Wall clock time and date at job start Sun Mar 29 2020 22:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30435 * 125.99217 * 2 1 4 4 N 1.39921 * 108.91408 * 180.26295 * 3 2 1 5 5 H 0.97004 * 125.74249 * 179.69390 * 4 3 2 6 6 C 1.34218 * 108.51990 * 359.71087 * 4 3 2 7 7 C 1.38130 * 107.40771 * 0.02562 * 6 4 3 8 8 C 1.47286 * 126.42841 * 179.97438 * 7 6 4 9 9 O 1.21530 * 119.99856 * 180.02562 * 8 7 6 10 10 O 1.34754 * 120.00018 * 0.02663 * 8 7 6 11 11 C 1.45201 * 116.99594 * 180.02562 * 10 8 7 12 12 H 1.08998 * 109.47357 * 30.00201 * 11 10 8 13 13 C 1.52992 * 109.46908 * 269.99468 * 11 10 8 14 14 C 1.50709 * 109.46761 * 149.99764 * 11 10 8 15 15 H 1.08001 * 119.99785 * 359.97438 * 14 11 10 16 16 C 1.37878 * 119.99925 * 179.97438 * 14 11 10 17 17 N 1.31515 * 119.99831 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 119.99929 * 179.97438 * 16 14 11 19 19 H 1.48497 * 109.47174 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46843 * 120.00055 * 18 16 14 21 21 H 1.48496 * 109.47038 * 240.00090 * 18 16 14 22 22 H 1.09000 * 109.47698 * 270.21215 * 1 2 3 23 23 H 1.09002 * 109.47570 * 30.21698 * 1 2 3 24 24 H 1.09001 * 109.47148 * 150.21340 * 1 2 3 25 25 H 1.08003 * 126.29956 * 179.97438 * 6 4 3 26 26 H 1.09003 * 109.47332 * 180.02562 * 13 11 10 27 27 H 1.09007 * 109.47553 * 300.00258 * 13 11 10 28 28 H 1.08997 * 109.47204 * 60.00791 * 13 11 10 29 29 H 0.96999 * 120.00079 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0553 0.0000 4 7 3.6110 0.6444 -0.0061 5 1 4.3839 1.2306 -0.0116 6 6 3.6448 -0.6973 -0.0034 7 6 2.3376 -1.1436 0.0038 8 6 1.8928 -2.5477 0.0083 9 8 0.7060 -2.8091 0.0141 10 8 2.8018 -3.5424 0.0061 11 6 2.2914 -4.9018 0.0103 12 1 1.3284 -4.9299 -0.4996 13 6 2.1182 -5.3770 1.4542 14 6 3.2639 -5.8057 -0.7029 15 1 4.1742 -5.3990 -1.1181 16 6 2.9913 -7.1517 -0.8252 17 7 1.8830 -7.6469 -0.3192 18 14 4.1963 -8.2719 -1.7098 19 1 5.3569 -7.4754 -2.1829 20 1 4.6679 -9.3267 -0.7768 21 1 3.5225 -8.9043 -2.8722 22 1 -0.3634 0.0038 1.0276 23 1 -0.3634 0.8880 -0.5172 24 1 -0.3633 -0.8919 -0.5105 25 1 4.5311 -1.3146 -0.0071 26 1 1.7354 -6.3976 1.4574 27 1 3.0813 -5.3489 1.9640 28 1 1.4148 -4.7233 1.9699 29 1 1.6911 -8.5937 -0.4056 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001523894430.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:37 Heat of formation + Delta-G solvation = -46.772433 kcal Electronic energy + Delta-G solvation = -15058.172771 eV Core-core repulsion = 12367.939311 eV Total energy + Delta-G solvation = -2690.233460 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.44214 -40.69468 -37.40171 -35.26687 -34.01255 -32.12705 -31.01774 -29.00022 -27.41167 -25.08263 -23.06519 -21.54393 -20.72342 -19.37137 -18.42237 -18.10701 -16.95858 -16.81951 -16.08633 -15.74326 -15.28179 -14.80919 -14.17878 -13.97561 -13.76421 -13.74086 -13.18173 -13.06111 -12.91378 -12.76407 -12.34497 -12.11271 -12.09136 -11.50840 -11.23623 -10.91326 -10.57053 -10.55008 -9.95703 -8.24538 -6.40931 0.41039 0.96042 1.45012 1.45770 1.59168 1.70192 2.18436 2.25508 2.49165 3.06544 3.45833 3.75862 4.19502 4.31597 4.53855 4.61935 4.74561 4.83834 4.86025 4.91781 4.94495 5.22762 5.40717 5.54166 5.68870 5.97834 6.14669 6.21652 6.46143 6.65975 7.09196 7.31849 8.83577 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.045912 B = 0.006648 C = 0.006133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.710135 B = 4210.871602 C = 4564.353328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.128 3.872 3 N -0.315 5.315 4 N -0.440 5.440 5 H 0.465 0.535 6 C 0.163 3.837 7 C -0.313 4.313 8 C 0.525 3.475 9 O -0.556 6.556 10 O -0.358 6.358 11 C 0.219 3.781 12 H 0.007 0.993 13 C -0.142 4.142 14 C -0.544 4.544 15 H 0.071 0.929 16 C 0.015 3.985 17 N -0.918 5.918 18 Si 0.984 3.016 19 H -0.261 1.261 20 H -0.273 1.273 21 H -0.278 1.278 22 H 0.088 0.912 23 H 0.094 0.906 24 H 0.074 0.926 25 H 0.228 0.772 26 H 0.080 0.920 27 H 0.047 0.953 28 H 0.021 0.979 29 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.297 13.491 0.780 14.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.040 4.040 3 N -0.138 5.138 4 N -0.146 5.146 5 H 0.314 0.686 6 C 0.008 3.992 7 C -0.326 4.326 8 C 0.372 3.628 9 O -0.449 6.449 10 O -0.274 6.274 11 C 0.166 3.834 12 H 0.024 0.976 13 C -0.200 4.200 14 C -0.581 4.581 15 H 0.089 0.911 16 C -0.185 4.185 17 N -0.557 5.557 18 Si 0.807 3.193 19 H -0.185 1.185 20 H -0.198 1.198 21 H -0.204 1.204 22 H 0.107 0.893 23 H 0.113 0.887 24 H 0.093 0.907 25 H 0.244 0.756 26 H 0.098 0.902 27 H 0.066 0.934 28 H 0.040 0.960 29 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.902 14.503 0.810 15.331 hybrid contribution 0.410 -1.518 -0.280 1.597 sum 5.312 12.985 0.531 14.040 Atomic orbital electron populations 1.20375 0.85064 1.04108 1.04174 1.22709 0.98211 0.88329 0.94719 1.77075 0.87436 1.21790 1.27514 1.46088 1.07647 1.05484 1.55429 0.68553 1.23738 0.99115 0.85519 0.90865 1.19603 0.94821 0.90227 1.27955 1.20601 0.84041 0.86370 0.71787 1.90709 1.19330 1.85496 1.49360 1.86491 1.40061 1.17935 1.82940 1.20323 0.94741 0.73596 0.94786 0.97552 1.21980 0.99360 1.02433 0.96187 1.21340 1.06733 0.92917 1.37142 0.91103 1.25838 0.97579 0.99034 0.96036 1.70036 1.25706 1.14528 1.45380 0.85123 0.78372 0.77908 0.77909 1.18463 1.19832 1.20407 0.89332 0.88693 0.90723 0.75587 0.90170 0.93437 0.95952 0.92094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.18 9.92 71.24 0.71 -1.47 15 2 C 0.13 3.94 7.27 43.53 0.32 4.25 15 3 N -0.31 -8.38 12.63 -46.65 -0.59 -8.97 15 4 N -0.44 -8.50 7.28 -56.28 -0.41 -8.91 15 5 H 0.46 4.55 8.96 -213.43 -1.91 2.64 15 6 C 0.16 3.82 11.86 84.30 1.00 4.82 15 7 C -0.31 -10.61 6.13 -20.16 -0.12 -10.73 15 8 C 0.53 23.28 7.93 70.20 0.56 23.84 15 9 O -0.56 -27.72 14.18 19.74 0.28 -27.44 15 10 O -0.36 -17.19 9.69 -56.65 -0.55 -17.74 15 11 C 0.22 12.08 2.56 29.85 0.08 12.16 15 12 H 0.01 0.41 7.16 -2.39 -0.02 0.40 15 13 C -0.14 -7.36 9.33 71.98 0.67 -6.69 15 14 C -0.54 -30.53 8.90 25.60 0.23 -30.30 15 15 H 0.07 3.84 7.81 -2.91 -0.02 3.82 15 16 C 0.01 0.80 5.30 84.65 0.45 1.25 15 17 N -0.92 -52.76 11.32 21.45 0.24 -52.52 15 18 Si 0.98 42.39 29.54 68.60 2.03 44.41 15 19 H -0.26 -10.72 7.11 99.48 0.71 -10.02 15 20 H -0.27 -11.33 7.11 99.48 0.71 -10.62 15 21 H -0.28 -11.78 7.11 99.48 0.71 -11.07 15 22 H 0.09 2.26 8.14 -2.39 -0.02 2.24 15 23 H 0.09 2.10 8.14 -2.39 -0.02 2.08 15 24 H 0.07 2.42 6.56 -2.39 -0.02 2.41 15 25 H 0.23 3.82 8.06 -2.91 -0.02 3.80 15 26 H 0.08 4.46 6.07 -2.39 -0.01 4.45 15 27 H 0.05 2.29 8.14 -2.38 -0.02 2.27 15 28 H 0.02 1.08 8.14 -2.39 -0.02 1.06 15 29 H 0.27 14.45 8.31 -92.71 -0.77 13.68 15 Total: -1.00 -71.08 260.65 4.15 -66.93 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -0.73 Total: 7.11 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: 3.88 Total: -2.88 kcal Atomic # 7 Polarization: -69.64 SS G_CDS: -0.76 Total: -70.40 kcal Atomic # 8 Polarization: -44.91 SS G_CDS: -0.27 Total: -45.18 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.41 kcal Total: -71.08 4.15 -66.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001523894430.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.162 kcal (2) G-P(sol) polarization free energy of solvation -71.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds