Wall clock time and date at job start Sun Mar 29 2020 21:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35244 * 126.07226 * 2 1 4 4 C 1.40400 * 107.86833 * 179.90760 * 3 2 1 5 5 N 1.40197 * 125.97326 * 180.14908 * 4 3 2 6 6 C 1.34774 * 119.99701 * 0.22510 * 5 4 3 7 7 N 1.34775 * 119.99859 * 180.02562 * 6 5 4 8 8 O 1.21596 * 120.00529 * 0.02562 * 6 5 4 9 9 N 1.31208 * 108.05420 * 0.35939 * 4 3 2 10 10 N 1.34968 * 126.07013 * 180.31258 * 2 1 3 11 11 C 1.46496 * 125.97468 * 359.94647 * 10 2 1 12 12 C 1.50702 * 109.47635 * 89.99791 * 11 10 2 13 13 H 1.07999 * 119.99790 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99972 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00160 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99693 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46844 * 60.00071 * 16 14 12 18 18 H 1.48494 * 109.46947 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47031 * 300.00020 * 16 14 12 20 20 H 1.09002 * 109.47152 * 269.68666 * 1 2 3 21 21 H 1.09001 * 109.46980 * 149.68766 * 1 2 3 22 22 H 1.09004 * 109.47113 * 29.68747 * 1 2 3 23 23 H 1.08001 * 126.06270 * 0.02562 * 3 2 1 24 24 H 0.96995 * 119.99860 * 180.22903 * 5 4 3 25 25 H 0.97005 * 120.00218 * 359.97438 * 7 6 5 26 26 H 0.97005 * 120.00458 * 180.02562 * 7 6 5 27 27 H 1.09001 * 109.47030 * 210.00125 * 11 10 2 28 28 H 1.09005 * 109.47259 * 329.99077 * 11 10 2 29 29 H 0.96997 * 120.00168 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0931 0.0000 4 6 3.6371 0.6545 0.0022 5 7 4.7738 1.4751 0.0058 6 6 4.6370 2.8159 0.0121 7 7 5.7298 3.6047 0.0151 8 8 3.5277 3.3139 0.0152 9 7 3.6337 -0.6575 -0.0044 10 7 2.3017 -1.0909 -0.0060 11 6 1.8501 -2.4845 -0.0124 12 6 1.6941 -2.9555 -1.4354 13 1 1.9094 -2.2838 -2.2532 14 6 1.2765 -4.2440 -1.6933 15 7 1.0148 -5.0622 -0.6974 16 14 1.0824 -4.8275 -3.4572 17 1 2.3876 -4.7262 -4.1585 18 1 0.6260 -6.2406 -3.4637 19 1 0.0802 -3.9799 -4.1515 20 1 -0.3633 -0.0056 1.0277 21 1 -0.3633 -0.8872 -0.5187 22 1 -0.3633 0.8928 -0.5090 23 1 1.9720 2.1211 0.0004 24 1 5.6587 1.0778 0.0037 25 1 6.6148 3.2075 0.0131 26 1 5.6314 4.5697 0.0201 27 1 2.5851 -3.1070 0.4978 28 1 0.8919 -2.5584 0.5019 29 1 0.7207 -5.9685 -0.8788 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611266853.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:47 Heat of formation + Delta-G solvation = 17.131521 kcal Electronic energy + Delta-G solvation = -14939.709111 eV Core-core repulsion = 12284.539486 eV Total energy + Delta-G solvation = -2655.169626 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.101 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.27423 -40.70657 -36.29027 -35.34930 -34.59762 -32.80713 -32.48776 -28.53240 -27.84685 -25.11267 -23.32333 -21.31958 -21.07615 -18.97765 -18.75381 -18.16640 -17.35965 -16.61682 -16.48777 -16.03183 -15.66530 -15.43338 -14.64644 -14.31743 -13.78877 -13.63544 -13.55276 -13.15095 -12.82594 -12.66331 -12.23901 -12.12472 -11.58344 -11.35000 -11.18572 -10.72295 -10.71901 -9.55848 -9.08085 -8.31283 -6.49342 1.03966 1.25749 1.39432 1.40902 1.50201 1.68921 2.22728 2.38248 2.42604 2.98054 3.48680 3.91361 4.17920 4.49118 4.78178 4.79493 4.88894 4.99590 5.04125 5.17199 5.25482 5.54847 5.82170 5.84337 5.98512 6.00893 6.28634 6.62699 6.77097 7.16041 7.21654 7.55279 8.74228 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.043364 B = 0.006377 C = 0.006079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.547216 B = 4390.045931 C = 4604.939039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.087 3.913 3 C -0.300 4.300 4 C 0.290 3.710 5 N -0.635 5.635 6 C 0.710 3.290 7 N -0.830 5.830 8 O -0.612 6.612 9 N -0.360 5.360 10 N -0.344 5.344 11 C 0.276 3.724 12 C -0.555 4.555 13 H 0.050 0.950 14 C 0.023 3.977 15 N -0.918 5.918 16 Si 0.971 3.029 17 H -0.275 1.275 18 H -0.273 1.273 19 H -0.266 1.266 20 H 0.093 0.907 21 H 0.067 0.933 22 H 0.102 0.898 23 H 0.166 0.834 24 H 0.423 0.577 25 H 0.417 0.583 26 H 0.429 0.571 27 H 0.025 0.975 28 H 0.052 0.948 29 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.343 13.184 1.077 14.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.043 4.043 3 C -0.331 4.331 4 C 0.034 3.966 5 N -0.288 5.288 6 C 0.407 3.593 7 N -0.401 5.401 8 O -0.491 6.491 9 N -0.191 5.191 10 N -0.127 5.127 11 C 0.157 3.843 12 C -0.593 4.593 13 H 0.068 0.932 14 C -0.178 4.178 15 N -0.556 5.556 16 Si 0.795 3.205 17 H -0.201 1.201 18 H -0.197 1.197 19 H -0.190 1.190 20 H 0.111 0.889 21 H 0.086 0.914 22 H 0.120 0.880 23 H 0.183 0.817 24 H 0.260 0.740 25 H 0.249 0.751 26 H 0.264 0.736 27 H 0.043 0.957 28 H 0.070 0.930 29 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.031 12.125 1.136 13.589 hybrid contribution 0.425 0.004 -0.676 0.799 sum 6.456 12.128 0.460 13.747 Atomic orbital electron populations 1.20502 0.85375 1.04362 1.04122 1.21747 0.96674 0.86433 0.99448 1.21419 0.90065 0.99883 1.21695 1.18984 0.88211 0.88960 1.00397 1.41368 1.07037 1.03958 1.76477 1.15909 0.85583 0.80346 0.77433 1.42583 1.06851 1.10209 1.80494 1.90884 1.25728 1.74071 1.58395 1.77157 1.00081 1.09745 1.32092 1.48765 1.01675 1.07467 1.54744 1.19237 0.94912 0.72440 0.97740 1.21429 1.47642 0.98389 0.91823 0.93210 1.25732 0.93938 0.95868 1.02259 1.69993 1.45036 1.07422 1.33172 0.85414 0.78747 0.77660 0.78714 1.20065 1.19749 1.19028 0.88856 0.91411 0.87977 0.81681 0.73951 0.75127 0.73575 0.95729 0.93019 0.91724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.91 9.89 71.24 0.70 -2.20 15 2 C 0.09 3.75 6.93 41.39 0.29 4.04 15 3 C -0.30 -12.57 9.52 22.11 0.21 -12.36 15 4 C 0.29 11.94 8.11 133.31 1.08 13.02 15 5 N -0.64 -18.92 5.46 -321.23 -1.75 -20.67 15 6 C 0.71 19.37 8.81 179.06 1.58 20.94 15 7 N -0.83 -11.62 8.88 -184.74 -1.64 -13.26 15 8 O -0.61 -22.03 14.31 -4.02 -0.06 -22.09 15 9 N -0.36 -17.07 12.59 -54.44 -0.69 -17.76 15 10 N -0.34 -16.88 3.59 -338.44 -1.22 -18.10 15 11 C 0.28 14.71 5.81 85.63 0.50 15.20 15 12 C -0.55 -31.30 9.39 25.60 0.24 -31.06 15 13 H 0.05 2.89 7.81 -2.91 -0.02 2.87 15 14 C 0.02 1.27 5.46 84.66 0.46 1.73 15 15 N -0.92 -52.02 13.29 21.45 0.28 -51.74 15 16 Si 0.97 43.13 29.54 68.60 2.03 45.15 15 17 H -0.28 -12.19 7.11 99.48 0.71 -11.49 15 18 H -0.27 -11.53 7.11 99.48 0.71 -10.82 15 19 H -0.27 -11.38 7.11 99.48 0.71 -10.68 15 20 H 0.09 2.74 8.14 -2.39 -0.02 2.72 15 21 H 0.07 2.51 7.71 -2.39 -0.02 2.49 15 22 H 0.10 2.89 8.14 -2.38 -0.02 2.87 15 23 H 0.17 6.77 5.91 -2.91 -0.02 6.75 15 24 H 0.42 9.54 8.84 -92.71 -0.82 8.72 15 25 H 0.42 2.86 8.84 -92.70 -0.82 2.04 15 26 H 0.43 4.56 8.93 -92.70 -0.83 3.73 15 27 H 0.02 1.42 8.14 -2.39 -0.02 1.40 15 28 H 0.05 2.73 7.65 -2.38 -0.02 2.71 15 29 H 0.27 14.49 8.31 -92.71 -0.77 13.72 15 Total: -1.00 -72.87 261.30 0.77 -72.10 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -1.25 Total: 17.04 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: 5.06 Total: 9.31 kcal Atomic # 7 Polarization: -116.51 SS G_CDS: -5.01 Total: -121.52 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.06 Total: -22.09 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -72.87 0.77 -72.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611266853.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.234 kcal (2) G-P(sol) polarization free energy of solvation -72.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds