Wall clock time and date at job start Sun Mar 29 2020 22:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30165 * 126.80856 * 2 1 4 4 O 1.20895 * 111.74510 * 179.97438 * 3 2 1 5 5 C 1.34267 * 111.64072 * 0.02562 * 4 3 2 6 6 C 1.35883 * 106.35119 * 359.74394 * 5 4 3 7 7 N 1.40705 * 128.05817 * 180.25659 * 6 5 4 8 8 C 1.34771 * 119.99762 * 0.14234 * 7 6 5 9 9 O 1.21310 * 120.00435 * 359.97438 * 8 7 6 10 10 C 1.50704 * 120.00185 * 180.02562 * 8 7 6 11 11 H 1.09007 * 109.46556 * 300.00135 * 10 8 7 12 12 C 1.52998 * 109.47052 * 59.99447 * 10 8 7 13 13 C 1.50689 * 109.47521 * 179.97438 * 10 8 7 14 14 H 1.08003 * 120.00214 * 359.97438 * 13 10 8 15 15 C 1.37881 * 120.00249 * 179.97438 * 13 10 8 16 16 N 1.31516 * 119.99700 * 0.02562 * 15 13 10 17 17 Si 1.86794 * 120.00121 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.47454 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46884 * 120.00351 * 17 15 13 20 20 H 1.48504 * 109.47322 * 240.00239 * 17 15 13 21 21 H 1.09001 * 109.46953 * 90.02326 * 1 2 3 22 22 H 1.09000 * 109.47318 * 210.01924 * 1 2 3 23 23 H 1.09000 * 109.47161 * 330.02555 * 1 2 3 24 24 H 1.07998 * 126.81717 * 180.02562 * 5 4 3 25 25 H 0.96996 * 119.99738 * 180.14255 * 7 6 5 26 26 H 1.08999 * 109.47299 * 180.02562 * 12 10 8 27 27 H 1.09004 * 109.47420 * 300.00332 * 12 10 8 28 28 H 1.09003 * 109.47136 * 60.00172 * 12 10 8 29 29 H 0.96997 * 119.99870 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0422 0.0000 4 8 3.4543 0.7280 0.0005 5 6 3.6081 -0.6059 0.0004 6 6 2.3567 -1.1352 0.0055 7 7 1.9895 -2.4935 0.0124 8 6 2.9403 -3.4486 0.0175 9 8 4.1128 -3.1373 0.0156 10 6 2.5471 -4.9034 0.0243 11 1 1.9558 -5.1157 0.9150 12 6 1.7183 -5.2135 -1.2238 13 6 3.7875 -5.7591 0.0283 14 1 4.7631 -5.2958 0.0258 15 6 3.6770 -7.1334 0.0353 16 7 2.4889 -7.6975 0.0379 17 14 5.2146 -8.1941 0.0397 18 1 6.4171 -7.3228 0.0351 19 1 5.2252 -9.0454 1.2565 20 1 5.2238 -9.0575 -1.1686 21 1 -0.3633 -0.0004 -1.0277 22 1 -0.3634 -0.8898 0.5141 23 1 -0.3633 0.8902 0.5134 24 1 4.5412 -1.1498 0.0011 25 1 1.0520 -2.7424 0.0135 26 1 1.4335 -6.2656 -1.2187 27 1 0.8210 -4.5946 -1.2272 28 1 2.3095 -5.0011 -2.1146 29 1 2.4112 -8.6644 0.0424 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350756863.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:30 Heat of formation + Delta-G solvation = 14.325331 kcal Electronic energy + Delta-G solvation = -15150.758204 eV Core-core repulsion = 12463.174142 eV Total energy + Delta-G solvation = -2687.584062 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.65504 -39.30095 -35.42068 -33.95375 -33.26634 -31.11272 -29.84357 -28.55620 -25.27600 -23.87488 -21.77094 -21.49364 -19.20452 -17.97543 -17.36675 -16.55301 -15.94256 -15.66230 -14.59800 -14.38879 -13.81050 -13.39091 -13.16884 -13.07669 -12.72416 -12.39773 -11.77777 -11.21773 -11.09719 -11.08687 -10.83804 -10.74039 -10.39066 -10.07543 -9.60671 -9.11282 -8.94941 -8.48184 -8.06920 -6.14605 -4.18757 1.72346 2.31104 3.14351 3.26499 3.34740 3.42933 3.54571 3.87054 4.33247 4.41269 4.59540 5.15968 5.19610 5.41847 5.49210 5.63786 5.86894 6.03919 6.14043 6.46296 6.65972 6.74021 6.85911 7.29715 7.59469 7.76885 7.94458 8.17732 8.43813 8.82535 8.90972 9.47558 10.93087 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.052184 B = 0.006660 C = 0.006017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.438855 B = 4203.455029 C = 4651.989846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.007 4.007 3 N -0.362 5.362 4 O 0.094 5.906 5 C -0.085 4.085 6 C 0.041 3.959 7 N -0.649 5.649 8 C 0.520 3.480 9 O -0.525 6.525 10 C 0.035 3.965 11 H 0.058 0.942 12 C -0.135 4.135 13 C -0.505 4.505 14 H 0.077 0.923 15 C 0.060 3.940 16 N -0.895 5.895 17 Si 0.902 3.098 18 H -0.270 1.270 19 H -0.284 1.284 20 H -0.284 1.284 21 H 0.079 0.921 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.234 0.766 25 H 0.412 0.588 26 H 0.097 0.903 27 H 0.013 0.987 28 H 0.034 0.966 29 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.771 9.704 -0.412 10.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.168 4.168 3 N -0.068 5.068 4 O 0.029 5.971 5 C -0.169 4.169 6 C -0.059 4.059 7 N -0.297 5.297 8 C 0.312 3.688 9 O -0.399 6.399 10 C 0.014 3.986 11 H 0.076 0.924 12 C -0.193 4.193 13 C -0.544 4.544 14 H 0.095 0.905 15 C -0.141 4.141 16 N -0.534 5.534 17 Si 0.729 3.271 18 H -0.195 1.195 19 H -0.210 1.210 20 H -0.210 1.210 21 H 0.098 0.902 22 H 0.097 0.903 23 H 0.096 0.904 24 H 0.250 0.750 25 H 0.248 0.752 26 H 0.116 0.884 27 H 0.032 0.968 28 H 0.053 0.947 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.203 10.986 -0.409 11.770 hybrid contribution 0.159 -1.680 -0.005 1.687 sum -4.044 9.306 -0.414 10.155 Atomic orbital electron populations 1.20114 0.85948 1.03644 1.03275 1.23300 0.98735 0.87869 1.06897 1.73721 0.89900 1.23890 1.19260 1.84808 1.20623 1.23412 1.68222 1.26243 1.01003 0.81780 1.07837 1.18856 0.92931 0.86785 1.07376 1.43595 1.11474 1.00785 1.73797 1.22446 0.84729 0.89171 0.72488 1.90431 1.18914 1.82733 1.47870 1.18906 0.98671 0.83710 0.97290 0.92394 1.21794 0.96017 1.04448 0.97087 1.21139 0.92296 0.90360 1.50562 0.90520 1.24948 0.96450 0.97916 0.94811 1.69865 1.22151 1.10592 1.50773 0.86360 0.83133 0.80029 0.77530 1.19479 1.20973 1.20969 0.90248 0.90330 0.90419 0.74970 0.75220 0.88439 0.96812 0.94699 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.75 10.48 36.01 0.38 -0.38 15 2 C -0.01 -0.10 7.34 -81.94 -0.60 -0.71 15 3 N -0.36 -5.78 12.06 33.56 0.40 -5.38 15 4 O 0.09 1.51 11.20 16.58 0.19 1.69 15 5 C -0.08 -1.42 11.17 29.89 0.33 -1.08 15 6 C 0.04 0.68 7.16 -83.27 -0.60 0.08 15 7 N -0.65 -11.02 5.36 -9.64 -0.05 -11.07 15 8 C 0.52 11.06 7.12 -10.99 -0.08 10.98 15 9 O -0.53 -12.37 12.87 5.53 0.07 -12.30 15 10 C 0.04 0.82 2.64 -92.93 -0.25 0.58 15 11 H 0.06 1.38 8.14 -51.93 -0.42 0.96 15 12 C -0.14 -2.91 8.86 37.16 0.33 -2.58 15 13 C -0.51 -13.58 8.37 -34.44 -0.29 -13.87 15 14 H 0.08 2.17 6.75 -52.48 -0.35 1.81 15 15 C 0.06 1.59 5.30 -17.82 -0.09 1.50 15 16 N -0.89 -24.07 11.32 55.43 0.63 -23.44 15 17 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 15 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 15 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 21 H 0.08 0.73 8.14 -51.93 -0.42 0.31 15 22 H 0.08 0.70 8.08 -51.93 -0.42 0.28 15 23 H 0.08 0.73 8.14 -51.93 -0.42 0.31 15 24 H 0.23 3.97 6.15 -52.49 -0.32 3.65 15 25 H 0.41 5.78 8.19 -40.82 -0.33 5.44 15 26 H 0.10 2.32 6.07 -51.93 -0.32 2.01 15 27 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 15 28 H 0.03 0.75 8.14 -51.93 -0.42 0.33 15 29 H 0.26 6.73 8.31 -40.82 -0.34 6.39 15 LS Contribution 255.81 15.07 3.85 3.85 Total: -1.00 -29.27 255.81 -3.76 -33.03 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -2.96 Total: 3.09 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -0.86 Total: -5.48 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.98 Total: -39.89 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.26 Total: -10.60 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -29.27 -3.76 -33.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350756863.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.352 kcal (2) G-P(sol) polarization free energy of solvation -29.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds