Wall clock time and date at job start Sun Mar 29 2020 22:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30165 * 126.80856 * 2 1 4 4 O 1.20895 * 111.74510 * 179.97438 * 3 2 1 5 5 C 1.34267 * 111.64072 * 0.02562 * 4 3 2 6 6 C 1.35883 * 106.35119 * 359.74394 * 5 4 3 7 7 N 1.40705 * 128.05817 * 180.25659 * 6 5 4 8 8 C 1.34771 * 119.99762 * 0.14234 * 7 6 5 9 9 O 1.21310 * 120.00435 * 359.97438 * 8 7 6 10 10 C 1.50704 * 120.00185 * 180.02562 * 8 7 6 11 11 H 1.09007 * 109.46556 * 300.00135 * 10 8 7 12 12 C 1.52998 * 109.47052 * 59.99447 * 10 8 7 13 13 C 1.50689 * 109.47521 * 179.97438 * 10 8 7 14 14 H 1.08003 * 120.00214 * 359.97438 * 13 10 8 15 15 C 1.37881 * 120.00249 * 179.97438 * 13 10 8 16 16 N 1.31516 * 119.99700 * 0.02562 * 15 13 10 17 17 Si 1.86794 * 120.00121 * 179.97438 * 15 13 10 18 18 H 1.48500 * 109.47454 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.46884 * 120.00351 * 17 15 13 20 20 H 1.48504 * 109.47322 * 240.00239 * 17 15 13 21 21 H 1.09001 * 109.46953 * 90.02326 * 1 2 3 22 22 H 1.09000 * 109.47318 * 210.01924 * 1 2 3 23 23 H 1.09000 * 109.47161 * 330.02555 * 1 2 3 24 24 H 1.07998 * 126.81717 * 180.02562 * 5 4 3 25 25 H 0.96996 * 119.99738 * 180.14255 * 7 6 5 26 26 H 1.08999 * 109.47299 * 180.02562 * 12 10 8 27 27 H 1.09004 * 109.47420 * 300.00332 * 12 10 8 28 28 H 1.09003 * 109.47136 * 60.00172 * 12 10 8 29 29 H 0.96997 * 119.99870 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0422 0.0000 4 8 3.4543 0.7280 0.0005 5 6 3.6081 -0.6059 0.0004 6 6 2.3567 -1.1352 0.0055 7 7 1.9895 -2.4935 0.0124 8 6 2.9403 -3.4486 0.0175 9 8 4.1128 -3.1373 0.0156 10 6 2.5471 -4.9034 0.0243 11 1 1.9558 -5.1157 0.9150 12 6 1.7183 -5.2135 -1.2238 13 6 3.7875 -5.7591 0.0283 14 1 4.7631 -5.2958 0.0258 15 6 3.6770 -7.1334 0.0353 16 7 2.4889 -7.6975 0.0379 17 14 5.2146 -8.1941 0.0397 18 1 6.4171 -7.3228 0.0351 19 1 5.2252 -9.0454 1.2565 20 1 5.2238 -9.0575 -1.1686 21 1 -0.3633 -0.0004 -1.0277 22 1 -0.3634 -0.8898 0.5141 23 1 -0.3633 0.8902 0.5134 24 1 4.5412 -1.1498 0.0011 25 1 1.0520 -2.7424 0.0135 26 1 1.4335 -6.2656 -1.2187 27 1 0.8210 -4.5946 -1.2272 28 1 2.3095 -5.0011 -2.1146 29 1 2.4112 -8.6644 0.0424 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350756863.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:30 Heat of formation + Delta-G solvation = -4.907312 kcal Electronic energy + Delta-G solvation = -15151.592194 eV Core-core repulsion = 12463.174142 eV Total energy + Delta-G solvation = -2688.418052 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.89641 -40.92862 -36.81741 -35.85304 -34.57981 -32.82582 -31.35793 -29.53339 -27.22326 -25.46627 -23.33379 -22.73276 -20.78652 -19.34926 -18.61241 -18.34295 -17.50813 -17.29451 -16.43011 -16.03847 -15.25393 -14.68490 -14.56297 -14.22118 -14.07789 -13.59225 -13.40970 -12.98235 -12.76910 -12.62300 -12.50376 -12.30453 -12.18330 -12.02367 -11.05475 -10.79880 -10.72782 -10.43602 -9.45489 -8.16514 -6.26552 0.42989 1.00666 1.41072 1.44363 1.55765 1.75112 1.95265 2.42960 2.59111 3.14487 3.18951 3.45444 3.94112 4.24350 4.51905 4.68329 4.70831 4.74058 4.84226 4.91196 4.99220 5.14280 5.43305 5.47537 5.73918 5.90633 6.16299 6.48820 6.81973 7.16111 7.23485 7.42913 8.89511 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.052184 B = 0.006660 C = 0.006017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.438855 B = 4203.455029 C = 4651.989846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.011 3.989 3 N -0.375 5.375 4 O 0.088 5.912 5 C -0.086 4.086 6 C 0.021 3.979 7 N -0.629 5.629 8 C 0.523 3.477 9 O -0.556 6.556 10 C 0.032 3.968 11 H 0.052 0.948 12 C -0.124 4.124 13 C -0.529 4.529 14 H 0.053 0.947 15 C 0.023 3.977 16 N -0.909 5.909 17 Si 0.954 3.046 18 H -0.278 1.278 19 H -0.277 1.277 20 H -0.276 1.276 21 H 0.097 0.903 22 H 0.097 0.903 23 H 0.091 0.909 24 H 0.226 0.774 25 H 0.428 0.572 26 H 0.074 0.926 27 H 0.056 0.944 28 H 0.025 0.975 29 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.132 10.164 -0.545 11.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.151 4.151 3 N -0.084 5.084 4 O 0.026 5.974 5 C -0.170 4.170 6 C -0.078 4.078 7 N -0.277 5.277 8 C 0.314 3.686 9 O -0.433 6.433 10 C 0.011 3.989 11 H 0.070 0.930 12 C -0.183 4.183 13 C -0.568 4.568 14 H 0.072 0.928 15 C -0.177 4.177 16 N -0.548 5.548 17 Si 0.780 3.220 18 H -0.203 1.203 19 H -0.202 1.202 20 H -0.202 1.202 21 H 0.116 0.884 22 H 0.115 0.885 23 H 0.109 0.891 24 H 0.243 0.757 25 H 0.267 0.733 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.044 0.956 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.587 11.465 -0.542 12.765 hybrid contribution 0.544 -1.757 0.048 1.840 sum -5.043 9.708 -0.494 10.951 Atomic orbital electron populations 1.20381 0.82669 1.05283 1.04949 1.23887 1.00522 0.86332 1.04313 1.73728 0.89906 1.24428 1.20326 1.84812 1.21011 1.22800 1.68731 1.26206 1.01183 0.82312 1.07310 1.18998 0.93495 0.86752 1.08589 1.43102 1.11526 1.00471 1.72602 1.21960 0.84794 0.89173 0.72683 1.90427 1.20242 1.83130 1.49514 1.18809 0.97465 0.84838 0.97806 0.93033 1.21624 0.97233 1.03757 0.95639 1.21302 0.92801 0.91375 1.51303 0.92826 1.25542 0.98849 0.98772 0.94545 1.69936 1.23172 1.10929 1.50794 0.85560 0.79998 0.78518 0.77910 1.20295 1.20217 1.20172 0.88406 0.88463 0.89070 0.75746 0.73282 0.90755 0.92556 0.95609 0.92546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.28 10.48 71.24 0.75 -0.54 15 2 C 0.01 0.30 7.34 43.69 0.32 0.62 15 3 N -0.38 -11.34 12.06 -48.97 -0.59 -11.94 15 4 O 0.09 2.74 11.20 69.50 0.78 3.52 15 5 C -0.09 -2.85 11.17 67.27 0.75 -2.10 15 6 C 0.02 0.67 7.16 38.05 0.27 0.95 15 7 N -0.63 -20.18 5.36 -302.78 -1.62 -21.80 15 8 C 0.52 21.97 7.12 87.66 0.62 22.59 15 9 O -0.56 -26.52 12.87 -3.12 -0.04 -26.56 15 10 C 0.03 1.48 2.64 -12.29 -0.03 1.45 15 11 H 0.05 2.44 8.14 -2.38 -0.02 2.42 15 12 C -0.12 -5.20 8.86 71.98 0.64 -4.56 15 13 C -0.53 -28.80 8.37 25.60 0.21 -28.58 15 14 H 0.05 3.11 6.75 -2.91 -0.02 3.09 15 15 C 0.02 1.20 5.30 84.66 0.45 1.65 15 16 N -0.91 -48.59 11.32 21.45 0.24 -48.35 15 17 Si 0.95 43.13 29.54 68.60 2.03 45.16 15 18 H -0.28 -12.81 7.11 99.48 0.71 -12.10 15 19 H -0.28 -12.12 7.11 99.48 0.71 -11.41 15 20 H -0.28 -12.08 7.11 99.48 0.71 -11.38 15 21 H 0.10 1.37 8.14 -2.39 -0.02 1.36 15 22 H 0.10 1.31 8.08 -2.39 -0.02 1.29 15 23 H 0.09 1.35 8.14 -2.39 -0.02 1.33 15 24 H 0.23 7.83 6.15 -2.91 -0.02 7.81 15 25 H 0.43 10.71 8.19 -92.71 -0.76 9.95 15 26 H 0.07 3.48 6.07 -2.39 -0.01 3.47 15 27 H 0.06 1.82 7.57 -2.38 -0.02 1.80 15 28 H 0.02 1.08 8.14 -2.39 -0.02 1.06 15 29 H 0.27 13.46 8.31 -92.71 -0.77 12.69 15 Total: -1.00 -62.30 255.81 5.20 -57.10 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: 0.42 Total: 11.39 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: 3.98 Total: -8.52 kcal Atomic # 7 Polarization: -80.12 SS G_CDS: -1.97 Total: -82.09 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: 0.74 Total: -23.04 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -62.30 5.20 -57.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350756863.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.188 kcal (2) G-P(sol) polarization free energy of solvation -62.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds