Wall clock time and date at job start Sun Mar 29 2020 22:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.46907 * 240.00235 * 3 2 1 5 5 H 1.48504 * 109.47065 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47302 * 120.00188 * 3 2 1 7 7 C 1.37883 * 119.99532 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99815 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00023 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99870 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47066 * 180.02562 * 11 10 9 13 13 C 1.35487 * 126.08182 * 269.69235 * 12 11 10 14 14 N 1.34954 * 108.98438 * 179.82969 * 13 12 11 15 15 H 0.97009 * 125.63393 * 180.14852 * 14 13 12 16 16 C 1.37690 * 108.73245 * 0.43815 * 14 13 12 17 17 C 1.46497 * 126.26566 * 179.73356 * 16 14 13 18 18 O 1.21615 * 119.99963 * 179.97438 * 17 16 14 19 19 O 1.34888 * 119.99624 * 0.02562 * 17 16 14 20 20 C 1.37993 * 107.47635 * 359.73273 * 16 14 13 21 21 H 0.97001 * 119.99132 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.46763 * 60.00533 * 9 7 2 23 23 H 1.08995 * 109.47483 * 300.00190 * 9 7 2 24 24 H 1.00901 * 111.00067 * 303.95401 * 10 9 7 25 25 H 1.09001 * 109.46798 * 300.00327 * 11 10 9 26 26 H 1.08998 * 109.46961 * 60.00043 * 11 10 9 27 27 H 1.08001 * 125.50384 * 359.97438 * 13 12 11 28 28 H 0.96704 * 116.99948 * 179.97438 * 19 17 16 29 29 H 1.08000 * 126.52012 * 179.97438 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6962 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5050 -4.9071 -0.0011 12 6 2.5145 -6.0261 -0.0005 13 6 3.0454 -6.6224 -1.0951 14 7 3.9135 -7.5762 -0.6978 15 1 4.4308 -8.1496 -1.2849 16 6 3.9388 -7.6056 0.6785 17 6 4.7456 -8.5007 1.5116 18 8 4.6792 -8.4277 2.7237 19 8 5.5628 -9.4052 0.9340 20 6 3.0651 -6.6375 1.1298 21 1 -0.4849 0.8401 0.0004 22 1 0.6240 -2.5566 -0.8904 23 1 0.6246 -2.5571 0.8896 24 1 2.8403 -3.5488 -0.7819 25 1 0.8798 -4.9817 0.8886 26 1 0.8805 -4.9812 -0.8914 27 1 2.8132 -6.3729 -2.1200 28 1 6.0756 -9.9738 1.5248 29 1 2.8476 -6.3979 2.1602 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601068351.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:37 Heat of formation + Delta-G solvation = -78.110816 kcal Electronic energy + Delta-G solvation = -14291.036971 eV Core-core repulsion = 11599.444576 eV Total energy + Delta-G solvation = -2691.592394 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.39971 -40.62960 -37.12568 -37.06953 -34.65848 -32.38843 -30.83898 -28.81471 -25.93965 -24.77345 -23.35354 -21.36791 -20.83004 -19.51297 -18.70969 -18.33531 -16.83218 -16.70762 -16.55594 -15.95032 -15.34259 -15.03221 -14.56517 -14.39479 -14.31622 -13.73293 -13.64448 -13.01636 -12.71041 -12.65596 -12.48681 -12.42830 -11.97331 -11.90942 -11.30423 -10.62373 -9.89838 -9.33427 -8.96359 -8.18907 -6.29862 0.19132 1.43150 1.47076 1.54683 1.61080 1.88907 2.09149 2.34542 2.43578 3.14027 3.87452 4.14810 4.19906 4.24043 4.34447 4.71160 4.87119 5.00678 5.11869 5.19410 5.33954 5.50992 5.64044 5.69520 5.87186 6.07381 6.53582 6.54215 6.79833 6.92998 6.96835 7.40956 8.92164 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.050327 B = 0.004572 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.225494 B = 6123.224088 C = 6286.594437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.973 3.027 4 H -0.264 1.264 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.536 4.536 8 H 0.063 0.937 9 C 0.208 3.792 10 N -0.688 5.688 11 C 0.131 3.869 12 C -0.191 4.191 13 C 0.070 3.930 14 N -0.505 5.505 15 H 0.440 0.560 16 C -0.071 4.071 17 C 0.564 3.436 18 O -0.548 6.548 19 O -0.507 6.507 20 C -0.091 4.091 21 H 0.265 0.735 22 H -0.033 1.033 23 H -0.003 1.003 24 H 0.336 0.664 25 H 0.057 0.943 26 H 0.037 0.963 27 H 0.210 0.790 28 H 0.436 0.564 29 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.428 -18.131 -4.494 20.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.797 3.203 4 H -0.189 1.189 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.574 4.574 8 H 0.081 0.919 9 C 0.080 3.920 10 N -0.319 5.319 11 C 0.002 3.998 12 C -0.197 4.197 13 C -0.070 4.070 14 N -0.101 5.101 15 H 0.282 0.718 16 C -0.181 4.181 17 C 0.410 3.590 18 O -0.439 6.439 19 O -0.322 6.322 20 C -0.118 4.118 21 H 0.074 0.926 22 H -0.016 1.016 23 H 0.016 0.984 24 H 0.153 0.847 25 H 0.076 0.924 26 H 0.055 0.945 27 H 0.227 0.773 28 H 0.299 0.701 29 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 9.256 -17.905 -3.806 20.512 hybrid contribution 0.162 0.350 -0.385 0.544 sum 9.417 -17.556 -4.190 20.358 Atomic orbital electron populations 1.70087 1.07747 1.28004 1.51561 1.25951 0.95806 1.03338 0.94669 0.85391 0.78103 0.77708 0.79112 1.18918 1.20784 1.19629 1.21535 0.93777 0.91547 1.50540 0.91889 1.19210 0.90672 0.88805 0.93336 1.60557 1.20498 1.01230 1.49582 1.20139 0.93125 0.86465 1.00093 1.19366 1.05440 1.01841 0.93043 1.22293 0.92996 0.91136 1.00599 1.41664 1.33750 1.29559 1.05163 0.71839 1.19087 1.09232 1.06134 0.83664 1.19398 0.76633 0.77754 0.85168 1.90952 1.66442 1.70342 1.16173 1.84511 1.54516 1.47489 1.45705 1.21316 0.96234 0.94772 0.99502 0.92645 1.01574 0.98445 0.84662 0.92422 0.94461 0.77323 0.70133 0.84815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.85 13.29 21.45 0.28 -56.57 15 2 C 0.00 0.03 5.46 84.66 0.46 0.49 15 3 Si 0.97 44.66 29.54 68.60 2.03 46.69 15 4 H -0.26 -11.52 7.11 99.48 0.71 -10.81 15 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 15 6 H -0.27 -12.17 7.11 99.48 0.71 -11.47 15 7 C -0.54 -30.97 9.32 25.60 0.24 -30.73 15 8 H 0.06 3.54 7.81 -2.91 -0.02 3.52 15 9 C 0.21 11.25 5.44 85.56 0.47 11.71 15 10 N -0.69 -30.05 6.48 -521.98 -3.38 -33.43 15 11 C 0.13 4.67 6.17 85.55 0.53 5.20 15 12 C -0.19 -5.56 5.62 -20.12 -0.11 -5.67 15 13 C 0.07 1.42 11.78 83.58 0.98 2.40 15 14 N -0.51 -9.00 6.07 -184.06 -1.12 -10.11 15 15 H 0.44 4.56 8.96 -92.70 -0.83 3.73 15 16 C -0.07 -1.77 7.10 40.32 0.29 -1.48 15 17 C 0.56 13.42 8.30 69.97 0.58 14.00 15 18 O -0.55 -17.04 17.67 19.46 0.34 -16.70 15 19 O -0.51 -7.22 13.44 -58.02 -0.78 -8.00 15 20 C -0.09 -2.78 10.60 22.59 0.24 -2.54 15 21 H 0.26 15.14 8.31 -92.71 -0.77 14.37 15 22 H -0.03 -1.90 8.14 -2.39 -0.02 -1.92 15 23 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 15 24 H 0.34 13.62 8.71 -89.69 -0.78 12.83 15 25 H 0.06 2.19 8.14 -2.39 -0.02 2.17 15 26 H 0.04 1.24 8.14 -2.39 -0.02 1.22 15 27 H 0.21 2.70 8.06 -2.91 -0.02 2.67 15 28 H 0.44 2.24 9.11 -74.05 -0.67 1.57 15 29 H 0.13 4.42 8.06 -2.91 -0.02 4.40 15 Total: -1.00 -74.52 269.20 -0.04 -74.56 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -1.08 Total: 10.19 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: 3.67 Total: -6.62 kcal Atomic # 7 Polarization: -95.90 SS G_CDS: -4.21 Total: -100.11 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -0.44 Total: -24.70 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -74.52 -0.04 -74.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068351.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.549 kcal (2) G-P(sol) polarization free energy of solvation -74.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds