Wall clock time and date at job start Sun Mar 29 2020 22:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 119.99788 * 2 1 4 4 H 1.48498 * 109.47211 * 274.86850 * 3 2 1 5 5 H 1.48501 * 109.46966 * 34.87149 * 3 2 1 6 6 H 1.48499 * 109.46791 * 154.86749 * 3 2 1 7 7 C 1.38803 * 120.00155 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00077 * 188.31163 * 7 2 1 9 9 N 1.36941 * 120.00166 * 8.30549 * 7 2 1 10 10 C 1.49701 * 126.05609 * 13.89559 * 9 7 2 11 11 C 1.50904 * 102.26557 * 154.83602 * 10 9 7 12 12 H 1.08998 * 109.99654 * 291.15540 * 11 10 9 13 13 C 1.50295 * 125.75107 * 155.89601 * 11 10 9 14 14 C 1.55948 * 104.15413 * 214.84843 * 13 11 10 15 15 C 1.56396 * 105.78830 * 7.54529 * 14 13 11 16 16 C 1.50772 * 101.65983 * 24.99792 * 15 14 13 17 17 H 1.09007 * 109.59537 * 69.24430 * 16 15 14 18 18 C 1.49212 * 126.06176 * 193.86198 * 9 7 2 19 19 H 1.09002 * 110.36113 * 291.91298 * 18 9 7 20 20 C 1.50699 * 110.35899 * 54.11399 * 18 9 7 21 21 N 1.34777 * 119.99901 * 197.07402 * 20 18 9 22 22 O 1.21276 * 120.00140 * 17.07864 * 20 18 9 23 23 H 0.97001 * 120.00246 * 359.97438 * 1 2 3 24 24 H 1.09001 * 110.84311 * 273.03173 * 10 9 7 25 25 H 1.09000 * 110.84469 * 36.64311 * 10 9 7 26 26 H 1.08997 * 110.49674 * 333.51917 * 13 11 10 27 27 H 1.09001 * 110.49272 * 96.05249 * 13 11 10 28 28 H 1.08995 * 110.18242 * 126.62347 * 14 13 11 29 29 H 1.09005 * 110.18544 * 248.38999 * 14 13 11 30 30 H 1.09001 * 111.00403 * 143.09338 * 15 14 13 31 31 H 1.09005 * 111.00144 * 266.90214 * 15 14 13 32 32 H 0.97002 * 120.00037 * 0.02562 * 21 20 18 33 33 H 0.96999 * 120.00156 * 179.72265 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3947 2.1059 -1.3950 5 1 1.5028 2.6208 0.8005 6 1 3.5953 1.4127 0.5946 7 6 2.0102 -1.2021 -0.0005 8 1 3.0817 -1.2070 0.1347 9 7 1.3364 -2.3817 -0.1724 10 6 -0.0730 -2.5292 -0.6551 11 6 -0.0665 -3.9187 -1.2437 12 1 0.5443 -3.9383 -2.1463 13 6 -1.2683 -4.8045 -1.4171 14 6 -0.7206 -6.2432 -1.1680 15 6 0.7503 -6.0583 -0.6698 16 6 0.7016 -4.6696 -0.0849 17 1 0.0951 -4.6755 0.8209 18 6 1.8769 -3.7480 0.0877 19 1 2.6579 -3.9904 -0.6331 20 6 2.4141 -3.8406 1.4926 21 7 3.2460 -4.8456 1.8311 22 8 2.0979 -3.0109 2.3187 23 1 -0.4850 0.8400 0.0004 24 1 -0.7762 -2.4628 0.1750 25 1 -0.3012 -1.7855 -1.4187 26 1 -2.0349 -4.5555 -0.6835 27 1 -1.6655 -4.7150 -2.4282 28 1 -1.3158 -6.7452 -0.4052 29 1 -0.7358 -6.8172 -2.0945 30 1 0.9997 -6.7950 0.0938 31 1 1.4534 -6.1073 -1.5013 32 1 3.4992 -5.5090 1.1703 33 1 3.5950 -4.9030 2.7343 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615807094.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:55 Heat of formation + Delta-G solvation = -4.384738 kcal Electronic energy + Delta-G solvation = -16254.152673 eV Core-core repulsion = 13701.590376 eV Total energy + Delta-G solvation = -2552.562297 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.85863 -37.79438 -34.41686 -32.90474 -31.58231 -29.64313 -28.01077 -25.92569 -24.11602 -21.48828 -20.36522 -19.45450 -18.79928 -17.02159 -16.23771 -16.03428 -15.16843 -14.52206 -14.19748 -13.79154 -13.56452 -13.17764 -12.67284 -12.36858 -11.73506 -11.54493 -11.14294 -10.92166 -10.77431 -10.70634 -10.53453 -10.18715 -9.94494 -9.88758 -9.65331 -9.49642 -8.98919 -8.79502 -8.49795 -6.77160 -5.65570 -2.98478 3.46492 3.52135 3.54031 3.55710 4.20168 4.52017 4.63151 5.05212 5.09881 5.47697 5.54635 5.62073 5.71796 5.81607 5.90440 5.93665 6.05237 6.12399 6.23273 6.28667 6.42633 6.53276 6.62559 6.85835 6.96656 7.39932 7.45817 7.63613 7.81951 8.00660 8.26124 9.13531 9.20813 9.83763 10.50741 11.48695 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.028909 B = 0.010936 C = 0.008500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.334470 B = 2559.745516 C = 3293.368240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.003 4.003 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.213 4.213 8 H 0.072 0.928 9 N -0.574 5.574 10 C 0.192 3.808 11 C -0.127 4.127 12 H 0.068 0.932 13 C -0.103 4.103 14 C -0.120 4.120 15 C -0.102 4.102 16 C -0.118 4.118 17 H 0.073 0.927 18 C 0.157 3.843 19 H 0.054 0.946 20 C 0.494 3.506 21 N -0.873 5.873 22 O -0.515 6.515 23 H 0.252 0.748 24 H 0.032 0.968 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.392 0.608 33 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.437 -13.543 -2.995 13.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.200 4.200 3 Si 0.742 3.258 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.342 4.342 8 H 0.090 0.910 9 N -0.298 5.298 10 C 0.069 3.931 11 C -0.147 4.147 12 H 0.087 0.913 13 C -0.141 4.141 14 C -0.158 4.158 15 C -0.140 4.140 16 C -0.137 4.137 17 H 0.091 0.909 18 C 0.046 3.954 19 H 0.071 0.929 20 C 0.277 3.723 21 N -0.438 5.438 22 O -0.387 6.387 23 H 0.062 0.938 24 H 0.050 0.950 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.219 0.781 33 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 1.032 -12.592 -2.579 12.894 hybrid contribution 0.824 0.495 0.362 1.027 sum 1.856 -12.096 -2.216 12.437 Atomic orbital electron populations 1.69944 1.04949 1.25095 1.56175 1.24846 0.95613 0.97739 1.01784 0.86111 0.78813 0.83633 0.77269 1.21684 1.21745 1.20656 1.18909 0.90409 0.82171 1.42720 0.91004 1.45701 1.11344 0.98453 1.74319 1.20684 0.85573 0.90233 0.96646 1.22548 0.96481 0.98079 0.97551 0.91311 1.21449 0.97635 0.93874 1.01184 1.22942 0.95485 0.97042 1.00321 1.21745 0.96909 0.95620 0.99705 1.21961 0.97777 0.94155 0.99839 0.90881 1.20410 0.94817 0.89482 0.90660 0.92859 1.22296 0.77630 0.79889 0.92503 1.44219 1.52637 1.31333 1.15642 1.90726 1.57152 1.38982 1.51818 0.93797 0.94962 0.91237 0.91743 0.92040 0.92112 0.92097 0.92135 0.91455 0.78148 0.78503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.98 10.90 55.49 0.60 -27.37 16 2 C 0.00 -0.09 5.42 -17.43 -0.09 -0.18 16 3 Si 0.91 23.27 29.56 -169.99 -5.03 18.24 16 4 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 5 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 6 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.21 -6.25 9.23 -15.06 -0.14 -6.38 16 8 H 0.07 2.09 7.84 -52.49 -0.41 1.68 16 9 N -0.57 -15.06 3.05 -164.95 -0.50 -15.57 16 10 C 0.19 4.72 5.23 -3.31 -0.02 4.70 16 11 C -0.13 -2.35 2.82 -90.27 -0.25 -2.61 16 12 H 0.07 1.27 8.13 -51.93 -0.42 0.85 16 13 C -0.10 -1.53 6.69 -26.50 -0.18 -1.71 16 14 C -0.12 -1.48 6.95 -23.33 -0.16 -1.64 16 15 C -0.10 -1.32 6.70 -26.02 -0.17 -1.49 16 16 C -0.12 -2.07 2.19 -90.31 -0.20 -2.27 16 17 H 0.07 1.44 7.96 -51.93 -0.41 1.02 16 18 C 0.16 3.28 3.42 -68.90 -0.24 3.04 16 19 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 20 C 0.49 10.48 7.07 -10.99 -0.08 10.40 16 21 N -0.87 -12.88 8.87 31.22 0.28 -12.61 16 22 O -0.51 -13.89 16.76 5.56 0.09 -13.80 16 23 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 24 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 25 H 0.07 1.86 7.22 -51.93 -0.38 1.48 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.39 4.36 8.83 -40.82 -0.36 4.00 16 33 H 0.39 5.14 8.93 -40.82 -0.36 4.78 16 LS Contribution 268.50 15.07 4.05 4.05 Total: -1.00 -34.80 268.50 -6.90 -41.70 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -4.86 Total: 3.50 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -1.53 Total: 1.86 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: 0.38 Total: -55.54 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: 0.09 Total: -13.80 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -5.03 Total: 18.24 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -34.80 -6.90 -41.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615807094.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.318 kcal (2) G-P(sol) polarization free energy of solvation -34.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds