Wall clock time and date at job start Sun Mar 29 2020 22:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 119.99918 * 2 1 4 4 H 1.48500 * 109.47067 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46900 * 299.99563 * 3 2 1 6 6 H 1.48495 * 109.47397 * 59.99661 * 3 2 1 7 7 C 1.38815 * 120.00161 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99752 * 160.62061 * 7 2 1 9 9 N 1.36941 * 119.99902 * 340.62328 * 7 2 1 10 10 C 1.46500 * 119.99871 * 320.25204 * 9 7 2 11 11 C 1.52995 * 109.47146 * 270.00108 * 10 9 7 12 12 H 1.08996 * 110.86053 * 308.79133 * 11 10 9 13 13 C 1.54481 * 110.96976 * 184.99880 * 11 10 9 14 14 N 1.46757 * 105.47532 * 216.46539 * 13 11 10 15 15 C 1.34419 * 111.30272 * 17.02187 * 14 13 11 16 16 O 1.21278 * 124.94406 * 179.55827 * 15 14 13 17 17 C 1.51280 * 110.11331 * 359.81612 * 15 14 13 18 18 C 1.46500 * 120.00025 * 140.25489 * 9 7 2 19 19 C 1.53001 * 117.49673 * 3.28481 * 18 9 7 20 20 C 1.52989 * 59.99985 * 252.50959 * 19 18 9 21 21 H 0.96999 * 120.00174 * 355.02040 * 1 2 3 22 22 H 1.08995 * 109.46916 * 150.00065 * 10 9 7 23 23 H 1.09001 * 109.47107 * 30.00570 * 10 9 7 24 24 H 1.09005 * 110.24139 * 97.46871 * 13 11 10 25 25 H 1.08997 * 110.24689 * 335.47294 * 13 11 10 26 26 H 0.97001 * 124.35306 * 196.99490 * 14 13 11 27 27 H 1.08993 * 110.48479 * 102.20038 * 17 15 14 28 28 H 1.08999 * 110.48454 * 224.84445 * 17 15 14 29 29 H 1.08995 * 115.54977 * 148.99316 * 18 9 7 30 30 H 1.08994 * 117.50271 * 0.02562 * 19 18 9 31 31 H 1.09007 * 117.49511 * 145.01688 * 19 18 9 32 32 H 1.09002 * 117.50496 * 252.51037 * 20 19 18 33 33 H 1.09003 * 117.49979 * 107.48949 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0444 -1.2287 -0.3098 9 7 1.3838 -2.3543 0.3945 10 6 0.4609 -2.3341 1.5321 11 6 1.2344 -2.6168 2.8215 12 1 1.8404 -3.5172 2.7210 13 6 0.2762 -2.7271 4.0281 14 7 0.9953 -2.1230 5.1558 15 6 2.0246 -1.3698 4.7314 16 8 2.7780 -0.7524 5.4539 17 6 2.1027 -1.3993 3.2209 18 6 1.6365 -3.6072 -0.3215 19 6 2.6681 -3.5796 -1.4511 20 6 1.1780 -3.6930 -1.7786 21 1 -0.4850 0.8369 0.0729 22 1 -0.3044 -3.0975 1.3927 23 1 -0.0116 -1.3541 1.5992 24 1 0.0544 -3.7733 4.2392 25 1 -0.6445 -2.1782 3.8302 26 1 0.7582 -2.2504 6.0877 27 1 1.6932 -0.4812 2.7997 28 1 3.1328 -1.5433 2.8949 29 1 1.5728 -4.5137 0.2803 30 1 3.1590 -2.6294 -1.6612 31 1 3.2835 -4.4681 -1.5924 32 1 0.8129 -4.6560 -2.1355 33 1 0.6882 -2.8173 -2.2045 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595301742.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:17 Heat of formation + Delta-G solvation = -11.978836 kcal Electronic energy + Delta-G solvation = -15940.660678 eV Core-core repulsion = 13387.769076 eV Total energy + Delta-G solvation = -2552.891602 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.17948 -38.77849 -37.41269 -35.27477 -33.27265 -31.28570 -28.96207 -26.95330 -24.92427 -22.92653 -21.86034 -21.41697 -21.10945 -18.41713 -18.23667 -17.07424 -16.90590 -16.38813 -15.86994 -15.62597 -14.76087 -14.71548 -14.15275 -13.99736 -13.79068 -13.52517 -12.97132 -12.82010 -12.51850 -12.32440 -12.04246 -11.87135 -11.79460 -11.45098 -11.29644 -10.84591 -10.73964 -10.43242 -10.03114 -8.42851 -7.74826 -5.44414 1.39933 1.48363 1.53533 1.57516 2.47060 2.53317 3.20142 3.45000 3.50148 3.65180 3.92724 4.16920 4.34184 4.41321 4.56823 4.65473 4.76528 4.79577 5.01556 5.02683 5.09445 5.10906 5.23607 5.37971 5.46273 5.62736 5.74812 5.89223 5.91607 6.04724 6.53089 7.22844 7.29988 7.91332 8.41680 9.13458 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.020513 B = 0.012048 C = 0.008882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.685712 B = 2323.567572 C = 3151.718608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.020 4.020 3 Si 0.924 3.076 4 H -0.271 1.271 5 H -0.295 1.295 6 H -0.292 1.292 7 C -0.242 4.242 8 H 0.052 0.948 9 N -0.566 5.566 10 C 0.161 3.839 11 C -0.103 4.103 12 H 0.089 0.911 13 C 0.110 3.890 14 N -0.715 5.715 15 C 0.513 3.487 16 O -0.594 6.594 17 C -0.130 4.130 18 C 0.108 3.892 19 C -0.188 4.188 20 C -0.220 4.220 21 H 0.249 0.751 22 H 0.049 0.951 23 H 0.067 0.933 24 H 0.114 0.886 25 H 0.076 0.924 26 H 0.417 0.583 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.120 0.880 30 H 0.070 0.930 31 H 0.108 0.892 32 H 0.100 0.900 33 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.208 -9.252 4.845 10.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.218 4.218 3 Si 0.754 3.246 4 H -0.195 1.195 5 H -0.222 1.222 6 H -0.219 1.219 7 C -0.373 4.373 8 H 0.070 0.930 9 N -0.283 5.283 10 C 0.035 3.965 11 C -0.124 4.124 12 H 0.107 0.893 13 C -0.014 4.014 14 N -0.370 5.370 15 C 0.301 3.699 16 O -0.476 6.476 17 C -0.171 4.171 18 C 0.000 4.000 19 C -0.226 4.226 20 C -0.260 4.260 21 H 0.059 0.941 22 H 0.067 0.933 23 H 0.084 0.916 24 H 0.132 0.868 25 H 0.094 0.906 26 H 0.257 0.743 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.137 0.863 30 H 0.089 0.911 31 H 0.126 0.874 32 H 0.118 0.882 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.933 -8.786 5.038 10.170 hybrid contribution 0.277 1.450 0.017 1.476 sum -0.656 -7.335 5.055 8.933 Atomic orbital electron populations 1.70128 1.06140 1.25983 1.52931 1.25555 0.95331 1.00262 1.00649 0.85885 0.79567 0.82436 0.76729 1.19501 1.22194 1.21857 1.19033 0.92673 0.85943 1.39657 0.93025 1.43534 1.50835 1.03491 1.30465 1.20812 0.90483 1.01569 0.83595 1.22763 0.96896 0.96749 0.95984 0.89252 1.22268 0.94795 1.00249 0.84059 1.46143 1.30597 1.49661 1.10563 1.21409 0.79646 0.76974 0.91886 1.90653 1.46672 1.46743 1.63537 1.22160 1.02946 1.01428 0.90523 1.21572 1.01092 0.90560 0.86744 1.23011 0.92068 1.02022 1.05511 1.23253 0.97192 1.00833 1.04755 0.94114 0.93303 0.91555 0.86822 0.90550 0.74314 0.90139 0.89780 0.86295 0.91133 0.87427 0.88201 0.92938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.46 11.50 21.65 0.25 -49.22 16 2 C -0.02 -1.04 4.83 84.86 0.41 -0.63 16 3 Si 0.92 43.62 29.60 68.60 2.03 45.65 16 4 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 5 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 6 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 7 C -0.24 -12.09 7.78 84.03 0.65 -11.43 16 8 H 0.05 2.68 6.76 -2.91 -0.02 2.66 16 9 N -0.57 -24.66 2.73 -678.06 -1.85 -26.51 16 10 C 0.16 6.25 4.71 86.38 0.41 6.65 16 11 C -0.10 -3.21 3.38 -9.68 -0.03 -3.24 16 12 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 13 C 0.11 2.59 7.35 86.83 0.64 3.22 16 14 N -0.72 -18.87 6.24 -459.82 -2.87 -21.73 16 15 C 0.51 18.62 8.43 87.90 0.74 19.36 16 16 O -0.59 -26.15 18.03 -3.02 -0.05 -26.21 16 17 C -0.13 -4.89 5.71 30.64 0.17 -4.72 16 18 C 0.11 4.02 6.56 44.99 0.30 4.32 16 19 C -0.19 -6.69 9.80 30.59 0.30 -6.39 16 20 C -0.22 -8.14 10.35 30.59 0.32 -7.83 16 21 H 0.25 13.35 8.32 -92.71 -0.77 12.58 16 22 H 0.05 1.72 8.07 -2.39 -0.02 1.70 16 23 H 0.07 3.07 5.38 -2.39 -0.01 3.05 16 24 H 0.11 1.83 8.14 -2.38 -0.02 1.81 16 25 H 0.08 1.80 7.89 -2.39 -0.02 1.79 16 26 H 0.42 8.74 8.96 -92.71 -0.83 7.91 16 27 H 0.08 3.53 7.60 -2.39 -0.02 3.51 16 28 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 29 H 0.12 3.64 8.14 -2.39 -0.02 3.62 16 30 H 0.07 2.90 6.47 -2.39 -0.02 2.88 16 31 H 0.11 3.09 8.14 -2.38 -0.02 3.07 16 32 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 33 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -62.99 274.76 1.69 -61.30 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: 0.28 Total: 17.41 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: 3.90 Total: -0.69 kcal Atomic # 7 Polarization: -92.99 SS G_CDS: -4.47 Total: -97.46 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.05 Total: -26.21 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -62.99 1.69 -61.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595301742.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.324 kcal (2) G-P(sol) polarization free energy of solvation -62.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds