Wall clock time and date at job start Sun Mar 29 2020 21:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.46959 * 2 1 4 4 C 1.34332 * 126.44280 * 90.00343 * 3 2 1 5 5 N 1.34471 * 107.66856 * 180.02562 * 4 3 2 6 6 C 1.30253 * 108.70602 * 0.02562 * 5 4 3 7 7 C 1.50696 * 125.62276 * 180.26292 * 6 5 4 8 8 N 1.46502 * 109.47064 * 89.69084 * 7 6 5 9 9 C 1.34780 * 120.00027 * 179.97438 * 8 7 6 10 10 O 1.21688 * 119.99707 * 0.02562 * 9 8 7 11 11 C 1.46372 * 119.99785 * 180.02562 * 9 8 7 12 12 H 1.07988 * 120.00264 * 0.02562 * 11 9 8 13 13 C 1.40060 * 119.99470 * 180.02562 * 11 9 8 14 14 N 1.30674 * 120.00144 * 359.97438 * 13 11 9 15 15 Si 1.86791 * 119.99558 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47637 * 60.00028 * 15 13 11 17 17 H 1.48505 * 109.47075 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47168 * 299.99498 * 15 13 11 19 19 O 1.33974 * 108.75653 * 359.97438 * 6 5 4 20 20 H 1.09003 * 109.46851 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.46637 * 299.99324 * 1 2 3 22 22 H 1.09000 * 109.47334 * 59.99698 * 1 2 3 23 23 H 1.08999 * 109.46637 * 240.00676 * 2 1 3 24 24 H 1.08991 * 109.47564 * 120.00414 * 2 1 3 25 25 H 1.08005 * 126.16232 * 0.02562 * 4 3 2 26 26 H 1.09003 * 109.46949 * 209.69285 * 7 6 5 27 27 H 1.09000 * 109.47067 * 329.69047 * 7 6 5 28 28 H 0.96998 * 120.00435 * 0.02562 * 8 7 6 29 29 H 0.96989 * 119.99852 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2983 2.1731 1.0806 5 7 2.7221 3.3737 0.6479 6 6 2.7207 3.3726 -0.6547 7 6 3.1331 4.5249 -1.5339 8 7 4.5684 4.4364 -1.8137 9 6 5.1630 5.3670 -2.5864 10 8 4.5077 6.2810 -3.0510 11 6 6.5969 5.2782 -2.8664 12 1 7.1783 4.4668 -2.4543 13 6 7.2149 6.2456 -3.6689 14 7 6.5112 7.2271 -4.1679 15 14 9.0446 6.1318 -4.0268 16 1 9.3347 4.8514 -4.7209 17 1 9.4510 7.2672 -4.8935 18 1 9.8029 6.1862 -2.7512 19 8 2.2982 2.1758 -1.0840 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3632 0.5137 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 1.8933 -0.5137 -0.8901 24 1 1.8934 -0.5138 0.8898 25 1 2.1912 1.8686 2.1113 26 1 2.5770 4.4844 -2.4705 27 1 2.9194 5.4648 -1.0249 28 1 5.0907 3.7076 -1.4436 29 1 6.9391 7.8968 -4.7239 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234137083.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:01 Heat of formation + Delta-G solvation = -54.231906 kcal Electronic energy + Delta-G solvation = -14586.049917 eV Core-core repulsion = 11895.492990 eV Total energy + Delta-G solvation = -2690.556927 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.44280 -39.47568 -36.04734 -35.68009 -34.90494 -34.40409 -30.91741 -28.75468 -27.00897 -24.53840 -23.20030 -22.04985 -21.78506 -19.57641 -18.03138 -17.83121 -17.33567 -16.37226 -16.09444 -15.95408 -15.33516 -15.23433 -14.52160 -14.20413 -14.00341 -13.59402 -13.39629 -13.14248 -12.70974 -12.66755 -12.60194 -12.47333 -12.11792 -12.05190 -11.53266 -10.93336 -10.11543 -9.69227 -9.67752 -8.32193 -6.89964 0.27537 1.40738 1.44497 1.50465 1.57257 1.58696 2.25430 2.42636 2.88602 3.15613 3.54487 3.70885 3.99931 4.08195 4.30187 4.33635 4.45808 4.53925 4.73400 4.89963 4.99353 5.19715 5.22485 5.29764 5.33066 5.78923 5.95581 6.17758 6.65443 6.83029 7.37341 8.38960 8.62267 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.056997 B = 0.005130 C = 0.004980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.134183 B = 5456.398430 C = 5621.209554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.036 4.036 3 C -0.039 4.039 4 C -0.056 4.056 5 N -0.489 5.489 6 C 0.169 3.831 7 C 0.235 3.765 8 N -0.751 5.751 9 C 0.542 3.458 10 O -0.625 6.625 11 C -0.570 4.570 12 H 0.088 0.912 13 C 0.029 3.971 14 N -0.818 5.818 15 Si 1.001 2.999 16 H -0.254 1.254 17 H -0.272 1.272 18 H -0.255 1.255 19 O -0.208 6.208 20 H 0.092 0.908 21 H 0.062 0.938 22 H 0.041 0.959 23 H 0.088 0.912 24 H 0.128 0.872 25 H 0.216 0.784 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.394 0.606 29 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.739 -15.705 8.405 19.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.073 4.073 3 C -0.092 4.092 4 C -0.195 4.195 5 N -0.220 5.220 6 C -0.037 4.037 7 C 0.110 3.890 8 N -0.408 5.408 9 C 0.348 3.652 10 O -0.512 6.512 11 C -0.607 4.607 12 H 0.106 0.894 13 C -0.187 4.187 14 N -0.447 5.447 15 Si 0.820 3.180 16 H -0.178 1.178 17 H -0.197 1.197 18 H -0.179 1.179 19 O -0.094 6.094 20 H 0.111 0.889 21 H 0.082 0.918 22 H 0.061 0.939 23 H 0.107 0.893 24 H 0.146 0.854 25 H 0.233 0.767 26 H 0.093 0.907 27 H 0.101 0.899 28 H 0.227 0.773 29 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.098 -14.370 8.266 18.034 hybrid contribution 0.511 -0.449 -0.437 0.808 sum -6.588 -14.819 7.828 18.008 Atomic orbital electron populations 1.21807 0.92825 1.03849 1.02091 1.20361 0.97025 0.83717 1.06208 1.24487 1.03503 0.97445 0.83750 1.23678 1.04891 0.88864 1.02065 1.70449 1.17955 1.24399 1.09185 1.25931 1.01180 0.86434 0.90194 1.19023 0.84506 0.90045 0.95475 1.45878 1.06879 1.31515 1.56524 1.18598 0.89088 0.80228 0.77323 1.90568 1.66962 1.37016 1.56664 1.21351 0.92259 1.13157 1.33910 0.89427 1.27000 1.05758 0.92986 0.92938 1.70160 1.39475 1.10387 1.24696 0.85019 0.74669 0.79039 0.79248 1.17781 1.19667 1.17913 1.84428 1.63645 1.23425 1.37905 0.88923 0.91844 0.93931 0.89300 0.85382 0.76701 0.90673 0.89859 0.77267 0.91295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.89 71.98 0.71 -1.08 15 2 C -0.04 -0.50 6.49 29.85 0.19 -0.31 15 3 C -0.04 -0.94 6.64 24.79 0.16 -0.78 15 4 C -0.06 -1.46 11.80 83.40 0.98 -0.47 15 5 N -0.49 -17.10 11.29 -303.82 -3.43 -20.53 15 6 C 0.17 6.14 7.71 88.34 0.68 6.82 15 7 C 0.23 9.87 6.30 85.63 0.54 10.41 15 8 N -0.75 -35.79 5.54 -471.14 -2.61 -38.40 15 9 C 0.54 32.05 7.75 86.36 0.67 32.71 15 10 O -0.63 -42.06 15.02 -4.31 -0.06 -42.12 15 11 C -0.57 -32.71 9.54 24.83 0.24 -32.48 15 12 H 0.09 4.51 7.85 -2.92 -0.02 4.49 15 13 C 0.03 1.61 5.50 85.31 0.47 2.08 15 14 N -0.82 -50.06 11.83 21.84 0.26 -49.80 15 15 Si 1.00 40.94 29.56 68.60 2.03 42.97 15 16 H -0.25 -9.74 7.11 99.48 0.71 -9.04 15 17 H -0.27 -10.66 7.11 99.48 0.71 -9.95 15 18 H -0.26 -9.86 7.11 99.48 0.71 -9.15 15 19 O -0.21 -6.79 10.78 -3.76 -0.04 -6.83 15 20 H 0.09 0.68 8.14 -2.39 -0.02 0.66 15 21 H 0.06 0.74 8.14 -2.39 -0.02 0.72 15 22 H 0.04 0.66 8.14 -2.39 -0.02 0.64 15 23 H 0.09 1.20 8.14 -2.39 -0.02 1.18 15 24 H 0.13 1.02 8.14 -2.39 -0.02 1.00 15 25 H 0.22 3.74 8.06 -2.91 -0.02 3.71 15 26 H 0.08 3.17 8.14 -2.39 -0.02 3.15 15 27 H 0.08 3.65 8.14 -2.39 -0.02 3.63 15 28 H 0.39 16.97 8.44 -92.71 -0.78 16.18 15 29 H 0.28 15.31 8.29 -92.72 -0.77 14.54 15 Total: -1.00 -77.20 266.59 1.17 -76.03 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: 0.39 Total: 21.78 kcal Atomic # 6 Polarization: 12.26 SS G_CDS: 4.65 Total: 16.91 kcal Atomic # 7 Polarization: -102.95 SS G_CDS: -5.78 Total: -108.74 kcal Atomic # 8 Polarization: -48.84 SS G_CDS: -0.11 Total: -48.95 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Total: -77.20 1.17 -76.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234137083.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.796 kcal (2) G-P(sol) polarization free energy of solvation -77.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds