Wall clock time and date at job start Sun Mar 29 2020 22:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.35344 * 126.38139 * 2 1 4 4 C 1.41545 * 105.50396 * 179.97438 * 3 2 1 5 5 C 1.47582 * 126.52377 * 179.97438 * 4 3 2 6 6 O 1.21497 * 119.99885 * 0.02562 * 5 4 3 7 7 O 1.34725 * 120.00015 * 179.97438 * 5 4 3 8 8 N 1.31854 * 106.95052 * 0.02562 * 4 3 2 9 9 N 1.28468 * 110.06520 * 359.97438 * 8 4 3 10 10 C 1.46498 * 124.88198 * 180.02562 * 9 8 4 11 11 H 1.08995 * 109.47566 * 179.97438 * 10 9 8 12 12 C 1.53002 * 109.47415 * 59.97148 * 10 9 8 13 13 C 1.50702 * 109.46693 * 299.97281 * 10 9 8 14 14 H 1.08001 * 119.99820 * 0.02562 * 13 10 9 15 15 C 1.37876 * 119.99940 * 179.97438 * 13 10 9 16 16 N 1.31518 * 120.00011 * 0.02562 * 15 13 10 17 17 Si 1.86804 * 119.99849 * 179.97438 * 15 13 10 18 18 H 1.48494 * 109.47305 * 0.02562 * 17 15 13 19 19 H 1.48510 * 109.46758 * 120.00635 * 17 15 13 20 20 H 1.48500 * 109.47269 * 240.00254 * 17 15 13 21 21 H 1.09003 * 109.46376 * 90.02087 * 1 2 3 22 22 H 1.08993 * 109.46917 * 210.01963 * 1 2 3 23 23 H 1.08998 * 109.46728 * 330.02692 * 1 2 3 24 24 H 1.08005 * 127.24513 * 0.24321 * 3 2 1 25 25 H 0.96702 * 117.00078 * 180.02562 * 7 5 4 26 26 H 1.08996 * 109.47289 * 180.02562 * 12 10 9 27 27 H 1.09004 * 109.47092 * 300.00483 * 12 10 9 28 28 H 1.08999 * 109.46865 * 60.00318 * 12 10 9 29 29 H 0.97002 * 119.99570 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3099 1.0896 0.0000 4 6 3.6324 0.5852 0.0006 5 6 4.8757 1.3803 0.0003 6 8 4.8206 2.5940 -0.0001 7 8 6.0718 0.7603 0.0015 8 7 3.5421 -0.7302 0.0004 9 7 2.3080 -1.0873 0.0002 10 6 1.8373 -2.4746 0.0005 11 1 0.7474 -2.4885 0.0007 12 6 2.3567 -3.1893 1.2496 13 6 2.3484 -3.1786 -1.2301 14 1 2.9627 -2.6460 -1.9410 15 6 2.0325 -4.5029 -1.4479 16 7 1.2848 -5.1516 -0.5820 17 14 2.6654 -5.3753 -2.9736 18 1 3.4778 -4.4315 -3.7824 19 1 3.5060 -6.5312 -2.5700 20 1 1.5160 -5.8572 -3.7810 21 1 -0.3632 -0.0004 -1.0277 22 1 -0.3633 -0.8898 0.5141 23 1 -0.3633 0.8902 0.5134 24 1 2.0054 2.1259 0.0036 25 1 6.8581 1.3232 0.0016 26 1 2.0069 -4.2216 1.2495 27 1 3.4467 -3.1754 1.2494 28 1 1.9871 -2.6801 2.1396 29 1 1.0623 -6.0832 -0.7355 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607602439.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:31 Heat of formation + Delta-G solvation = -44.981841 kcal Electronic energy + Delta-G solvation = -15248.066609 eV Core-core repulsion = 12557.910794 eV Total energy + Delta-G solvation = -2690.155814 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.58045 -40.87031 -37.09739 -36.61165 -33.88525 -33.47843 -30.72141 -27.91023 -27.46220 -26.19250 -23.14709 -22.01275 -20.82447 -18.88923 -18.53288 -17.94066 -17.16938 -17.03036 -16.13107 -16.02929 -15.26619 -14.63380 -14.35202 -13.97213 -13.83161 -13.58187 -13.28318 -12.94980 -12.87518 -12.71927 -12.58818 -12.39255 -12.19126 -11.92798 -11.63861 -11.34366 -10.66376 -10.01412 -9.79797 -8.31053 -6.45521 0.39173 1.23430 1.37811 1.41897 1.51926 1.68519 2.20779 2.26587 2.39550 2.99237 3.65390 3.88389 4.28107 4.45976 4.62255 4.67972 4.73728 4.78396 4.82143 5.01650 5.10296 5.28364 5.44437 5.47833 5.58735 5.65964 5.91439 6.10383 6.58574 6.94513 7.22910 7.26849 8.74283 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.029197 B = 0.008584 C = 0.007460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.766346 B = 3261.020078 C = 3752.253397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.001 3.999 3 C -0.192 4.192 4 C -0.064 4.064 5 C 0.588 3.412 6 O -0.536 6.536 7 O -0.501 6.501 8 N -0.252 5.252 9 N -0.246 5.246 10 C 0.265 3.735 11 H 0.072 0.928 12 C -0.137 4.137 13 C -0.547 4.547 14 H 0.046 0.954 15 C 0.034 3.966 16 N -0.903 5.903 17 Si 0.963 3.037 18 H -0.280 1.280 19 H -0.274 1.274 20 H -0.270 1.270 21 H 0.085 0.915 22 H 0.070 0.930 23 H 0.112 0.888 24 H 0.181 0.819 25 H 0.433 0.567 26 H 0.091 0.909 27 H 0.032 0.968 28 H 0.035 0.965 29 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.009 7.584 1.547 7.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.124 4.124 3 C -0.219 4.219 4 C -0.219 4.219 5 C 0.432 3.568 6 O -0.425 6.425 7 O -0.314 6.314 8 N -0.091 5.091 9 N -0.037 5.037 10 C 0.168 3.832 11 H 0.090 0.910 12 C -0.196 4.196 13 C -0.585 4.585 14 H 0.064 0.936 15 C -0.167 4.167 16 N -0.541 5.541 17 Si 0.788 3.212 18 H -0.205 1.205 19 H -0.200 1.200 20 H -0.195 1.195 21 H 0.104 0.896 22 H 0.089 0.911 23 H 0.130 0.870 24 H 0.198 0.802 25 H 0.295 0.705 26 H 0.109 0.891 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.175 6.394 1.591 6.592 hybrid contribution 0.573 0.382 -0.718 0.995 sum 0.747 6.776 0.874 6.873 Atomic orbital electron populations 1.20468 0.84197 1.04809 1.04198 1.22189 0.97576 0.86119 1.06490 1.21602 0.89128 1.00248 1.10959 1.21005 0.93352 0.90495 1.17020 1.19149 0.82621 0.84291 0.70744 1.90835 1.88121 1.14750 1.48794 1.84673 1.16603 1.45279 1.84826 1.73628 1.04369 1.14276 1.16851 1.46584 1.01939 1.09512 1.45646 1.19501 0.95867 0.71478 0.96401 0.91007 1.21935 0.99673 1.03136 0.94846 1.21262 1.33915 0.97040 1.06279 0.93607 1.25473 0.94565 0.97115 0.99595 1.69900 1.36559 1.11463 1.36155 0.85422 0.78403 0.78190 0.79138 1.20517 1.19977 1.19480 0.89640 0.91111 0.86957 0.80202 0.70546 0.89087 0.94878 0.94582 0.91750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.13 9.92 71.24 0.71 -1.42 15 2 C 0.00 0.02 6.92 41.40 0.29 0.31 15 3 C -0.19 -6.86 10.73 22.42 0.24 -6.62 15 4 C -0.06 -2.62 7.17 42.42 0.30 -2.32 15 5 C 0.59 21.17 8.34 70.29 0.59 21.76 15 6 O -0.54 -19.77 17.71 19.85 0.35 -19.42 15 7 O -0.50 -15.09 13.44 -56.35 -0.76 -15.85 15 8 N -0.25 -11.66 11.63 -48.22 -0.56 -12.22 15 9 N -0.25 -10.97 3.03 -317.74 -0.96 -11.94 15 10 C 0.27 12.67 2.93 44.25 0.13 12.80 15 11 H 0.07 3.38 6.55 -2.39 -0.02 3.36 15 12 C -0.14 -6.37 9.14 71.98 0.66 -5.71 15 13 C -0.55 -29.08 8.68 25.60 0.22 -28.86 15 14 H 0.05 2.60 7.81 -2.91 -0.02 2.58 15 15 C 0.03 1.77 5.30 84.65 0.45 2.22 15 16 N -0.90 -46.64 11.32 21.45 0.24 -46.40 15 17 Si 0.96 41.73 29.54 68.60 2.03 43.75 15 18 H -0.28 -12.47 7.11 99.48 0.71 -11.76 15 19 H -0.27 -11.59 7.11 99.48 0.71 -10.88 15 20 H -0.27 -11.14 7.11 99.48 0.71 -10.43 15 21 H 0.08 2.16 8.14 -2.39 -0.02 2.14 15 22 H 0.07 1.95 7.03 -2.39 -0.02 1.94 15 23 H 0.11 2.21 8.14 -2.39 -0.02 2.19 15 24 H 0.18 5.27 8.06 -2.91 -0.02 5.25 15 25 H 0.43 7.33 9.11 -74.06 -0.67 6.66 15 26 H 0.09 4.46 6.07 -2.39 -0.01 4.44 15 27 H 0.03 1.58 8.14 -2.38 -0.02 1.56 15 28 H 0.04 1.48 8.14 -2.39 -0.02 1.46 15 29 H 0.27 13.26 8.31 -92.71 -0.77 12.49 15 Total: -1.00 -63.35 262.62 4.43 -58.92 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: 0.50 Total: 10.99 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: 3.58 Total: -7.85 kcal Atomic # 7 Polarization: -69.28 SS G_CDS: -1.28 Total: -70.56 kcal Atomic # 8 Polarization: -34.86 SS G_CDS: -0.41 Total: -35.27 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.75 kcal Total: -63.35 4.43 -58.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607602439.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.941 kcal (2) G-P(sol) polarization free energy of solvation -63.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds