Wall clock time and date at job start Sun Mar 29 2020 21:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46493 * 109.46873 * 2 1 4 4 C 1.36685 * 120.00222 * 264.61675 * 3 2 1 5 5 H 1.07998 * 119.99654 * 136.01302 * 4 3 2 6 6 C 1.39157 * 119.99863 * 316.00960 * 4 3 2 7 7 N 1.31289 * 120.00051 * 2.41381 * 6 4 3 8 8 Si 1.86803 * 119.99834 * 182.40632 * 6 4 3 9 9 H 1.48496 * 109.47118 * 90.00353 * 8 6 4 10 10 H 1.48497 * 109.46960 * 210.00319 * 8 6 4 11 11 H 1.48504 * 109.47061 * 330.00358 * 8 6 4 12 12 C 1.34777 * 119.99979 * 84.62428 * 3 2 1 13 13 O 1.21649 * 120.00446 * 174.79672 * 12 3 2 14 14 C 1.47292 * 120.00103 * 354.52014 * 12 3 2 15 15 C 1.36992 * 126.96018 * 184.26985 * 14 12 3 16 16 C 1.41172 * 103.84039 * 179.87310 * 15 14 12 17 17 C 1.50699 * 126.69500 * 180.09962 * 16 15 14 18 18 N 1.30173 * 106.61254 * 0.39042 * 16 15 14 19 19 O 1.20883 * 112.01084 * 359.74497 * 18 16 15 20 20 H 1.08998 * 109.46980 * 299.99462 * 1 2 3 21 21 H 1.08993 * 109.46934 * 59.99588 * 1 2 3 22 22 H 1.09006 * 109.46990 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46758 * 240.00034 * 2 1 3 24 24 H 1.09000 * 109.46898 * 119.99988 * 2 1 3 25 25 H 0.97006 * 120.00144 * 179.97438 * 7 6 4 26 26 H 1.07997 * 128.08523 * 359.97438 * 15 14 12 27 27 H 1.08998 * 109.47406 * 270.32253 * 17 16 15 28 28 H 1.09002 * 109.46893 * 30.32391 * 17 16 15 29 29 H 1.09004 * 109.47486 * 150.31929 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3508 1.9886 -1.1785 5 1 2.0369 3.0040 -1.3699 6 6 3.0938 1.2985 -2.1315 7 7 3.4350 0.0486 -1.9190 8 14 3.6057 2.1505 -3.7131 9 1 4.9251 2.8037 -3.5189 10 1 3.7051 1.1490 -4.8050 11 1 2.5937 3.1761 -4.0728 12 6 2.1398 2.0530 1.1621 13 8 2.6335 3.1647 1.1733 14 6 1.6693 1.4436 2.4177 15 6 1.6476 2.0250 3.6580 16 6 1.1078 1.0218 4.4918 17 6 0.8556 1.1224 5.9741 18 7 0.8762 -0.0092 3.7316 19 8 1.1787 0.1999 2.5801 20 1 -0.3633 0.5137 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 3.9526 -0.4326 -2.5835 26 1 1.9671 3.0192 3.9333 27 1 1.7431 0.7967 6.5166 28 1 0.6294 2.1563 6.2349 29 1 0.0118 0.4870 6.2432 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049519.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:18 Heat of formation + Delta-G solvation = 30.578786 kcal Electronic energy + Delta-G solvation = -15615.256016 eV Core-core repulsion = 12928.376757 eV Total energy + Delta-G solvation = -2686.879259 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.38901 -38.50810 -35.32796 -34.29594 -32.28762 -31.09436 -29.53013 -28.39752 -25.59911 -23.10353 -22.40143 -21.57393 -19.29372 -17.34761 -17.19842 -16.45794 -15.57236 -15.12275 -14.26891 -13.78117 -13.45909 -13.26769 -13.19515 -13.00260 -12.48920 -12.35141 -11.83269 -11.77943 -11.17554 -10.97536 -10.86214 -10.61812 -10.36412 -10.06434 -9.63675 -9.07547 -8.98408 -8.92059 -7.61839 -6.41328 -4.21942 1.53776 2.50566 3.14603 3.20822 3.23624 3.49651 4.03573 4.09929 4.45996 4.59120 4.97295 5.05352 5.49606 5.54088 5.59832 5.74532 5.93677 5.97584 6.14586 6.32051 6.38526 6.43842 6.69518 6.96172 7.28705 7.53678 8.11278 8.31451 8.64829 8.94953 9.15350 9.75010 10.55229 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.051115 B = 0.008134 C = 0.007430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.647873 B = 3441.662651 C = 3767.391833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.079 3.921 3 N -0.410 5.410 4 C -0.305 4.305 5 H 0.094 0.906 6 C 0.043 3.957 7 N -0.867 5.867 8 Si 0.932 3.068 9 H -0.274 1.274 10 H -0.281 1.281 11 H -0.267 1.267 12 C 0.520 3.480 13 O -0.559 6.559 14 C -0.034 4.034 15 C -0.197 4.197 16 C 0.004 3.996 17 C -0.069 4.069 18 N -0.374 5.374 19 O 0.114 5.886 20 H 0.037 0.963 21 H 0.054 0.946 22 H 0.053 0.947 23 H 0.135 0.865 24 H 0.057 0.943 25 H 0.274 0.726 26 H 0.173 0.827 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.225 -0.933 6.934 8.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.044 4.044 3 N -0.127 5.127 4 C -0.433 4.433 5 H 0.112 0.888 6 C -0.163 4.163 7 N -0.505 5.505 8 Si 0.758 3.242 9 H -0.199 1.199 10 H -0.207 1.207 11 H -0.192 1.192 12 C 0.306 3.694 13 O -0.443 6.443 14 C -0.100 4.100 15 C -0.221 4.221 16 C -0.154 4.154 17 C -0.127 4.127 18 N -0.080 5.080 19 O 0.047 5.953 20 H 0.056 0.944 21 H 0.073 0.927 22 H 0.072 0.928 23 H 0.152 0.848 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.191 0.809 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.374 -1.774 7.013 8.453 hybrid contribution 0.527 0.996 -0.555 1.256 sum -3.846 -0.779 6.457 7.556 Atomic orbital electron populations 1.22142 0.97897 1.00638 1.00898 1.22153 0.92089 0.84770 1.05409 1.43421 1.52892 1.12110 1.04239 1.19493 1.32170 1.00010 0.91627 0.88836 1.25641 0.94634 0.95627 1.00368 1.69523 1.35768 1.09082 1.36117 0.85850 0.79568 0.78988 0.79844 1.19935 1.20690 1.19160 1.16966 0.84326 0.87393 0.80741 1.90693 1.48807 1.20223 1.84547 1.25109 1.00667 0.85402 0.98818 1.22652 1.06276 1.02250 0.90896 1.23468 1.02338 0.90671 0.98939 1.20097 1.02609 1.03254 0.86735 1.73641 1.19011 1.24116 0.91244 1.85208 1.58969 1.29519 1.21644 0.94358 0.92691 0.92779 0.84788 0.92525 0.91546 0.80935 0.90478 0.90242 0.90839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 9.68 37.16 0.36 -2.72 15 2 C 0.08 1.80 5.21 -4.04 -0.02 1.78 15 3 N -0.41 -10.53 2.53 -116.10 -0.29 -10.83 15 4 C -0.30 -8.22 8.83 -15.05 -0.13 -8.35 15 5 H 0.09 2.56 7.83 -52.49 -0.41 2.15 15 6 C 0.04 1.09 5.36 -17.44 -0.09 1.00 15 7 N -0.87 -22.48 10.73 55.51 0.60 -21.89 15 8 Si 0.93 20.02 29.56 -169.99 -5.02 15.00 15 9 H -0.27 -5.97 7.11 56.52 0.40 -5.57 15 10 H -0.28 -5.86 7.11 56.52 0.40 -5.46 15 11 H -0.27 -5.64 7.11 56.52 0.40 -5.24 15 12 C 0.52 13.22 7.57 -12.58 -0.10 13.13 15 13 O -0.56 -15.63 16.89 5.23 0.09 -15.54 15 14 C -0.03 -0.73 6.51 -36.35 -0.24 -0.96 15 15 C -0.20 -3.65 10.92 -38.92 -0.42 -4.08 15 16 C 0.00 0.06 7.31 -82.18 -0.60 -0.54 15 17 C -0.07 -0.79 10.47 36.00 0.38 -0.41 15 18 N -0.37 -7.10 12.04 33.53 0.40 -6.70 15 19 O 0.11 2.33 6.63 15.46 0.10 2.44 15 20 H 0.04 0.74 6.61 -51.93 -0.34 0.40 15 21 H 0.05 1.08 8.14 -51.93 -0.42 0.66 15 22 H 0.05 0.92 8.14 -51.93 -0.42 0.49 15 23 H 0.13 3.28 5.19 -51.93 -0.27 3.01 15 24 H 0.06 1.26 5.72 -51.93 -0.30 0.97 15 25 H 0.27 6.64 8.31 -40.82 -0.34 6.30 15 26 H 0.17 2.86 8.06 -52.49 -0.42 2.43 15 27 H 0.08 0.77 8.14 -51.93 -0.42 0.35 15 28 H 0.08 0.74 8.14 -51.93 -0.42 0.32 15 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 15 LS Contribution 253.97 15.07 3.83 3.83 Total: -1.00 -29.53 253.97 -4.16 -33.69 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -2.99 Total: 1.17 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -0.87 Total: -1.16 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.70 Total: -39.41 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.19 Total: -13.11 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -29.53 -4.16 -33.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049519.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.272 kcal (2) G-P(sol) polarization free energy of solvation -29.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds