Wall clock time and date at job start Sun Mar 29 2020 22:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 N 1.46500 * 109.47473 * 180.02562 * 3 2 1 5 5 C 1.34840 * 126.59134 * 124.70790 * 4 3 2 6 6 C 1.36673 * 106.82461 * 179.91214 * 5 4 3 7 7 C 1.47430 * 125.77785 * 180.16054 * 6 5 4 8 8 O 1.21632 * 120.00129 * 0.26527 * 7 6 5 9 9 N 1.34772 * 119.99992 * 180.25924 * 7 6 5 10 10 C 1.36959 * 119.99960 * 180.02562 * 9 7 6 11 11 H 1.07995 * 120.00025 * 0.02562 * 10 9 7 12 12 C 1.38993 * 119.99889 * 180.02562 * 10 9 7 13 13 N 1.31398 * 120.00037 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99961 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47518 * 59.99969 * 14 12 10 16 16 H 1.48498 * 109.47088 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46985 * 300.00058 * 14 12 10 18 18 N 1.34421 * 108.44009 * 0.36425 * 6 5 4 19 19 N 1.28754 * 109.53322 * 359.77151 * 18 6 5 20 20 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 22 22 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 23 23 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 24 24 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 25 25 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 26 26 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 27 27 H 1.08000 * 126.58734 * 0.02562 * 5 4 3 28 28 H 0.97000 * 120.00161 * 0.02562 * 9 7 6 29 29 H 0.97002 * 120.00249 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.3083 2.0592 -0.8909 6 6 5.5947 1.7977 -0.5103 7 6 6.8101 2.2762 -1.1941 8 8 6.7151 2.9724 -2.1870 9 7 8.0263 1.9423 -0.7190 10 6 9.1553 2.3873 -1.3540 11 1 9.0710 3.0060 -2.2351 12 6 10.4096 2.0425 -0.8643 13 7 10.5121 1.2901 0.2081 14 14 11.9494 2.6499 -1.7299 15 1 11.9618 4.1349 -1.7342 16 1 13.1500 2.1465 -1.0155 17 1 11.9606 2.1508 -3.1284 18 7 5.5641 1.0267 0.5903 19 7 4.3412 0.7964 0.9208 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.8934 -0.5139 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.6766 1.9563 -0.8900 26 1 1.6767 1.9564 0.8899 27 1 3.9954 2.6483 -1.7403 28 1 8.1020 1.3869 0.0726 29 1 11.3875 1.0498 0.5500 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611234755.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:18 Heat of formation + Delta-G solvation = 21.607712 kcal Electronic energy + Delta-G solvation = -14599.082399 eV Core-core repulsion = 11944.106876 eV Total energy + Delta-G solvation = -2654.975523 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.101 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.07262 -39.82751 -36.84477 -36.06148 -33.64973 -33.20317 -31.67656 -28.10454 -27.03479 -24.30748 -23.51213 -22.36623 -21.04327 -20.05023 -18.65964 -17.15542 -17.04883 -16.63149 -15.99797 -15.93645 -15.48676 -15.18769 -14.75061 -14.34620 -13.57597 -13.54147 -13.09962 -12.92887 -12.90956 -12.50179 -12.39812 -12.15320 -12.07128 -11.70839 -11.55512 -11.17755 -10.67684 -10.23056 -10.05573 -8.50531 -5.99276 0.25014 0.80352 1.23261 1.43457 1.49731 1.56801 2.29185 2.43409 3.01842 3.27440 3.40959 3.58113 3.86416 4.04562 4.17242 4.22298 4.29011 4.49135 4.61962 4.81076 4.93743 5.13391 5.20245 5.36297 5.37229 5.61120 5.92279 6.47535 6.97076 7.06271 7.47343 7.97694 8.66672 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.076427 B = 0.005216 C = 0.004970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 366.273527 B = 5367.166056 C = 5632.619089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.111 3.889 4 N -0.348 5.348 5 C 0.096 3.904 6 C -0.102 4.102 7 C 0.509 3.491 8 O -0.626 6.626 9 N -0.547 5.547 10 C -0.340 4.340 11 H 0.093 0.907 12 C -0.015 4.015 13 N -0.915 5.915 14 Si 1.007 2.993 15 H -0.266 1.266 16 H -0.270 1.270 17 H -0.266 1.266 18 N -0.244 5.244 19 N -0.092 5.092 20 H 0.063 0.937 21 H 0.068 0.932 22 H 0.073 0.927 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.140 0.860 26 H 0.114 0.886 27 H 0.235 0.765 28 H 0.398 0.602 29 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.165 -0.732 -0.323 18.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C -0.008 4.008 4 N -0.134 5.134 5 C -0.062 4.062 6 C -0.242 4.242 7 C 0.296 3.704 8 O -0.514 6.514 9 N -0.180 5.180 10 C -0.469 4.469 11 H 0.111 0.889 12 C -0.216 4.216 13 N -0.554 5.554 14 Si 0.829 3.171 15 H -0.191 1.191 16 H -0.195 1.195 17 H -0.191 1.191 18 N -0.117 5.117 19 N -0.072 5.072 20 H 0.082 0.918 21 H 0.087 0.913 22 H 0.092 0.908 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.157 0.843 26 H 0.132 0.868 27 H 0.251 0.749 28 H 0.232 0.768 29 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.052 -1.249 0.431 18.100 hybrid contribution 0.851 0.361 -0.570 1.086 sum -17.201 -0.887 -0.139 17.225 Atomic orbital electron populations 1.21665 0.91810 1.03134 1.03396 1.21801 0.98487 0.94294 1.02802 1.22651 0.69879 1.00635 1.07586 1.50816 1.09937 1.34024 1.18672 1.23663 0.88802 0.97267 0.96459 1.21656 0.95636 1.08107 0.98825 1.16906 0.82363 0.85247 0.85908 1.90562 1.86864 1.44751 1.29228 1.41853 1.04561 1.44618 1.27012 1.19868 0.84185 1.31257 1.11604 0.88872 1.26361 1.02351 0.96105 0.96793 1.69735 1.27137 1.35770 1.22789 0.84796 0.75496 0.78754 0.78087 1.19063 1.19484 1.19086 1.74656 1.13796 1.11632 1.11626 1.81727 0.93399 1.18657 1.13446 0.91754 0.91266 0.90805 0.92037 0.92112 0.84255 0.86772 0.74925 0.76763 0.90901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.91 71.98 0.71 -0.48 15 2 C -0.14 -1.94 6.14 30.59 0.19 -1.76 15 3 C 0.11 1.59 6.54 86.38 0.56 2.16 15 4 N -0.35 -9.40 3.69 -347.02 -1.28 -10.68 15 5 C 0.10 3.00 11.28 83.86 0.95 3.94 15 6 C -0.10 -4.44 6.99 40.80 0.29 -4.15 15 7 C 0.51 27.06 7.77 86.67 0.67 27.74 15 8 O -0.63 -35.42 16.44 -4.13 -0.07 -35.49 15 9 N -0.55 -31.39 5.28 -309.96 -1.64 -33.02 15 10 C -0.34 -20.12 9.68 84.07 0.81 -19.31 15 11 H 0.09 5.64 7.15 -2.91 -0.02 5.62 15 12 C -0.02 -0.84 5.50 84.94 0.47 -0.38 15 13 N -0.92 -52.29 13.05 21.67 0.28 -52.01 15 14 Si 1.01 43.41 29.55 68.60 2.03 45.44 15 15 H -0.27 -11.14 7.11 99.48 0.71 -10.43 15 16 H -0.27 -10.99 7.11 99.48 0.71 -10.29 15 17 H -0.27 -11.15 7.11 99.48 0.71 -10.45 15 18 N -0.24 -10.71 12.03 -50.01 -0.60 -11.31 15 19 N -0.09 -3.36 13.64 37.02 0.51 -2.85 15 20 H 0.06 0.56 8.14 -2.39 -0.02 0.54 15 21 H 0.07 0.47 8.14 -2.39 -0.02 0.45 15 22 H 0.07 0.43 8.14 -2.39 -0.02 0.41 15 23 H 0.06 1.13 8.14 -2.39 -0.02 1.11 15 24 H 0.06 1.00 8.14 -2.39 -0.02 0.99 15 25 H 0.14 1.02 8.08 -2.39 -0.02 1.00 15 26 H 0.11 1.28 8.14 -2.39 -0.02 1.26 15 27 H 0.23 5.45 8.06 -2.91 -0.02 5.43 15 28 H 0.40 23.01 7.58 -92.71 -0.70 22.31 15 29 H 0.28 14.89 8.31 -92.71 -0.77 14.12 15 Total: -1.00 -74.44 266.85 4.35 -70.09 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: 0.47 Total: 22.07 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: 4.65 Total: 7.76 kcal Atomic # 7 Polarization: -107.14 SS G_CDS: -2.73 Total: -109.87 kcal Atomic # 8 Polarization: -35.42 SS G_CDS: -0.07 Total: -35.49 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -74.44 4.35 -70.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611234755.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.699 kcal (2) G-P(sol) polarization free energy of solvation -74.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds