Wall clock time and date at job start Sun Mar 29 2020 22:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48495 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 299.99948 * 3 2 1 6 6 H 1.48501 * 109.47057 * 59.99929 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46947 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.46946 * 179.97438 * 11 10 9 13 13 C 1.38266 * 119.95302 * 269.72463 * 12 11 10 14 14 C 1.38254 * 120.12508 * 179.76559 * 13 12 11 15 15 C 1.38336 * 120.03062 * 0.51527 * 14 13 12 16 16 F 1.35102 * 120.05011 * 179.72300 * 15 14 13 17 17 C 1.38909 * 119.90280 * 359.73723 * 15 14 13 18 18 O 1.35955 * 120.06173 * 180.02562 * 17 15 14 19 19 C 1.38182 * 119.95231 * 90.00197 * 12 11 10 20 20 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 22 22 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 23 23 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 24 24 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 25 25 H 1.08992 * 109.47554 * 299.99696 * 11 10 9 26 26 H 1.08996 * 109.47261 * 60.00229 * 11 10 9 27 27 H 1.08001 * 119.93616 * 0.02562 * 13 12 11 28 28 H 1.08000 * 119.98374 * 180.23365 * 14 13 12 29 29 H 0.96695 * 114.00543 * 269.98332 * 18 17 15 30 30 H 1.08002 * 120.01520 * 359.95450 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4802 -4.9870 -0.0020 12 6 2.4595 -6.1325 -0.0024 13 6 2.9038 -6.6605 -1.2005 14 6 3.8059 -7.7082 -1.2051 15 6 4.2580 -8.2377 -0.0097 16 9 5.1352 -9.2652 -0.0137 17 6 3.8084 -7.7116 1.1948 18 8 4.2510 -8.2292 2.3715 19 6 2.9077 -6.6574 1.1947 20 1 -0.4849 0.8401 0.0004 21 1 0.6240 -2.5575 0.8880 22 1 0.6246 -2.5563 -0.8919 23 1 2.8725 -3.6039 -0.8910 24 1 2.8713 -3.6047 0.8890 25 1 0.8532 -5.0450 0.8876 26 1 0.8540 -5.0446 -0.8922 27 1 2.5486 -6.2510 -2.1346 28 1 4.1543 -8.1164 -2.1423 29 1 3.7075 -8.9527 2.7121 30 1 2.5570 -6.2464 2.1299 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250066242.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:42 Heat of formation + Delta-G solvation = -89.951599 kcal Electronic energy + Delta-G solvation = -14334.823456 eV Core-core repulsion = 11622.797646 eV Total energy + Delta-G solvation = -2712.025811 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.88330 -39.64624 -37.15606 -34.54384 -32.52936 -30.45792 -29.70460 -26.66179 -23.69599 -23.03619 -21.41418 -20.12551 -18.31530 -17.38614 -16.73858 -16.29983 -15.80024 -14.97548 -14.51068 -14.27918 -14.13026 -13.73107 -13.47264 -12.79299 -12.55688 -12.05485 -11.64374 -11.57069 -11.22046 -10.79953 -10.74442 -10.64756 -10.44937 -9.71837 -9.40109 -9.11575 -8.93877 -8.36187 -8.35589 -6.00784 -4.02947 1.04848 1.13990 3.30904 3.38506 3.42851 3.45254 3.90382 4.28934 4.46033 4.70676 4.92820 5.16000 5.29593 5.35298 5.53671 5.85036 5.91671 6.00315 6.02760 6.16517 6.31969 6.43366 6.70936 6.79621 6.84599 7.10089 7.46893 7.66852 7.80264 7.99406 8.42302 9.04488 9.61463 11.10539 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.050149 B = 0.004664 C = 0.004626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.197381 B = 6001.975945 C = 6051.108755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.020 3.980 10 C -0.104 4.104 11 C -0.086 4.086 12 C -0.057 4.057 13 C -0.099 4.099 14 C -0.137 4.137 15 C 0.055 3.945 16 F -0.140 7.140 17 C 0.073 3.927 18 O -0.489 6.489 19 C -0.117 4.117 20 H 0.260 0.740 21 H 0.016 0.984 22 H 0.017 0.983 23 H 0.050 0.950 24 H 0.049 0.951 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.137 0.863 28 H 0.136 0.864 29 H 0.389 0.611 30 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.355 -16.458 0.030 17.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.142 4.142 11 C -0.123 4.123 12 C -0.057 4.057 13 C -0.117 4.117 14 C -0.156 4.156 15 C 0.035 3.965 16 F -0.118 7.118 17 C 0.028 3.972 18 O -0.299 6.299 19 C -0.136 4.136 20 H 0.069 0.931 21 H 0.035 0.965 22 H 0.035 0.965 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.154 0.846 28 H 0.154 0.846 29 H 0.244 0.756 30 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.689 -15.960 -0.021 16.635 hybrid contribution 0.291 0.399 0.088 0.501 sum 4.980 -15.561 0.067 16.339 Atomic orbital electron populations 1.69977 1.06046 1.26471 1.51082 1.25020 0.94841 0.99253 0.95340 0.86554 0.80168 0.83824 0.77583 1.19735 1.21005 1.21009 1.21305 0.93110 0.91098 1.50311 0.92656 1.19131 0.93990 0.91314 0.97285 1.21652 0.99054 0.92762 1.00720 1.20845 0.95984 0.92469 1.02998 1.20206 0.97295 0.96200 0.92001 1.21036 0.96618 0.95358 0.98706 1.21064 0.99463 0.98493 0.96608 1.18073 0.94658 0.89455 0.94273 1.91464 1.66617 1.56369 1.97391 1.18429 0.97848 0.96781 0.84171 1.84884 1.54961 1.54583 1.35478 1.21305 0.96553 0.96237 0.99460 0.93075 0.96538 0.96513 0.93152 0.93186 0.91007 0.90881 0.84562 0.84567 0.75588 0.84305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 10 C -0.10 -2.08 5.13 -26.73 -0.14 -2.22 16 11 C -0.09 -1.35 5.34 -27.88 -0.15 -1.50 16 12 C -0.06 -0.79 5.13 -104.63 -0.54 -1.33 16 13 C -0.10 -1.25 9.69 -39.57 -0.38 -1.63 16 14 C -0.14 -1.65 10.02 -39.54 -0.40 -2.05 16 15 C 0.06 0.73 7.31 -39.30 -0.29 0.45 16 16 F -0.14 -1.92 17.11 2.25 0.04 -1.88 16 17 C 0.07 0.97 6.71 -39.18 -0.26 0.71 16 18 O -0.49 -5.90 13.37 -19.60 -0.26 -6.17 16 19 C -0.12 -1.58 9.64 -39.45 -0.38 -1.96 16 20 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 21 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 24 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 25 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 26 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 27 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 28 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 29 H 0.39 2.66 9.06 45.56 0.41 3.07 16 30 H 0.14 1.75 8.06 -52.49 -0.42 1.32 16 LS Contribution 271.17 15.07 4.09 4.09 Total: -1.00 -31.57 271.17 -6.43 -38.01 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: -2.93 Total: -1.96 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: -3.08 Total: -22.66 kcal Atomic # 7 Polarization: -26.81 SS G_CDS: 0.74 Total: -26.07 kcal Atomic # 8 Polarization: -5.90 SS G_CDS: -0.26 Total: -6.17 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.57 -6.43 -38.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066242.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.946 kcal (2) G-P(sol) polarization free energy of solvation -31.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds