Wall clock time and date at job start Sun Mar 29 2020 22:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46428 * 2 1 4 4 S 1.81394 * 109.47226 * 240.00296 * 2 1 3 5 5 C 1.81402 * 103.00306 * 64.99548 * 4 2 1 6 6 C 1.50695 * 109.47126 * 180.02562 * 5 4 2 7 7 H 1.07993 * 120.00346 * 359.97438 * 6 5 4 8 8 C 1.37883 * 119.99871 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99891 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00033 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47287 * 59.99585 * 10 8 6 12 12 H 1.48495 * 109.47342 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.46939 * 299.99879 * 10 8 6 14 14 C 1.50696 * 109.47467 * 119.99776 * 2 1 3 15 15 C 1.38387 * 120.00300 * 125.02816 * 14 2 1 16 16 N 1.32127 * 119.99994 * 179.72464 * 15 14 2 17 17 C 1.32149 * 119.99872 * 0.50887 * 16 15 14 18 18 C 1.38346 * 120.00371 * 359.48627 * 17 16 15 19 19 N 1.32127 * 120.00369 * 305.00121 * 14 2 1 20 20 H 1.09004 * 109.46428 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47335 * 299.99736 * 1 2 3 22 22 H 1.08991 * 109.47415 * 60.00497 * 1 2 3 23 23 H 1.09002 * 109.47016 * 300.00128 * 5 4 2 24 24 H 1.09000 * 109.46939 * 60.00040 * 5 4 2 25 25 H 0.97002 * 119.99709 * 180.02562 * 9 8 6 26 26 H 1.07999 * 119.99913 * 359.97438 * 15 14 2 27 27 H 1.08002 * 120.00163 * 179.77166 * 17 16 15 28 28 H 1.07999 * 120.00349 * 180.27731 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 16 2.1347 -0.8550 -1.4811 5 6 1.5664 0.2154 -2.8309 6 6 1.9973 -0.3695 -4.1512 7 1 2.5574 -1.2925 -4.1759 8 6 1.6774 0.2744 -5.3277 9 7 0.9957 1.3987 -5.2976 10 14 2.2109 -0.4508 -6.9644 11 1 1.6187 -1.8034 -7.1231 12 1 1.7458 0.4254 -8.0693 13 1 3.6921 -0.5516 -7.0018 14 6 2.0324 -0.7103 1.2304 15 6 2.9116 -1.7717 1.1062 16 7 3.3563 -2.3910 2.1853 17 6 2.9537 -2.0033 3.3827 18 6 2.0748 -0.9421 3.5071 19 7 1.6339 -0.3194 2.4280 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8899 23 1 0.4791 0.2881 -2.8037 24 1 2.0000 1.2085 -2.7142 25 1 0.7703 1.8515 -6.1254 26 1 3.2374 -2.0913 0.1274 27 1 3.3143 -2.5118 4.2647 28 1 1.7492 -0.6223 4.4859 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473041856.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:53 Heat of formation + Delta-G solvation = 34.042508 kcal Electronic energy + Delta-G solvation = -12511.014127 eV Core-core repulsion = 10267.037937 eV Total energy + Delta-G solvation = -2243.976190 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.068 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.01638 -34.94742 -33.42705 -33.19238 -30.24204 -28.47130 -25.22873 -24.29152 -23.16532 -21.68047 -17.61028 -17.06074 -16.61309 -15.94739 -15.32431 -14.90906 -14.40301 -14.02156 -13.41056 -12.89337 -12.57157 -12.34612 -12.19665 -11.69094 -11.52128 -11.26517 -11.07065 -10.85278 -10.72584 -9.94587 -9.63853 -9.21830 -9.17246 -8.71350 -8.63637 -6.84901 -6.22179 -4.26706 0.81244 1.17122 2.32648 3.26961 3.30335 3.34149 3.65396 3.72854 4.04265 4.32691 4.42863 4.54429 4.86791 5.15099 5.18792 5.23483 5.36806 5.61764 5.65919 6.01822 6.14194 6.36723 6.48154 7.05790 7.08317 7.30804 7.71839 7.81672 7.97193 8.74681 9.36562 10.88983 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.062618 B = 0.005903 C = 0.005487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.048162 B = 4742.101090 C = 5102.109402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.016 4.016 3 H 0.102 0.898 4 S -0.288 6.288 5 C 0.091 3.909 6 C -0.515 4.515 7 H 0.067 0.933 8 C 0.067 3.933 9 N -0.892 5.892 10 Si 0.907 3.093 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.273 1.273 14 C 0.109 3.891 15 C 0.067 3.933 16 N -0.437 5.437 17 C 0.034 3.966 18 C 0.047 3.953 19 N -0.436 5.436 20 H 0.061 0.939 21 H 0.064 0.936 22 H 0.070 0.930 23 H 0.040 0.960 24 H 0.037 0.963 25 H 0.266 0.734 26 H 0.185 0.815 27 H 0.167 0.833 28 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.857 -3.285 14.100 14.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.146 4.146 3 H 0.120 0.880 4 S -0.061 6.061 5 C -0.055 4.055 6 C -0.554 4.554 7 H 0.086 0.914 8 C -0.138 4.138 9 N -0.530 5.530 10 Si 0.734 3.266 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.199 1.199 14 C -0.032 4.032 15 C -0.093 4.093 16 N -0.151 5.151 17 C -0.125 4.125 18 C -0.113 4.113 19 N -0.151 5.151 20 H 0.080 0.920 21 H 0.083 0.917 22 H 0.089 0.911 23 H 0.059 0.941 24 H 0.055 0.945 25 H 0.076 0.924 26 H 0.201 0.799 27 H 0.184 0.816 28 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 1.365 -4.077 13.932 14.580 hybrid contribution -0.444 0.910 -0.726 1.245 sum 0.921 -3.168 13.206 13.612 Atomic orbital electron populations 1.21935 0.91791 1.02889 1.02725 1.21769 0.99584 1.01336 0.91879 0.88018 1.86369 1.76405 1.42204 1.01149 1.21156 0.98927 0.94547 0.90869 1.20623 1.36646 1.09345 0.88780 0.91441 1.24952 0.94740 0.94778 0.99291 1.69940 1.38289 1.16485 1.28294 0.86407 0.79211 0.79040 0.81976 1.19882 1.21071 1.19880 1.21736 0.94114 0.94303 0.93002 1.23943 0.93837 0.92551 0.98985 1.68537 1.21063 1.26760 0.98746 1.23755 0.96086 0.96115 0.96569 1.23706 0.95508 0.93917 0.98207 1.68144 1.21363 1.27358 0.98264 0.91984 0.91704 0.91077 0.94149 0.94477 0.92395 0.79862 0.81622 0.81537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.17 8.96 37.16 0.33 -1.84 15 2 C -0.02 -0.27 3.26 -27.89 -0.09 -0.37 15 3 H 0.10 1.77 8.14 -51.92 -0.42 1.34 15 4 S -0.29 -5.95 18.58 -107.50 -2.00 -7.95 15 5 C 0.09 2.29 5.39 36.00 0.19 2.48 15 6 C -0.51 -14.15 9.13 -34.44 -0.31 -14.46 15 7 H 0.07 1.85 7.71 -52.49 -0.40 1.44 15 8 C 0.07 1.83 5.46 -17.82 -0.10 1.73 15 9 N -0.89 -25.50 13.29 55.43 0.74 -24.77 15 10 Si 0.91 21.08 29.54 -169.99 -5.02 16.05 15 11 H -0.27 -6.27 7.11 56.52 0.40 -5.87 15 12 H -0.29 -6.52 7.11 56.52 0.40 -6.12 15 13 H -0.27 -6.27 7.11 56.52 0.40 -5.87 15 14 C 0.11 1.77 6.16 -82.41 -0.51 1.26 15 15 C 0.07 1.08 10.32 -17.37 -0.18 0.90 15 16 N -0.44 -6.47 10.50 -13.06 -0.14 -6.60 15 17 C 0.03 0.39 11.22 -17.38 -0.20 0.20 15 18 C 0.05 0.53 11.22 -17.37 -0.20 0.34 15 19 N -0.44 -6.42 10.06 -9.29 -0.09 -6.51 15 20 H 0.06 1.00 8.14 -51.93 -0.42 0.58 15 21 H 0.06 0.95 7.96 -51.93 -0.41 0.54 15 22 H 0.07 1.22 6.92 -51.93 -0.36 0.86 15 23 H 0.04 1.04 7.14 -51.92 -0.37 0.67 15 24 H 0.04 0.97 8.14 -51.92 -0.42 0.55 15 25 H 0.27 7.19 8.31 -40.82 -0.34 6.85 15 26 H 0.18 3.08 5.95 -47.02 -0.28 2.80 15 27 H 0.17 1.23 8.06 -52.49 -0.42 0.80 15 28 H 0.17 1.23 8.06 -52.49 -0.42 0.80 15 LS Contribution 258.95 15.07 3.90 3.90 Total: -1.00 -29.51 258.95 -6.74 -36.25 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -3.08 Total: -0.62 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -1.05 Total: -9.75 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.51 Total: -37.88 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -5.95 SS G_CDS: -2.00 Total: -7.95 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.51 -6.74 -36.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473041856.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.289 kcal (2) G-P(sol) polarization free energy of solvation -29.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds