Wall clock time and date at job start Sun Mar 29 2020 21:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50706 * 119.99552 * 2 1 4 4 C 1.53002 * 109.46925 * 125.00457 * 3 2 1 5 5 H 1.08999 * 110.43756 * 56.08158 * 4 3 2 6 6 C 1.54897 * 110.48400 * 293.54838 * 4 3 2 7 7 C 1.54895 * 102.74679 * 203.38145 * 6 4 3 8 8 C 1.54266 * 104.19552 * 37.93781 * 7 6 4 9 9 H 1.09000 * 110.02870 * 95.67820 * 8 7 6 10 10 N 1.46899 * 110.03174 * 217.05999 * 8 7 6 11 11 C 1.46907 * 110.99864 * 273.54860 * 10 8 7 12 12 H 1.08997 * 109.46784 * 34.99756 * 11 10 8 13 13 C 1.53001 * 109.46879 * 275.00090 * 11 10 8 14 14 C 1.50700 * 109.47235 * 155.00122 * 11 10 8 15 15 H 1.07998 * 119.99731 * 359.97438 * 14 11 10 16 16 C 1.37879 * 120.00068 * 179.97438 * 14 11 10 17 17 N 1.31515 * 119.99909 * 359.97438 * 16 14 11 18 18 Si 1.86799 * 119.99846 * 179.97438 * 16 14 11 19 19 H 1.48504 * 109.47092 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46663 * 120.00058 * 18 16 14 21 21 H 1.48496 * 109.47252 * 239.99932 * 18 16 14 22 22 C 1.53870 * 106.59891 * 336.39164 * 8 7 6 23 23 H 1.08001 * 120.00035 * 179.97438 * 1 2 3 24 24 H 1.08001 * 120.00460 * 359.97438 * 1 2 3 25 25 H 1.07994 * 120.00244 * 180.02562 * 2 1 3 26 26 H 1.09000 * 109.47318 * 244.99691 * 3 2 1 27 27 H 1.09000 * 109.47161 * 5.00322 * 3 2 1 28 28 H 1.08999 * 110.75187 * 321.69260 * 6 4 3 29 29 H 1.08998 * 110.75855 * 84.88167 * 6 4 3 30 30 H 1.08997 * 110.48731 * 156.61855 * 7 6 4 31 31 H 1.09000 * 110.48013 * 279.26209 * 7 6 4 32 32 H 1.00902 * 111.00420 * 37.49919 * 10 8 7 33 33 H 1.08996 * 109.47080 * 59.99968 * 13 11 10 34 34 H 1.09005 * 109.46979 * 180.02562 * 13 11 10 35 35 H 1.09006 * 109.46894 * 299.99499 * 13 11 10 36 36 H 0.97002 * 119.99873 * 179.97438 * 17 16 14 37 37 H 1.09000 * 110.03313 * 240.71309 * 22 8 7 38 38 H 1.09006 * 110.03079 * 119.28533 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3332 1.1816 5 1 3.7037 0.4732 1.1449 6 6 2.2583 1.3590 2.5215 7 6 3.2849 1.9825 3.4996 8 6 4.0005 3.0610 2.6602 9 1 3.5367 4.0331 2.8277 10 7 5.4242 3.1146 3.0180 11 6 5.6454 4.0049 4.1655 12 1 4.7997 3.9331 4.8493 13 6 5.7823 5.4470 3.6731 14 6 6.9068 3.5969 4.8820 15 1 7.4860 2.7597 4.5213 16 6 7.3215 4.2923 5.9979 17 7 6.6165 5.3121 6.4368 18 14 8.8847 3.7861 6.8865 19 1 9.4895 2.6178 6.1975 20 1 9.8468 4.9173 6.8788 21 1 8.5609 3.4212 8.2890 22 6 3.8415 2.6481 1.1864 23 1 -0.5400 -0.9353 -0.0004 24 1 -0.5401 0.9353 0.0004 25 1 1.8500 -0.9352 -0.0004 26 1 2.6212 1.4028 -0.9313 27 1 1.3584 2.1317 0.0896 28 1 1.3707 1.9865 2.4414 29 1 1.9891 0.3493 2.8315 30 1 2.7751 2.4365 4.3494 31 1 3.9957 1.2287 3.8381 32 1 5.7859 2.1908 3.2021 33 1 4.8699 5.7421 3.1549 34 1 5.9469 6.1075 4.5245 35 1 6.6281 5.5187 2.9892 36 1 6.9080 5.8011 7.2222 37 1 4.8210 2.4870 0.7361 38 1 3.3007 3.4199 0.6387 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001651494508.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:24 Heat of formation + Delta-G solvation = -21.492602 kcal Electronic energy + Delta-G solvation = -15408.553390 eV Core-core repulsion = 13056.508246 eV Total energy + Delta-G solvation = -2352.045144 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.92997 -37.16607 -35.31994 -33.69912 -30.81257 -30.02180 -27.99373 -27.15314 -25.19666 -22.16321 -21.28180 -20.61177 -20.45102 -18.46336 -17.04112 -16.50736 -16.25389 -15.58501 -15.33949 -14.88517 -14.50790 -14.32676 -13.91612 -13.42380 -13.35639 -13.03422 -12.83723 -12.52968 -12.47038 -12.20608 -12.12756 -12.05841 -11.84675 -11.69319 -11.60059 -11.26559 -11.21124 -10.85738 -10.57551 -10.06473 -8.93916 -8.13251 -6.27308 1.40633 1.42337 1.50478 1.54299 2.41421 3.15226 3.57133 3.77384 3.84144 4.00607 4.18459 4.40629 4.54370 4.58613 4.67846 4.73361 4.78560 4.85028 4.85722 4.96984 5.05602 5.08223 5.13223 5.17380 5.22789 5.27040 5.34079 5.41743 5.55498 5.59469 5.72629 5.84830 5.88541 5.99523 6.23021 6.52916 6.83300 7.04772 7.43429 8.92712 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.057287 B = 0.005175 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.653161 B = 5409.419838 C = 5534.346168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.155 4.155 3 C -0.083 4.083 4 C -0.079 4.079 5 H 0.075 0.925 6 C -0.102 4.102 7 C -0.149 4.149 8 C 0.080 3.920 9 H 0.051 0.949 10 N -0.681 5.681 11 C 0.216 3.784 12 H -0.032 1.032 13 C -0.113 4.113 14 C -0.536 4.536 15 H 0.058 0.942 16 C 0.012 3.988 17 N -0.919 5.919 18 Si 0.963 3.037 19 H -0.266 1.266 20 H -0.280 1.280 21 H -0.280 1.280 22 C -0.102 4.102 23 H 0.104 0.896 24 H 0.096 0.904 25 H 0.111 0.889 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.043 0.957 31 H 0.057 0.943 32 H 0.331 0.669 33 H 0.019 0.981 34 H 0.056 0.944 35 H 0.027 0.973 36 H 0.262 0.738 37 H 0.067 0.933 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.631 -8.922 -10.719 16.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.173 4.173 3 C -0.120 4.120 4 C -0.097 4.097 5 H 0.093 0.907 6 C -0.140 4.140 7 C -0.189 4.189 8 C -0.031 4.031 9 H 0.069 0.931 10 N -0.311 5.311 11 C 0.107 3.893 12 H -0.014 1.014 13 C -0.171 4.171 14 C -0.574 4.574 15 H 0.076 0.924 16 C -0.187 4.187 17 N -0.559 5.559 18 Si 0.788 3.212 19 H -0.190 1.190 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.140 4.140 23 H 0.122 0.878 24 H 0.115 0.885 25 H 0.129 0.871 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.149 0.851 33 H 0.038 0.962 34 H 0.074 0.926 35 H 0.046 0.954 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.467 -8.282 -11.051 16.743 hybrid contribution 0.452 -0.345 1.638 1.734 sum -9.015 -8.628 -9.413 15.630 Atomic orbital electron populations 1.23954 0.95931 1.02254 1.01645 1.23023 0.96252 0.98545 0.99469 1.20781 0.97640 0.95618 0.97931 1.21893 0.96221 0.97367 0.94268 0.90687 1.22413 0.96962 1.00466 0.94177 1.23037 0.99096 0.98366 0.98355 1.22251 0.88209 0.97030 0.95569 0.93103 1.60798 1.14843 1.14746 1.40680 1.18881 0.93722 0.90600 0.86090 1.01413 1.21552 0.97184 0.99206 0.99187 1.21636 1.09423 1.15161 1.11196 0.92353 1.25748 1.00239 0.94888 0.97831 1.70039 1.40252 1.20869 1.24703 0.85436 0.79317 0.78321 0.78111 1.19023 1.20583 1.20626 1.22178 1.00319 0.97097 0.94441 0.87759 0.88546 0.87053 0.90367 0.91427 0.91348 0.91097 0.93781 0.92456 0.85089 0.96248 0.92556 0.95413 0.92894 0.91435 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.21 14.32 67.79 0.97 -2.24 16 2 C -0.15 -2.69 9.06 25.65 0.23 -2.45 16 3 C -0.08 -1.56 5.02 29.85 0.15 -1.41 16 4 C -0.08 -1.82 2.89 -9.72 -0.03 -1.85 16 5 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 6 C -0.10 -2.55 5.87 31.89 0.19 -2.36 16 7 C -0.15 -4.91 6.29 31.67 0.20 -4.71 16 8 C 0.08 2.89 3.01 45.64 0.14 3.03 16 9 H 0.05 2.02 7.16 -2.39 -0.02 2.00 16 10 N -0.68 -29.51 5.97 -469.60 -2.80 -32.32 16 11 C 0.22 11.30 2.44 44.17 0.11 11.41 16 12 H -0.03 -1.84 7.72 -2.39 -0.02 -1.86 16 13 C -0.11 -5.84 9.18 71.98 0.66 -5.18 16 14 C -0.54 -30.03 8.59 25.60 0.22 -29.81 16 15 H 0.06 3.20 7.62 -2.91 -0.02 3.18 16 16 C 0.01 0.67 5.30 84.65 0.45 1.12 16 17 N -0.92 -53.89 11.32 21.45 0.24 -53.65 16 18 Si 0.96 44.02 29.54 68.60 2.03 46.04 16 19 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 22 C -0.10 -2.90 6.17 31.31 0.19 -2.71 16 23 H 0.10 1.41 8.06 -2.91 -0.02 1.39 16 24 H 0.10 1.49 7.84 -2.91 -0.02 1.46 16 25 H 0.11 1.79 8.06 -2.91 -0.02 1.76 16 26 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.07 1.27 7.75 -2.39 -0.02 1.25 16 28 H 0.07 1.63 8.02 -2.39 -0.02 1.61 16 29 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.06 1.96 7.58 -2.39 -0.02 1.94 16 32 H 0.33 14.11 7.63 -89.69 -0.68 13.43 16 33 H 0.02 0.89 7.45 -2.39 -0.02 0.87 16 34 H 0.06 3.17 6.07 -2.38 -0.01 3.16 16 35 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 37 H 0.07 2.02 7.92 -2.39 -0.02 2.00 16 38 H 0.07 1.80 7.84 -2.38 -0.02 1.78 16 Total: -1.00 -59.80 302.02 3.26 -56.53 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.32 Total: 20.55 kcal Atomic # 6 Polarization: -40.65 SS G_CDS: 3.48 Total: -37.17 kcal Atomic # 7 Polarization: -83.40 SS G_CDS: -2.56 Total: -85.96 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -59.80 3.26 -56.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651494508.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.042 kcal (2) G-P(sol) polarization free energy of solvation -59.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds