Wall clock time and date at job start Sun Mar 29 2020 21:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47148 * 2 1 4 4 C 1.53004 * 109.46810 * 119.99852 * 2 1 3 5 5 C 1.50696 * 109.47053 * 184.99899 * 4 2 1 6 6 H 1.08006 * 120.00066 * 359.97438 * 5 4 2 7 7 C 1.37875 * 119.99994 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00000 * 359.72329 * 7 5 4 9 9 Si 1.86800 * 120.00097 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47163 * 269.72575 * 9 7 5 11 11 H 1.48504 * 109.46938 * 29.72349 * 9 7 5 12 12 H 1.48504 * 109.47402 * 149.72126 * 9 7 5 13 13 N 1.46900 * 109.47134 * 239.99938 * 2 1 3 14 14 C 1.47700 * 110.99983 * 44.19859 * 13 2 1 15 15 C 1.52949 * 86.95960 * 140.15760 * 14 13 2 16 16 H 1.08999 * 112.29472 * 83.80560 * 15 14 13 17 17 C 1.50486 * 115.95571 * 213.33997 * 15 14 13 18 18 C 1.51634 * 114.44357 * 66.28254 * 17 15 14 19 19 C 1.52614 * 111.01709 * 46.73892 * 18 17 15 20 20 C 1.52983 * 108.77054 * 296.07888 * 19 18 17 21 21 C 1.48149 * 111.00007 * 139.64046 * 13 2 1 22 22 H 1.08997 * 113.85350 * 104.94541 * 21 13 2 23 23 H 1.09001 * 109.47598 * 295.05658 * 1 2 3 24 24 H 1.09001 * 109.46703 * 55.05252 * 1 2 3 25 25 H 1.08995 * 109.47723 * 175.05101 * 1 2 3 26 26 H 1.08996 * 109.46940 * 64.99926 * 4 2 1 27 27 H 1.08993 * 109.47172 * 305.00190 * 4 2 1 28 28 H 0.96999 * 120.00206 * 0.27374 * 8 7 5 29 29 H 1.08997 * 113.63403 * 254.67551 * 14 13 2 30 30 H 1.09003 * 113.63219 * 25.55190 * 14 13 2 31 31 H 1.09007 * 108.49160 * 187.56875 * 17 15 14 32 32 H 1.09000 * 108.48991 * 305.00112 * 17 15 14 33 33 H 1.09000 * 109.16814 * 286.33990 * 18 17 15 34 34 H 1.09004 * 109.12288 * 167.10684 * 18 17 15 35 35 H 1.09004 * 109.58486 * 176.29565 * 19 18 17 36 36 H 1.09002 * 109.71012 * 55.93585 * 19 18 17 37 37 H 1.08998 * 109.51242 * 303.73342 * 20 19 18 38 38 H 1.09003 * 109.55403 * 183.60821 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5418 -0.6150 1.3128 6 1 4.0790 -0.0862 0.5392 7 6 4.2303 -1.1936 2.3579 8 7 3.5758 -1.8336 3.3022 9 14 6.0920 -1.0624 2.4363 10 1 6.6998 -2.2186 1.7300 11 1 6.5272 0.1996 1.7856 12 1 6.5291 -1.0639 3.8555 13 7 2.0197 -0.6925 -1.1994 14 6 1.2641 -0.2743 -2.3976 15 6 2.5978 -0.2956 -3.1461 16 1 2.8585 -1.2938 -3.4980 17 6 2.7569 0.7281 -4.2376 18 6 2.7956 2.1636 -3.7506 19 6 3.7388 2.3125 -2.5602 20 6 3.1914 1.4898 -1.3924 21 6 3.1903 0.0085 -1.7765 22 1 4.1404 -0.4910 -1.5876 23 1 -0.3634 0.4352 0.9309 24 1 -0.3633 0.5887 -0.8424 25 1 -0.3634 -1.0237 -0.0886 26 1 1.7515 -1.7715 1.2056 27 1 1.6053 -0.2618 2.1370 28 1 2.6091 -1.9020 3.2614 29 1 0.5536 -1.0223 -2.7493 30 1 0.8251 0.7198 -2.3124 31 1 3.6826 0.5201 -4.7743 32 1 1.9260 0.6219 -4.9349 33 1 1.7922 2.4675 -3.4525 34 1 3.1382 2.8066 -4.5614 35 1 3.7996 3.3618 -2.2711 36 1 4.7308 1.9497 -2.8294 37 1 2.1735 1.8085 -1.1681 38 1 3.8209 1.6379 -0.5149 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001643704238.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:54 Heat of formation + Delta-G solvation = 25.598457 kcal Electronic energy + Delta-G solvation = -16519.929252 eV Core-core repulsion = 14169.926129 eV Total energy + Delta-G solvation = -2350.003123 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.09118 -35.61076 -33.64562 -31.97968 -30.71701 -27.38667 -26.49749 -24.87864 -22.87784 -22.70269 -21.21297 -19.06671 -17.28266 -16.61817 -15.99367 -15.63491 -14.75148 -14.04282 -13.68732 -13.52323 -13.32071 -12.77898 -12.52624 -12.15489 -12.07306 -11.62690 -11.38135 -11.21269 -11.01503 -10.83606 -10.79692 -10.55853 -10.34643 -10.15883 -9.99133 -9.60836 -9.60349 -9.32734 -8.35272 -8.19731 -7.85555 -6.20787 -3.87049 3.48583 3.52199 3.66855 4.55464 4.63878 4.67388 4.88248 5.16070 5.22976 5.37596 5.43289 5.56104 5.62921 5.68735 5.71828 5.78551 5.84060 5.88403 6.00881 6.04808 6.12702 6.14026 6.23743 6.27280 6.37411 6.41645 6.54415 6.59682 6.64727 6.81313 6.92010 7.17481 7.44195 7.58283 8.00271 8.39675 8.62616 9.04363 9.82985 11.19428 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.028927 B = 0.009701 C = 0.008107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.732891 B = 2885.700472 C = 3452.991450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.034 3.966 3 H 0.067 0.933 4 C 0.025 3.975 5 C -0.583 4.583 6 H 0.053 0.947 7 C 0.010 3.990 8 N -0.921 5.921 9 Si 1.066 2.934 10 H -0.290 1.290 11 H -0.290 1.290 12 H -0.287 1.287 13 N -0.443 5.443 14 C -0.006 4.006 15 C -0.114 4.114 16 H 0.090 0.910 17 C -0.103 4.103 18 C -0.115 4.115 19 C -0.115 4.115 20 C -0.134 4.134 21 C 0.052 3.948 22 H 0.092 0.908 23 H 0.053 0.947 24 H 0.041 0.959 25 H 0.054 0.946 26 H 0.011 0.989 27 H 0.004 0.996 28 H 0.267 0.733 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.574 7.381 -13.677 15.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.074 4.074 3 H 0.084 0.916 4 C -0.013 4.013 5 C -0.621 4.621 6 H 0.072 0.928 7 C -0.192 4.192 8 N -0.558 5.558 9 Si 0.895 3.105 10 H -0.216 1.216 11 H -0.217 1.217 12 H -0.212 1.212 13 N -0.164 5.164 14 C -0.136 4.136 15 C -0.133 4.133 16 H 0.108 0.892 17 C -0.141 4.141 18 C -0.153 4.153 19 C -0.153 4.153 20 C -0.172 4.172 21 C -0.058 4.058 22 H 0.110 0.890 23 H 0.072 0.928 24 H 0.060 0.940 25 H 0.073 0.927 26 H 0.030 0.970 27 H 0.022 0.978 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.237 6.233 -12.519 14.040 hybrid contribution -1.496 1.165 -0.960 2.125 sum -2.733 7.399 -13.480 15.617 Atomic orbital electron populations 1.22023 0.97009 1.01389 1.00436 1.22560 0.92631 0.98520 0.93712 0.91572 1.19157 0.96873 0.95103 0.90135 1.22085 0.91826 1.37560 1.10645 0.92838 1.25722 1.06452 0.94007 0.93038 1.70729 1.10224 1.40693 1.34177 0.83586 0.75011 0.75905 0.75953 1.21645 1.21650 1.21250 1.69540 1.03087 1.44019 0.99796 1.23796 0.96366 0.99407 0.94003 1.21913 0.97649 0.99497 0.94238 0.89157 1.20536 1.01529 0.94293 0.97722 1.21157 0.99777 0.96409 0.97915 1.21394 0.99120 0.99497 0.95328 1.22019 1.01882 0.94794 0.98477 1.22946 0.97717 0.92907 0.92181 0.88997 0.92771 0.93960 0.92715 0.97027 0.97783 0.92220 0.91100 0.92048 0.92441 0.92329 0.92601 0.92386 0.92277 0.91887 0.91047 0.90221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 8.60 37.16 0.32 -2.40 16 2 C 0.03 0.72 1.86 -67.71 -0.13 0.59 16 3 H 0.07 1.39 4.28 -51.93 -0.22 1.17 16 4 C 0.02 0.65 3.97 -27.88 -0.11 0.54 16 5 C -0.58 -16.51 8.71 -34.44 -0.30 -16.81 16 6 H 0.05 1.46 4.64 -52.48 -0.24 1.21 16 7 C 0.01 0.31 5.46 -17.82 -0.10 0.21 16 8 N -0.92 -29.02 13.65 55.43 0.76 -28.26 16 9 Si 1.07 26.04 29.90 -169.99 -5.08 20.96 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 13 N -0.44 -8.87 6.07 -233.70 -1.42 -10.29 16 14 C -0.01 -0.10 5.65 -8.07 -0.05 -0.15 16 15 C -0.11 -1.69 4.06 -92.28 -0.37 -2.07 16 16 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 17 C -0.10 -1.23 5.53 -28.68 -0.16 -1.38 16 18 C -0.12 -1.33 5.63 -27.62 -0.16 -1.49 16 19 C -0.12 -1.52 5.90 -26.94 -0.16 -1.68 16 20 C -0.13 -2.21 3.68 -26.73 -0.10 -2.31 16 21 C 0.05 0.94 3.20 -72.03 -0.23 0.71 16 22 H 0.09 1.86 7.75 -51.93 -0.40 1.46 16 23 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.04 0.65 6.44 -51.93 -0.33 0.32 16 25 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.01 0.33 8.01 -51.93 -0.42 -0.09 16 27 H 0.00 0.11 8.00 -51.93 -0.42 -0.30 16 28 H 0.27 8.45 7.22 -40.82 -0.29 8.15 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.06 0.93 5.45 -51.93 -0.28 0.65 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.65 7.79 -51.93 -0.40 0.25 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 1.19 5.00 -51.93 -0.26 0.93 16 38 H 0.08 1.50 7.04 -51.93 -0.37 1.14 16 LS Contribution 278.11 15.07 4.19 4.19 Total: -1.00 -30.81 278.11 -9.33 -40.14 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -6.24 Total: -0.51 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: -1.54 Total: -26.24 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: -0.66 Total: -38.55 kcal Atomic # 14 Polarization: 26.04 SS G_CDS: -5.08 Total: 20.96 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.81 -9.33 -40.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001643704238.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.740 kcal (2) G-P(sol) polarization free energy of solvation -30.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds