -69.80 4.30 -65.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066089.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.869 kcal (2) G-P(sol) polarization free energy of solvation -69.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds