Wall clock time and date at job start Sun Mar 29 2020 22:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.35344 * 126.38139 * 2 1 4 4 C 1.41545 * 105.50396 * 179.97438 * 3 2 1 5 5 C 1.47582 * 126.52377 * 179.97438 * 4 3 2 6 6 O 1.21497 * 119.99885 * 0.02562 * 5 4 3 7 7 O 1.34725 * 120.00015 * 179.97438 * 5 4 3 8 8 N 1.31854 * 106.95052 * 0.02562 * 4 3 2 9 9 N 1.28468 * 110.06520 * 359.97438 * 8 4 3 10 10 C 1.46498 * 124.88198 * 180.02562 * 9 8 4 11 11 H 1.08995 * 109.47566 * 179.97438 * 10 9 8 12 12 C 1.53002 * 109.47415 * 59.97148 * 10 9 8 13 13 C 1.50702 * 109.46693 * 299.97281 * 10 9 8 14 14 H 1.08001 * 119.99820 * 0.02562 * 13 10 9 15 15 C 1.37876 * 119.99940 * 179.97438 * 13 10 9 16 16 N 1.31518 * 120.00011 * 0.02562 * 15 13 10 17 17 Si 1.86804 * 119.99849 * 179.97438 * 15 13 10 18 18 H 1.48494 * 109.47305 * 0.02562 * 17 15 13 19 19 H 1.48510 * 109.46758 * 120.00635 * 17 15 13 20 20 H 1.48500 * 109.47269 * 240.00254 * 17 15 13 21 21 H 1.09003 * 109.46376 * 90.02087 * 1 2 3 22 22 H 1.08993 * 109.46917 * 210.01963 * 1 2 3 23 23 H 1.08998 * 109.46728 * 330.02692 * 1 2 3 24 24 H 1.08005 * 127.24513 * 0.24321 * 3 2 1 25 25 H 0.96702 * 117.00078 * 180.02562 * 7 5 4 26 26 H 1.08996 * 109.47289 * 180.02562 * 12 10 9 27 27 H 1.09004 * 109.47092 * 300.00483 * 12 10 9 28 28 H 1.08999 * 109.46865 * 60.00318 * 12 10 9 29 29 H 0.97002 * 119.99570 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3099 1.0896 0.0000 4 6 3.6324 0.5852 0.0006 5 6 4.8757 1.3803 0.0003 6 8 4.8206 2.5940 -0.0001 7 8 6.0718 0.7603 0.0015 8 7 3.5421 -0.7302 0.0004 9 7 2.3080 -1.0873 0.0002 10 6 1.8373 -2.4746 0.0005 11 1 0.7474 -2.4885 0.0007 12 6 2.3567 -3.1893 1.2496 13 6 2.3484 -3.1786 -1.2301 14 1 2.9627 -2.6460 -1.9410 15 6 2.0325 -4.5029 -1.4479 16 7 1.2848 -5.1516 -0.5820 17 14 2.6654 -5.3753 -2.9736 18 1 3.4778 -4.4315 -3.7824 19 1 3.5060 -6.5312 -2.5700 20 1 1.5160 -5.8572 -3.7810 21 1 -0.3632 -0.0004 -1.0277 22 1 -0.3633 -0.8898 0.5141 23 1 -0.3633 0.8902 0.5134 24 1 2.0054 2.1259 0.0036 25 1 6.8581 1.3232 0.0016 26 1 2.0069 -4.2216 1.2495 27 1 3.4467 -3.1754 1.2494 28 1 1.9871 -2.6801 2.1396 29 1 1.0623 -6.0832 -0.7355 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607602439.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:32 Heat of formation + Delta-G solvation = -25.185694 kcal Electronic energy + Delta-G solvation = -15247.208183 eV Core-core repulsion = 12557.910794 eV Total energy + Delta-G solvation = -2689.297389 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.01678 -39.46011 -35.72663 -34.78312 -32.27473 -31.86115 -29.00010 -26.57261 -25.51040 -24.59988 -21.47663 -20.48845 -19.27028 -17.38618 -16.73934 -16.43725 -15.52908 -15.40713 -14.59133 -14.30606 -13.69734 -13.05568 -12.77532 -12.68714 -12.54185 -11.89435 -11.77162 -11.29228 -11.19265 -11.01311 -10.91818 -10.56068 -10.46923 -10.32441 -10.05045 -9.48457 -8.71639 -8.36029 -8.29475 -6.35301 -4.43359 1.90159 2.72755 3.15060 3.16465 3.24716 3.31833 3.71846 3.72464 4.23260 4.95610 5.14058 5.23930 5.54714 5.88157 5.96005 6.10548 6.13791 6.39130 6.48497 6.57689 6.59403 6.73049 6.93915 7.10944 7.47514 7.55722 7.77038 7.82412 8.22799 8.59477 8.82852 9.24018 10.70834 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.029197 B = 0.008584 C = 0.007460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.766346 B = 3261.020078 C = 3752.253397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.001 3.999 3 C -0.191 4.191 4 C -0.054 4.054 5 C 0.582 3.418 6 O -0.527 6.527 7 O -0.502 6.502 8 N -0.208 5.208 9 N -0.226 5.226 10 C 0.261 3.739 11 H 0.072 0.928 12 C -0.150 4.150 13 C -0.527 4.527 14 H 0.069 0.931 15 C 0.069 3.931 16 N -0.889 5.889 17 Si 0.909 3.091 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.281 1.281 21 H 0.075 0.925 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.153 0.847 25 H 0.406 0.594 26 H 0.105 0.895 27 H 0.048 0.952 28 H 0.017 0.983 29 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.430 6.881 1.696 7.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.124 4.124 3 C -0.219 4.219 4 C -0.207 4.207 5 C 0.426 3.574 6 O -0.415 6.415 7 O -0.311 6.311 8 N -0.048 5.048 9 N -0.018 5.018 10 C 0.164 3.836 11 H 0.089 0.911 12 C -0.209 4.209 13 C -0.565 4.565 14 H 0.087 0.913 15 C -0.135 4.135 16 N -0.526 5.526 17 Si 0.736 3.264 18 H -0.195 1.195 19 H -0.205 1.205 20 H -0.207 1.207 21 H 0.094 0.906 22 H 0.092 0.908 23 H 0.095 0.905 24 H 0.170 0.830 25 H 0.263 0.737 26 H 0.123 0.877 27 H 0.067 0.933 28 H 0.036 0.964 29 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.592 5.690 1.733 5.978 hybrid contribution 0.388 0.536 -0.779 1.022 sum 0.980 6.226 0.953 6.374 Atomic orbital electron populations 1.20283 0.87232 1.03187 1.03097 1.21424 0.95674 0.87090 1.08168 1.21219 0.90032 0.99040 1.11596 1.20457 0.91496 0.90789 1.17981 1.19413 0.82310 0.84745 0.70925 1.90842 1.87820 1.14622 1.48233 1.84730 1.16210 1.44577 1.85560 1.73708 1.03524 1.12885 1.14706 1.46758 1.01512 1.09425 1.44073 1.19748 0.96055 0.70446 0.97314 0.91079 1.22116 1.00867 1.03803 0.94065 1.21197 1.33550 0.96354 1.05445 0.91254 1.24865 0.94494 0.96770 0.97331 1.69848 1.36405 1.11096 1.35296 0.86238 0.78732 0.79420 0.81976 1.19505 1.20538 1.20672 0.90596 0.90836 0.90502 0.82970 0.73671 0.87673 0.93306 0.96407 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.17 9.92 36.01 0.36 -0.81 15 2 C 0.00 0.02 6.92 -82.20 -0.57 -0.55 15 3 C -0.19 -3.58 10.73 -39.35 -0.42 -4.00 15 4 C -0.05 -1.12 7.17 -82.79 -0.59 -1.71 15 5 C 0.58 10.83 8.34 34.54 0.29 11.12 15 6 O -0.53 -10.18 17.71 -19.26 -0.34 -10.53 15 7 O -0.50 -7.89 13.44 -40.56 -0.55 -8.43 15 8 N -0.21 -4.79 11.63 33.41 0.39 -4.40 15 9 N -0.23 -5.05 3.03 -51.78 -0.16 -5.21 15 10 C 0.26 6.20 2.93 -69.08 -0.20 6.00 15 11 H 0.07 1.67 6.55 -51.93 -0.34 1.33 15 12 C -0.15 -3.45 9.14 37.16 0.34 -3.11 15 13 C -0.53 -13.84 8.68 -34.44 -0.30 -14.14 15 14 H 0.07 1.92 7.81 -52.49 -0.41 1.51 15 15 C 0.07 1.77 5.30 -17.82 -0.09 1.67 15 16 N -0.89 -23.08 11.32 55.43 0.63 -22.46 15 17 Si 0.91 20.42 29.54 -169.99 -5.02 15.40 15 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 15 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 15 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 15 21 H 0.08 1.05 8.14 -51.93 -0.42 0.63 15 22 H 0.07 1.08 7.03 -51.93 -0.36 0.72 15 23 H 0.08 0.90 8.14 -51.93 -0.42 0.48 15 24 H 0.15 2.45 8.06 -52.48 -0.42 2.03 15 25 H 0.41 3.85 9.11 45.56 0.42 4.27 15 26 H 0.10 2.56 6.07 -51.93 -0.32 2.24 15 27 H 0.05 1.15 8.14 -51.93 -0.42 0.73 15 28 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 15 29 H 0.27 6.61 8.31 -40.82 -0.34 6.27 15 LS Contribution 262.62 15.07 3.96 3.96 Total: -1.00 -29.92 262.62 -4.55 -34.47 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -2.26 Total: 2.74 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -1.19 Total: -5.53 kcal Atomic # 7 Polarization: -32.93 SS G_CDS: 0.86 Total: -32.07 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.89 Total: -18.96 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.92 -4.55 -34.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607602439.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.284 kcal (2) G-P(sol) polarization free energy of solvation -29.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds