Wall clock time and date at job start Sun Mar 29 2020 22:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46428 * 2 1 4 4 S 1.81394 * 109.47226 * 240.00296 * 2 1 3 5 5 C 1.81402 * 103.00306 * 64.99548 * 4 2 1 6 6 C 1.50695 * 109.47126 * 180.02562 * 5 4 2 7 7 H 1.07993 * 120.00346 * 359.97438 * 6 5 4 8 8 C 1.37883 * 119.99871 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99891 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00033 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47287 * 59.99585 * 10 8 6 12 12 H 1.48495 * 109.47342 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.46939 * 299.99879 * 10 8 6 14 14 C 1.50696 * 109.47467 * 119.99776 * 2 1 3 15 15 C 1.38387 * 120.00300 * 125.02816 * 14 2 1 16 16 N 1.32127 * 119.99994 * 179.72464 * 15 14 2 17 17 C 1.32149 * 119.99872 * 0.50887 * 16 15 14 18 18 C 1.38346 * 120.00371 * 359.48627 * 17 16 15 19 19 N 1.32127 * 120.00369 * 305.00121 * 14 2 1 20 20 H 1.09004 * 109.46428 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47335 * 299.99736 * 1 2 3 22 22 H 1.08991 * 109.47415 * 60.00497 * 1 2 3 23 23 H 1.09002 * 109.47016 * 300.00128 * 5 4 2 24 24 H 1.09000 * 109.46939 * 60.00040 * 5 4 2 25 25 H 0.97002 * 119.99709 * 180.02562 * 9 8 6 26 26 H 1.07999 * 119.99913 * 359.97438 * 15 14 2 27 27 H 1.08002 * 120.00163 * 179.77166 * 17 16 15 28 28 H 1.07999 * 120.00349 * 180.27731 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 16 2.1347 -0.8550 -1.4811 5 6 1.5664 0.2154 -2.8309 6 6 1.9973 -0.3695 -4.1512 7 1 2.5574 -1.2925 -4.1759 8 6 1.6774 0.2744 -5.3277 9 7 0.9957 1.3987 -5.2976 10 14 2.2109 -0.4508 -6.9644 11 1 1.6187 -1.8034 -7.1231 12 1 1.7458 0.4254 -8.0693 13 1 3.6921 -0.5516 -7.0018 14 6 2.0324 -0.7103 1.2304 15 6 2.9116 -1.7717 1.1062 16 7 3.3563 -2.3910 2.1853 17 6 2.9537 -2.0033 3.3827 18 6 2.0748 -0.9421 3.5071 19 7 1.6339 -0.3194 2.4280 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8899 23 1 0.4791 0.2881 -2.8037 24 1 2.0000 1.2085 -2.7142 25 1 0.7703 1.8515 -6.1254 26 1 3.2374 -2.0913 0.1274 27 1 3.3143 -2.5118 4.2647 28 1 1.7492 -0.6223 4.4859 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473041856.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:52 Heat of formation + Delta-G solvation = 15.234612 kcal Electronic energy + Delta-G solvation = -12511.829698 eV Core-core repulsion = 10267.037937 eV Total energy + Delta-G solvation = -2244.791762 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.068 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.09153 -36.14219 -35.29094 -34.57076 -31.50612 -30.45348 -26.39537 -25.38024 -25.22214 -22.97031 -18.88057 -18.58952 -17.99288 -17.39919 -16.74127 -16.48095 -15.81987 -15.17471 -14.97302 -14.49037 -14.25016 -14.13691 -13.62898 -13.25683 -12.77209 -12.64810 -12.57417 -12.52159 -12.21461 -11.81476 -11.56062 -10.77229 -10.72994 -10.25072 -9.99694 -8.56277 -8.32466 -6.45329 -0.23951 0.10321 0.75830 1.41286 1.43946 1.52472 1.88324 2.37484 2.67044 2.91934 3.02594 3.38985 3.52513 3.76539 3.95729 4.05433 4.34118 4.42233 4.60475 4.70544 4.78837 4.95060 4.96803 5.12862 5.39948 5.57896 5.89567 6.25651 6.61875 6.76255 7.22555 8.79300 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.062618 B = 0.005903 C = 0.005487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.048162 B = 4742.101090 C = 5102.109402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.006 4.006 3 H 0.097 0.903 4 S -0.279 6.279 5 C 0.090 3.910 6 C -0.537 4.537 7 H 0.064 0.936 8 C 0.016 3.984 9 N -0.924 5.924 10 Si 0.974 3.026 11 H -0.266 1.266 12 H -0.277 1.277 13 H -0.267 1.267 14 C 0.091 3.909 15 C 0.047 3.953 16 N -0.456 5.456 17 C 0.049 3.951 18 C 0.060 3.940 19 N -0.450 5.450 20 H 0.061 0.939 21 H 0.084 0.916 22 H 0.054 0.946 23 H 0.022 0.978 24 H 0.014 0.986 25 H 0.270 0.730 26 H 0.166 0.834 27 H 0.214 0.786 28 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.173 -4.140 16.102 16.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.136 4.136 3 H 0.115 0.885 4 S -0.052 6.052 5 C -0.057 4.057 6 C -0.576 4.576 7 H 0.082 0.918 8 C -0.185 4.185 9 N -0.563 5.563 10 Si 0.798 3.202 11 H -0.191 1.191 12 H -0.202 1.202 13 H -0.191 1.191 14 C -0.048 4.048 15 C -0.111 4.111 16 N -0.171 5.171 17 C -0.112 4.112 18 C -0.101 4.101 19 N -0.166 5.166 20 H 0.080 0.920 21 H 0.103 0.897 22 H 0.073 0.927 23 H 0.040 0.960 24 H 0.032 0.968 25 H 0.079 0.921 26 H 0.183 0.817 27 H 0.230 0.770 28 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 1.683 -4.934 15.893 16.727 hybrid contribution -0.530 1.153 -1.051 1.647 sum 1.153 -3.782 14.843 15.360 Atomic orbital electron populations 1.21847 0.90988 1.02871 1.02787 1.21706 1.00175 1.00768 0.90934 0.88481 1.86184 1.76463 1.41263 1.01285 1.20839 0.97640 0.94478 0.92698 1.20964 1.36921 1.09463 0.90273 0.91800 1.25879 0.94499 0.95037 1.03068 1.70048 1.39149 1.17676 1.29421 0.85358 0.79037 0.78485 0.77366 1.19103 1.20228 1.19142 1.21343 0.95417 0.94951 0.93112 1.23606 0.94978 0.93440 0.99077 1.68535 1.21720 1.27215 0.99603 1.24586 0.94538 0.95500 0.96590 1.24546 0.93949 0.92745 0.98900 1.68131 1.21976 1.28136 0.98372 0.92008 0.89724 0.92720 0.95958 0.96774 0.92093 0.81716 0.76954 0.76763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.10 8.96 71.98 0.65 -3.46 15 2 C -0.01 -0.20 3.26 29.85 0.10 -0.11 15 3 H 0.10 3.46 8.14 -2.39 -0.02 3.44 15 4 S -0.28 -11.94 18.58 -56.49 -1.05 -12.99 15 5 C 0.09 4.76 5.39 71.23 0.38 5.14 15 6 C -0.54 -30.43 9.13 25.60 0.23 -30.20 15 7 H 0.06 3.58 7.71 -2.91 -0.02 3.55 15 8 C 0.02 0.90 5.46 84.66 0.46 1.36 15 9 N -0.92 -54.08 13.29 21.45 0.28 -53.79 15 10 Si 0.97 43.47 29.54 68.60 2.03 45.50 15 11 H -0.27 -11.50 7.11 99.48 0.71 -10.79 15 12 H -0.28 -11.92 7.11 99.48 0.71 -11.21 15 13 H -0.27 -11.53 7.11 99.48 0.71 -10.82 15 14 C 0.09 2.87 6.16 42.55 0.26 3.13 15 15 C 0.05 1.50 10.32 84.68 0.87 2.37 15 16 N -0.46 -12.60 10.50 -195.22 -2.05 -14.65 15 17 C 0.05 0.91 11.22 84.67 0.95 1.86 15 18 C 0.06 1.11 11.22 84.67 0.95 2.06 15 19 N -0.45 -12.16 10.06 -183.30 -1.84 -14.00 15 20 H 0.06 1.99 8.14 -2.38 -0.02 1.97 15 21 H 0.08 2.41 7.96 -2.39 -0.02 2.39 15 22 H 0.05 1.94 6.92 -2.39 -0.02 1.92 15 23 H 0.02 1.22 7.14 -2.39 -0.02 1.20 15 24 H 0.01 0.78 8.14 -2.39 -0.02 0.76 15 25 H 0.27 14.79 8.31 -92.71 -0.77 14.02 15 26 H 0.17 5.71 5.95 -6.39 -0.04 5.67 15 27 H 0.21 1.87 8.06 -2.91 -0.02 1.85 15 28 H 0.22 1.82 8.06 -2.91 -0.02 1.79 15 Total: -1.00 -65.38 258.95 3.36 -62.02 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: 1.13 Total: 5.76 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: 4.86 Total: -17.84 kcal Atomic # 7 Polarization: -78.84 SS G_CDS: -3.61 Total: -82.45 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: -11.94 SS G_CDS: -1.05 Total: -12.99 kcal Total: -65.38 3.36 -62.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473041856.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.255 kcal (2) G-P(sol) polarization free energy of solvation -65.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds