Wall clock time and date at job start Sun Mar 29 2020 22:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30435 * 125.99217 * 2 1 4 4 N 1.39921 * 108.91408 * 180.26295 * 3 2 1 5 5 H 0.97004 * 125.74249 * 179.69390 * 4 3 2 6 6 C 1.34218 * 108.51990 * 359.71087 * 4 3 2 7 7 C 1.38130 * 107.40771 * 0.02562 * 6 4 3 8 8 C 1.47286 * 126.42841 * 179.97438 * 7 6 4 9 9 O 1.21530 * 119.99856 * 180.02562 * 8 7 6 10 10 O 1.34754 * 120.00018 * 0.02663 * 8 7 6 11 11 C 1.45201 * 116.99594 * 180.02562 * 10 8 7 12 12 H 1.08998 * 109.47357 * 30.00201 * 11 10 8 13 13 C 1.52992 * 109.46908 * 269.99468 * 11 10 8 14 14 C 1.50709 * 109.46761 * 149.99764 * 11 10 8 15 15 H 1.08001 * 119.99785 * 359.97438 * 14 11 10 16 16 C 1.37878 * 119.99925 * 179.97438 * 14 11 10 17 17 N 1.31515 * 119.99831 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 119.99929 * 179.97438 * 16 14 11 19 19 H 1.48497 * 109.47174 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46843 * 120.00055 * 18 16 14 21 21 H 1.48496 * 109.47038 * 240.00090 * 18 16 14 22 22 H 1.09000 * 109.47698 * 270.21215 * 1 2 3 23 23 H 1.09002 * 109.47570 * 30.21698 * 1 2 3 24 24 H 1.09001 * 109.47148 * 150.21340 * 1 2 3 25 25 H 1.08003 * 126.29956 * 179.97438 * 6 4 3 26 26 H 1.09003 * 109.47332 * 180.02562 * 13 11 10 27 27 H 1.09007 * 109.47553 * 300.00258 * 13 11 10 28 28 H 1.08997 * 109.47204 * 60.00791 * 13 11 10 29 29 H 0.96999 * 120.00079 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0553 0.0000 4 7 3.6110 0.6444 -0.0061 5 1 4.3839 1.2306 -0.0116 6 6 3.6448 -0.6973 -0.0034 7 6 2.3376 -1.1436 0.0038 8 6 1.8928 -2.5477 0.0083 9 8 0.7060 -2.8091 0.0141 10 8 2.8018 -3.5424 0.0061 11 6 2.2914 -4.9018 0.0103 12 1 1.3284 -4.9299 -0.4996 13 6 2.1182 -5.3770 1.4542 14 6 3.2639 -5.8057 -0.7029 15 1 4.1742 -5.3990 -1.1181 16 6 2.9913 -7.1517 -0.8252 17 7 1.8830 -7.6469 -0.3192 18 14 4.1963 -8.2719 -1.7098 19 1 5.3569 -7.4754 -2.1829 20 1 4.6679 -9.3267 -0.7768 21 1 3.5225 -8.9043 -2.8722 22 1 -0.3634 0.0038 1.0276 23 1 -0.3634 0.8880 -0.5172 24 1 -0.3633 -0.8919 -0.5105 25 1 4.5311 -1.3146 -0.0071 26 1 1.7354 -6.3976 1.4574 27 1 3.0813 -5.3489 1.9640 28 1 1.4148 -4.7233 1.9699 29 1 1.6911 -8.5937 -0.4056 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001523894430.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:37 Heat of formation + Delta-G solvation = -25.003311 kcal Electronic energy + Delta-G solvation = -15057.228791 eV Core-core repulsion = 12367.939311 eV Total energy + Delta-G solvation = -2689.289480 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.25338 -38.93585 -35.54772 -33.23165 -32.85837 -30.56230 -29.25329 -27.87220 -25.29153 -23.53881 -21.43555 -20.01320 -19.36863 -17.99137 -16.52261 -16.34887 -15.30190 -15.10396 -14.38053 -14.30874 -14.11363 -12.94067 -12.83649 -12.68743 -12.15538 -11.95179 -11.75812 -11.19134 -11.07969 -10.90197 -10.76999 -10.31980 -10.26257 -9.56011 -9.48883 -9.42976 -8.85372 -8.71255 -8.46278 -6.16276 -4.22845 1.62297 2.24820 2.71590 3.24369 3.31134 3.35693 3.80590 3.86268 4.36674 4.66482 4.83835 5.16923 5.26925 5.63124 5.81541 5.85154 6.08751 6.15331 6.55876 6.71597 6.94547 6.97512 7.11377 7.24033 7.57768 7.63394 7.77946 7.99661 8.18399 8.71868 8.96162 9.42643 10.91246 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.045912 B = 0.006648 C = 0.006133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.710135 B = 4210.871602 C = 4564.353328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.135 3.865 3 N -0.309 5.309 4 N -0.468 5.468 5 H 0.443 0.557 6 C 0.129 3.871 7 C -0.268 4.268 8 C 0.530 3.470 9 O -0.523 6.523 10 O -0.357 6.357 11 C 0.216 3.784 12 H 0.048 0.952 13 C -0.155 4.155 14 C -0.519 4.519 15 H 0.068 0.932 16 C 0.062 3.938 17 N -0.889 5.889 18 Si 0.911 3.089 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.282 1.282 22 H 0.080 0.920 23 H 0.070 0.930 24 H 0.098 0.902 25 H 0.196 0.804 26 H 0.098 0.902 27 H 0.035 0.965 28 H 0.017 0.983 29 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.192 12.534 1.032 12.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.032 4.032 3 N -0.132 5.132 4 N -0.172 5.172 5 H 0.287 0.713 6 C -0.023 4.023 7 C -0.281 4.281 8 C 0.374 3.626 9 O -0.414 6.414 10 O -0.273 6.273 11 C 0.164 3.836 12 H 0.065 0.935 13 C -0.212 4.212 14 C -0.557 4.557 15 H 0.087 0.913 16 C -0.140 4.140 17 N -0.527 5.527 18 Si 0.738 3.262 19 H -0.195 1.195 20 H -0.208 1.208 21 H -0.208 1.208 22 H 0.099 0.901 23 H 0.089 0.911 24 H 0.116 0.884 25 H 0.213 0.787 26 H 0.117 0.883 27 H 0.054 0.946 28 H 0.036 0.964 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.778 13.480 1.054 13.803 hybrid contribution 1.056 -1.340 -0.366 1.745 sum 3.834 12.140 0.689 12.750 Atomic orbital electron populations 1.20377 0.85624 1.04157 1.03644 1.22500 0.97400 0.88571 0.94748 1.77096 0.86367 1.22347 1.27411 1.46058 1.07691 1.05638 1.57825 0.71312 1.23398 0.99770 0.84878 0.94283 1.19727 0.92415 0.92542 1.23445 1.19891 0.84565 0.85252 0.72891 1.90732 1.18102 1.84916 1.47680 1.86518 1.39772 1.18744 1.82289 1.20611 0.96547 0.71789 0.94645 0.93461 1.22157 0.98843 1.03581 0.96648 1.21065 1.06407 0.92094 1.36146 0.91340 1.24884 0.95822 0.97686 0.95627 1.69911 1.24073 1.13921 1.44748 0.86237 0.80669 0.80130 0.79180 1.19540 1.20774 1.20782 0.90126 0.91076 0.88379 0.78736 0.88314 0.94563 0.96426 0.92487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.11 9.92 36.01 0.36 -0.75 15 2 C 0.14 2.16 7.27 -82.01 -0.60 1.57 15 3 N -0.31 -4.50 12.63 33.90 0.43 -4.07 15 4 N -0.47 -5.33 7.28 30.86 0.22 -5.11 15 5 H 0.44 3.11 8.96 -182.73 -1.64 1.47 15 6 C 0.13 1.70 11.86 -16.55 -0.20 1.51 15 7 C -0.27 -4.67 6.13 -105.08 -0.64 -5.31 15 8 C 0.53 11.53 7.93 34.41 0.27 11.80 15 9 O -0.52 -12.49 14.18 -19.29 -0.27 -12.76 15 10 O -0.36 -8.48 9.69 -40.64 -0.39 -8.87 15 11 C 0.22 5.82 2.56 -27.88 -0.07 5.75 15 12 H 0.05 1.40 7.16 -51.93 -0.37 1.03 15 13 C -0.15 -3.93 9.33 37.15 0.35 -3.59 15 14 C -0.52 -14.47 8.90 -34.44 -0.31 -14.78 15 15 H 0.07 1.87 7.81 -52.49 -0.41 1.46 15 16 C 0.06 1.69 5.30 -17.82 -0.09 1.60 15 17 N -0.89 -25.21 11.32 55.43 0.63 -24.58 15 18 Si 0.91 20.93 29.54 -169.99 -5.02 15.91 15 19 H -0.27 -6.10 7.11 56.52 0.40 -5.70 15 20 H -0.28 -6.38 7.11 56.52 0.40 -5.97 15 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 22 H 0.08 1.03 8.14 -51.93 -0.42 0.61 15 23 H 0.07 0.82 8.14 -51.93 -0.42 0.40 15 24 H 0.10 1.53 6.56 -51.93 -0.34 1.19 15 25 H 0.20 2.03 8.06 -52.48 -0.42 1.61 15 26 H 0.10 2.68 6.07 -51.93 -0.32 2.36 15 27 H 0.04 0.87 8.14 -51.93 -0.42 0.44 15 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 15 29 H 0.27 7.06 8.31 -40.82 -0.34 6.72 15 LS Contribution 260.65 15.07 3.93 3.93 Total: -1.00 -32.43 260.65 -5.74 -38.17 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -4.32 Total: -0.41 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -0.93 Total: -2.21 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: 1.28 Total: -33.76 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.67 Total: -21.64 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -32.43 -5.74 -38.17 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001523894430.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.167 kcal (2) G-P(sol) polarization free energy of solvation -32.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds