Wall clock time and date at job start Sun Mar 29 2020 21:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.46959 * 2 1 4 4 C 1.34332 * 126.44280 * 90.00343 * 3 2 1 5 5 N 1.34471 * 107.66856 * 180.02562 * 4 3 2 6 6 C 1.30253 * 108.70602 * 0.02562 * 5 4 3 7 7 C 1.50696 * 125.62276 * 180.26292 * 6 5 4 8 8 N 1.46502 * 109.47064 * 89.69084 * 7 6 5 9 9 C 1.34780 * 120.00027 * 179.97438 * 8 7 6 10 10 O 1.21688 * 119.99707 * 0.02562 * 9 8 7 11 11 C 1.46372 * 119.99785 * 180.02562 * 9 8 7 12 12 H 1.07988 * 120.00264 * 0.02562 * 11 9 8 13 13 C 1.40060 * 119.99470 * 180.02562 * 11 9 8 14 14 N 1.30674 * 120.00144 * 359.97438 * 13 11 9 15 15 Si 1.86791 * 119.99558 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47637 * 60.00028 * 15 13 11 17 17 H 1.48505 * 109.47075 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47168 * 299.99498 * 15 13 11 19 19 O 1.33974 * 108.75653 * 359.97438 * 6 5 4 20 20 H 1.09003 * 109.46851 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.46637 * 299.99324 * 1 2 3 22 22 H 1.09000 * 109.47334 * 59.99698 * 1 2 3 23 23 H 1.08999 * 109.46637 * 240.00676 * 2 1 3 24 24 H 1.08991 * 109.47564 * 120.00414 * 2 1 3 25 25 H 1.08005 * 126.16232 * 0.02562 * 4 3 2 26 26 H 1.09003 * 109.46949 * 209.69285 * 7 6 5 27 27 H 1.09000 * 109.47067 * 329.69047 * 7 6 5 28 28 H 0.96998 * 120.00435 * 0.02562 * 8 7 6 29 29 H 0.96989 * 119.99852 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2983 2.1731 1.0806 5 7 2.7221 3.3737 0.6479 6 6 2.7207 3.3726 -0.6547 7 6 3.1331 4.5249 -1.5339 8 7 4.5684 4.4364 -1.8137 9 6 5.1630 5.3670 -2.5864 10 8 4.5077 6.2810 -3.0510 11 6 6.5969 5.2782 -2.8664 12 1 7.1783 4.4668 -2.4543 13 6 7.2149 6.2456 -3.6689 14 7 6.5112 7.2271 -4.1679 15 14 9.0446 6.1318 -4.0268 16 1 9.3347 4.8514 -4.7209 17 1 9.4510 7.2672 -4.8935 18 1 9.8029 6.1862 -2.7512 19 8 2.2982 2.1758 -1.0840 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3632 0.5137 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 1.8933 -0.5137 -0.8901 24 1 1.8934 -0.5138 0.8898 25 1 2.1912 1.8686 2.1113 26 1 2.5770 4.4844 -2.4705 27 1 2.9194 5.4648 -1.0249 28 1 5.0907 3.7076 -1.4436 29 1 6.9391 7.8968 -4.7239 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234137083.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:01 Heat of formation + Delta-G solvation = -26.234411 kcal Electronic energy + Delta-G solvation = -14584.835855 eV Core-core repulsion = 11895.492990 eV Total energy + Delta-G solvation = -2689.342865 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.19997 -37.36848 -34.65610 -34.54211 -33.32275 -32.31220 -29.45580 -27.03934 -25.33156 -23.57202 -21.93556 -20.79219 -19.80343 -17.67162 -16.70414 -16.36266 -15.35298 -15.05435 -14.83104 -14.33097 -14.02390 -13.51407 -13.26001 -12.81569 -12.71161 -12.18902 -11.93595 -11.52278 -11.43696 -11.24517 -11.12837 -10.92657 -10.49701 -10.33333 -10.27959 -8.87084 -8.69295 -7.68621 -7.67016 -6.22108 -4.67903 1.50610 2.73175 2.80371 3.16047 3.20731 3.22990 4.08561 4.21621 4.54101 4.61305 4.81087 4.93772 4.94728 5.11175 5.25666 5.49530 5.53714 5.71089 5.80515 5.92048 6.02582 6.14739 6.22760 6.43070 7.41067 7.78711 7.90664 7.94190 8.26882 8.98868 9.41126 10.53675 10.71715 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.056997 B = 0.005130 C = 0.004980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.134183 B = 5456.398430 C = 5621.209554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.036 4.036 3 C -0.054 4.054 4 C -0.043 4.043 5 N -0.474 5.474 6 C 0.194 3.806 7 C 0.227 3.773 8 N -0.762 5.762 9 C 0.557 3.443 10 O -0.578 6.578 11 C -0.542 4.542 12 H 0.069 0.931 13 C 0.087 3.913 14 N -0.766 5.766 15 Si 0.911 3.089 16 H -0.268 1.268 17 H -0.280 1.280 18 H -0.267 1.267 19 O -0.196 6.196 20 H 0.066 0.934 21 H 0.060 0.940 22 H 0.059 0.941 23 H 0.083 0.917 24 H 0.095 0.905 25 H 0.180 0.820 26 H 0.079 0.921 27 H 0.095 0.905 28 H 0.384 0.616 29 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.589 -13.333 7.375 17.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.074 4.074 3 C -0.108 4.108 4 C -0.182 4.182 5 N -0.203 5.203 6 C -0.013 4.013 7 C 0.102 3.898 8 N -0.420 5.420 9 C 0.362 3.638 10 O -0.460 6.460 11 C -0.578 4.578 12 H 0.087 0.913 13 C -0.133 4.133 14 N -0.395 5.395 15 Si 0.736 3.264 16 H -0.193 1.193 17 H -0.205 1.205 18 H -0.192 1.192 19 O -0.082 6.082 20 H 0.085 0.915 21 H 0.079 0.921 22 H 0.078 0.922 23 H 0.101 0.899 24 H 0.113 0.887 25 H 0.197 0.803 26 H 0.097 0.903 27 H 0.112 0.888 28 H 0.216 0.784 29 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.926 -11.944 7.211 16.046 hybrid contribution 0.904 -1.058 -0.213 1.408 sum -7.022 -13.003 6.997 16.351 Atomic orbital electron populations 1.21804 0.93865 1.02343 1.02785 1.20019 0.96324 0.86723 1.04299 1.23459 1.06187 0.96263 0.84899 1.23069 1.04831 0.90125 1.00154 1.70506 1.18091 1.22331 1.09379 1.26728 0.98126 0.86046 0.90357 1.19263 0.86420 0.88966 0.95153 1.46245 1.05383 1.32528 1.57893 1.18247 0.88440 0.80029 0.77050 1.90615 1.65880 1.34941 1.54601 1.20801 0.91850 1.12032 1.33160 0.91309 1.25717 0.99553 0.94073 0.93961 1.70001 1.36427 1.09220 1.23840 0.86380 0.82748 0.78391 0.78921 1.19261 1.20497 1.19221 1.84439 1.63669 1.23662 1.36438 0.91510 0.92118 0.92212 0.89883 0.88662 0.80263 0.90311 0.88759 0.78430 0.91913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.89 37.16 0.37 -0.77 15 2 C -0.04 -0.31 6.49 -27.88 -0.18 -0.49 15 3 C -0.05 -0.72 6.64 -35.69 -0.24 -0.96 15 4 C -0.04 -0.60 11.80 -17.77 -0.21 -0.81 15 5 N -0.47 -8.41 11.29 -11.10 -0.13 -8.54 15 6 C 0.19 3.51 7.71 -12.95 -0.10 3.41 15 7 C 0.23 4.59 6.30 -5.19 -0.03 4.56 15 8 N -0.76 -17.66 5.54 -62.90 -0.35 -18.01 15 9 C 0.56 15.95 7.75 -12.99 -0.10 15.85 15 10 O -0.58 -18.60 15.02 5.20 0.08 -18.53 15 11 C -0.54 -15.37 9.54 -35.63 -0.34 -15.71 15 12 H 0.07 1.79 7.85 -52.49 -0.41 1.38 15 13 C 0.09 2.43 5.50 -17.36 -0.10 2.34 15 14 N -0.77 -22.92 11.83 55.55 0.66 -22.26 15 15 Si 0.91 20.15 29.56 -169.99 -5.02 15.13 15 16 H -0.27 -5.75 7.11 56.52 0.40 -5.35 15 17 H -0.28 -6.03 7.11 56.52 0.40 -5.63 15 18 H -0.27 -5.77 7.11 56.52 0.40 -5.37 15 19 O -0.20 -3.25 10.78 5.35 0.06 -3.19 15 20 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 15 21 H 0.06 0.45 8.14 -51.93 -0.42 0.03 15 22 H 0.06 0.52 8.14 -51.93 -0.42 0.10 15 23 H 0.08 0.69 8.14 -51.93 -0.42 0.27 15 24 H 0.10 0.61 8.14 -51.93 -0.42 0.19 15 25 H 0.18 1.88 8.06 -52.48 -0.42 1.45 15 26 H 0.08 1.57 8.14 -51.93 -0.42 1.15 15 27 H 0.09 1.95 8.14 -51.93 -0.42 1.53 15 28 H 0.38 8.16 8.44 -40.82 -0.34 7.81 15 29 H 0.27 7.32 8.29 -40.82 -0.34 6.98 15 LS Contribution 266.59 15.07 4.02 4.02 Total: -1.00 -34.59 266.59 -4.89 -39.48 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -3.27 Total: 4.48 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -0.93 Total: 7.41 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: 0.18 Total: -48.81 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: 0.14 Total: -21.71 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -34.59 -4.89 -39.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234137083.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.246 kcal (2) G-P(sol) polarization free energy of solvation -34.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds