Wall clock time and date at job start Sun Mar 29 2020 21:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50706 * 119.99552 * 2 1 4 4 C 1.53002 * 109.46925 * 125.00457 * 3 2 1 5 5 H 1.08999 * 110.43756 * 56.08158 * 4 3 2 6 6 C 1.54897 * 110.48400 * 293.54838 * 4 3 2 7 7 C 1.54895 * 102.74679 * 203.38145 * 6 4 3 8 8 C 1.54266 * 104.19552 * 37.93781 * 7 6 4 9 9 H 1.09000 * 110.02870 * 95.67820 * 8 7 6 10 10 N 1.46899 * 110.03174 * 217.05999 * 8 7 6 11 11 C 1.46907 * 110.99864 * 273.54860 * 10 8 7 12 12 H 1.08997 * 109.46784 * 34.99756 * 11 10 8 13 13 C 1.53001 * 109.46879 * 275.00090 * 11 10 8 14 14 C 1.50700 * 109.47235 * 155.00122 * 11 10 8 15 15 H 1.07998 * 119.99731 * 359.97438 * 14 11 10 16 16 C 1.37879 * 120.00068 * 179.97438 * 14 11 10 17 17 N 1.31515 * 119.99909 * 359.97438 * 16 14 11 18 18 Si 1.86799 * 119.99846 * 179.97438 * 16 14 11 19 19 H 1.48504 * 109.47092 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46663 * 120.00058 * 18 16 14 21 21 H 1.48496 * 109.47252 * 239.99932 * 18 16 14 22 22 C 1.53870 * 106.59891 * 336.39164 * 8 7 6 23 23 H 1.08001 * 120.00035 * 179.97438 * 1 2 3 24 24 H 1.08001 * 120.00460 * 359.97438 * 1 2 3 25 25 H 1.07994 * 120.00244 * 180.02562 * 2 1 3 26 26 H 1.09000 * 109.47318 * 244.99691 * 3 2 1 27 27 H 1.09000 * 109.47161 * 5.00322 * 3 2 1 28 28 H 1.08999 * 110.75187 * 321.69260 * 6 4 3 29 29 H 1.08998 * 110.75855 * 84.88167 * 6 4 3 30 30 H 1.08997 * 110.48731 * 156.61855 * 7 6 4 31 31 H 1.09000 * 110.48013 * 279.26209 * 7 6 4 32 32 H 1.00902 * 111.00420 * 37.49919 * 10 8 7 33 33 H 1.08996 * 109.47080 * 59.99968 * 13 11 10 34 34 H 1.09005 * 109.46979 * 180.02562 * 13 11 10 35 35 H 1.09006 * 109.46894 * 299.99499 * 13 11 10 36 36 H 0.97002 * 119.99873 * 179.97438 * 17 16 14 37 37 H 1.09000 * 110.03313 * 240.71309 * 22 8 7 38 38 H 1.09006 * 110.03079 * 119.28533 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3332 1.1816 5 1 3.7037 0.4732 1.1449 6 6 2.2583 1.3590 2.5215 7 6 3.2849 1.9825 3.4996 8 6 4.0005 3.0610 2.6602 9 1 3.5367 4.0331 2.8277 10 7 5.4242 3.1146 3.0180 11 6 5.6454 4.0049 4.1655 12 1 4.7997 3.9331 4.8493 13 6 5.7823 5.4470 3.6731 14 6 6.9068 3.5969 4.8820 15 1 7.4860 2.7597 4.5213 16 6 7.3215 4.2923 5.9979 17 7 6.6165 5.3121 6.4368 18 14 8.8847 3.7861 6.8865 19 1 9.4895 2.6178 6.1975 20 1 9.8468 4.9173 6.8788 21 1 8.5609 3.4212 8.2890 22 6 3.8415 2.6481 1.1864 23 1 -0.5400 -0.9353 -0.0004 24 1 -0.5401 0.9353 0.0004 25 1 1.8500 -0.9352 -0.0004 26 1 2.6212 1.4028 -0.9313 27 1 1.3584 2.1317 0.0896 28 1 1.3707 1.9865 2.4414 29 1 1.9891 0.3493 2.8315 30 1 2.7751 2.4365 4.3494 31 1 3.9957 1.2287 3.8381 32 1 5.7859 2.1908 3.2021 33 1 4.8699 5.7421 3.1549 34 1 5.9469 6.1075 4.5245 35 1 6.6281 5.5187 2.9892 36 1 6.9080 5.8011 7.2222 37 1 4.8210 2.4870 0.7361 38 1 3.3007 3.4199 0.6387 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001651494508.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:25 Heat of formation + Delta-G solvation = -6.029340 kcal Electronic energy + Delta-G solvation = -15407.882853 eV Core-core repulsion = 13056.508246 eV Total energy + Delta-G solvation = -2351.374607 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.63958 -35.65547 -33.94582 -31.93663 -29.44277 -28.56479 -26.48926 -25.12248 -23.98555 -20.48912 -19.82436 -19.79840 -19.09563 -16.45804 -15.45599 -15.26760 -14.80374 -14.28537 -13.78761 -13.52167 -13.24425 -12.76020 -12.58432 -11.91753 -11.71292 -11.50078 -11.23796 -11.05717 -10.86638 -10.75629 -10.61918 -10.49255 -10.26166 -10.21158 -10.11027 -9.99153 -9.71642 -9.28213 -8.77618 -8.45022 -7.14975 -6.00040 -4.06044 2.23216 3.29804 3.37635 3.41909 4.42304 4.73738 4.86381 5.00374 5.14345 5.21804 5.30950 5.43552 5.66434 5.73168 5.75029 5.81668 5.91856 6.00760 6.11593 6.14835 6.16508 6.30003 6.42118 6.56083 6.66701 6.72049 6.72548 6.78748 6.94035 7.19551 7.29966 7.59290 7.82262 7.95364 8.31857 8.47293 8.75097 9.06370 9.59912 11.06326 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.057287 B = 0.005175 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.653161 B = 5409.419838 C = 5534.346168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.143 4.143 3 C -0.088 4.088 4 C -0.088 4.088 5 H 0.072 0.928 6 C -0.113 4.113 7 C -0.151 4.151 8 C 0.086 3.914 9 H 0.070 0.930 10 N -0.683 5.683 11 C 0.210 3.790 12 H 0.001 0.999 13 C -0.124 4.124 14 C -0.516 4.516 15 H 0.059 0.941 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.895 3.105 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.285 1.285 22 C -0.110 4.110 23 H 0.092 0.908 24 H 0.094 0.906 25 H 0.105 0.895 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.330 0.670 33 H 0.003 0.997 34 H 0.079 0.921 35 H 0.030 0.970 36 H 0.260 0.740 37 H 0.073 0.927 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.366 -7.654 -9.766 15.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.161 4.161 3 C -0.125 4.125 4 C -0.107 4.107 5 H 0.090 0.910 6 C -0.151 4.151 7 C -0.190 4.190 8 C -0.026 4.026 9 H 0.088 0.912 10 N -0.313 5.313 11 C 0.103 3.897 12 H 0.019 0.981 13 C -0.183 4.183 14 C -0.555 4.555 15 H 0.077 0.923 16 C -0.141 4.141 17 N -0.529 5.529 18 Si 0.723 3.277 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.148 4.148 23 H 0.111 0.889 24 H 0.112 0.888 25 H 0.123 0.877 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.148 0.852 33 H 0.022 0.978 34 H 0.098 0.902 35 H 0.049 0.951 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.187 -7.003 -10.079 15.331 hybrid contribution 0.427 -0.759 1.349 1.606 sum -8.760 -7.762 -8.730 14.601 Atomic orbital electron populations 1.23782 0.96007 1.01493 1.02924 1.23009 0.95980 0.98730 0.98345 1.20853 0.98012 0.94959 0.98695 1.21974 0.96174 0.98764 0.93794 0.91003 1.22473 0.97744 0.99989 0.94919 1.23124 0.98545 0.99032 0.98299 1.22133 0.90246 0.97217 0.92964 0.91190 1.60847 1.12286 1.15230 1.42957 1.19095 0.95533 0.89654 0.85458 0.98129 1.21723 0.96661 0.99632 1.00238 1.21322 1.08650 1.14980 1.10508 0.92274 1.24922 0.97091 0.94965 0.97077 1.69913 1.38706 1.20024 1.24303 0.86491 0.83306 0.78522 0.79373 1.19776 1.21005 1.21142 1.22267 0.99939 0.95435 0.97193 0.88936 0.88779 0.87691 0.91116 0.91564 0.92013 0.92421 0.92183 0.91663 0.85219 0.97803 0.90213 0.95078 0.93056 0.90850 0.92413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.93 14.32 29.02 0.42 -1.51 16 2 C -0.14 -1.44 9.06 -36.02 -0.33 -1.76 16 3 C -0.09 -0.95 5.02 -27.88 -0.14 -1.09 16 4 C -0.09 -1.12 2.89 -88.96 -0.26 -1.37 16 5 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 6 C -0.11 -1.51 5.87 -24.73 -0.15 -1.66 16 7 C -0.15 -2.48 6.29 -25.07 -0.16 -2.64 16 8 C 0.09 1.55 3.01 -66.60 -0.20 1.35 16 9 H 0.07 1.37 7.16 -51.93 -0.37 1.00 16 10 N -0.68 -14.67 5.97 -99.78 -0.60 -15.27 16 11 C 0.21 5.38 2.44 -68.86 -0.17 5.22 16 12 H 0.00 0.03 7.72 -51.93 -0.40 -0.37 16 13 C -0.12 -3.16 9.18 37.16 0.34 -2.82 16 14 C -0.52 -14.30 8.59 -34.44 -0.30 -14.60 16 15 H 0.06 1.62 7.62 -52.49 -0.40 1.22 16 16 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 17 N -0.89 -25.72 11.32 55.43 0.63 -25.09 16 18 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 C -0.11 -1.64 6.17 -25.62 -0.16 -1.80 16 23 H 0.09 0.76 8.06 -52.49 -0.42 0.34 16 24 H 0.09 0.85 7.84 -52.49 -0.41 0.44 16 25 H 0.11 0.99 8.06 -52.49 -0.42 0.57 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.71 7.75 -51.93 -0.40 0.31 16 28 H 0.06 0.80 8.02 -51.93 -0.42 0.38 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.06 1.11 7.58 -51.93 -0.39 0.72 16 32 H 0.33 6.98 7.63 -39.29 -0.30 6.68 16 33 H 0.00 0.07 7.45 -51.93 -0.39 -0.32 16 34 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 35 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.07 1.15 7.92 -51.93 -0.41 0.74 16 38 H 0.06 0.81 7.84 -51.93 -0.41 0.40 16 LS Contribution 302.02 15.07 4.55 4.55 Total: -1.00 -28.10 302.02 -8.34 -36.43 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -6.71 Total: 4.03 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: -1.19 Total: -21.07 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.03 Total: -40.36 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.10 -8.34 -36.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651494508.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.403 kcal (2) G-P(sol) polarization free energy of solvation -28.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds